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MS006412 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TACGCGGATGTTGAGCAACAGCAAGGGAAAAAGAAGCATAAGGGCAAGCACGACAAGCCGAAGCCATGGGATGAAGATCCTAATATTGACCGCTGGAAAGTCGACAAGTTTGATCCCTCCTGGAATGAAGGCGGCATGCTCGAAGTCAGCTCCTTCTCTACTCTGTTTCCCGAGTACAGAGGCAAGGAATTTCGACGTTCTTCTTTTCAATTTTACTCTCTTGCTATTACGAACAAGTAGGTTGGAATGAATAGAGTATGTGTTGCTTAGATGGCACCTCGAGGTCCAAATTGATCTTTAGATTGTTAGCGCGGCGCACTTTATTTAATTCAGTTTTGGTTCGCGGACAACGTTGTGAAACAGTTTCAGATTACTGTGAACATCGAGGTTGTTTGAACTGTTGGTTTCGCCAAGTAGAGTGGCTAATAAGGGGCTATCATTTCATGTTTGGTTTCTTTTAGGCCCACATCCTTTATTCAGCGTTTTAAGAATTAGTTCGATTTCTACCCGGTTACACTATTGCGGTCGAGATGGTTTGGTATGGTTTCGAGGGAGCCAAGAAAGTTTTTTCCTTAGTTCCGCTACCTATTTTGTCAATGTTTTTCCTGAAAATATTTTGGTGGCAACAGAATAGCGTGGTTTCGGTCTTGAAATCTATGAATTTGGCTATCTTTATCGGTGGGAAATGTATAGTTAATTTTGTCTTTTCTGATAAGTTTGATTTTACTTCCATCTACGGATCTGTCTGTCTCTCAATATATATTTTGATTGACTGTGCACAACAATCAGATTCAAATTTTTAAGGATTTCCATTTTTCAATTTTTCAGAAAAGTATTTGCAAGAAGCATGGCCGATTGTTAAGTCTGCGTTGAAAGAGTTTGGTGTTGCCTGTGAGCTGAATCTGGTAAGAGTCCTTAAACCTCTGATAGAGAAATGAAAGAGTCCATAACTCTGATGTTGGATGATTTGGTCAGCTGTGAGGTAGTCATTCTTTTTTTCTGGTAGTCTTCCTGCATGTGCTTGTAAGCAGTTAGTCTGTAGCTGTCAGTTAACATGTTAGAGCTAGCGTTTCCCATAGACAAGATTTTCTTTCATGCATTTACATTAAATATTTCTGGATAGAAACACCCAAGTTAGAATTAAAAATGAAGAATCAAGATTTCTCTGATATGATTTACTCTTCCTATATTTTAAAGCCGAAGTGAATCCTTTAGATCAAGATTTGGTTATTTTTGGAGGGTTAAATTTATCTATGTCTCGTTTATACAGTTTCCTTTTCCTTTCTGCTAATAGTAATGACTTAATCCCACCAACTTGAGGTGTAAGCATAACTTATCCTAAAGAATTTCATCTTCATATACTTTTCCGCCTGTATTCTTCTTACTTCCCAAGCTTAAGTTTTAATTTTAACCTTACTAAAATCAGATTTTATGGTGCCAATGTACTCCTAATTTTTGATATGGTCCAATTTTGAATGATAATAGGTTCTAGGGTTTTGCAACACTTTTAATTTTTTTTTTTTGAATAAGATATGAAATTTTCATTGATAAATGAAAATAACAGGAATGTTCAAAGACACAAACCCCTAAAGGAGTGTGAAAAAGAAAAACCATAAAGCGAAGAAGTAATAAAAGCTTCTAATTCTAGAAGAATAACTTAAAAATAAATCTAAGAAGGAACACCATTGAGAAGCCTTGAACTTTGCAAGCTCATTACAATCTAGCCAATCCTTGCTCTTGTTGCAACACTGATCCAGAACTATCCTTTCTATAAAATGTAGAATGTTTACTTAGTAAAATTAGAGATGTATAAAGATGCAAGACTCTACAGCATTTGTGTGATGTTTGCTGTAGTTGAGTTATATATACTATTTAATCCAGAACTATCCCTTGGGCGTTGGCCACTGCTGAGTGTTGCTGTGATTCATATTTGTTCTTTGTCTTTCAGATTCTGAATATTACCAAAACCTCTATTTCTTGGTAGTCTAGTCGTATGCATTAAATGTGTTTGTGCTAAACCATAGTTTGCATTTGTCTCCCCCCCACCCACCCACATGATATCTAGGCATTCAAACCACCCTTTATGGGAGTGTGAGATAAGGAGGTTCATTGATTGTGATTGACAGTTTACACTGTTTGGATTTTGATTATGCTATTTGAGATGCTTTGAAACAAATTGTTGCTTGCTGCATGTGTTTTAATCTACTATGGTTGGCCAGGTTGAAGGATCAATGACGGTTTCAACAACCAGGAAGACTAGGGATCCATATATTATTGTCAAGGCAAGGGATCTTATCAAACTCTTGTCAAGAAGCGTACCTGCTCCTCAGGTATAACAATAATTTGATTCATTTTATGGTATTTCTCTATTGATGTAGTCGTTTGAGACTTTCTTTCACATATATTGTTATTTTGTAGTAAGTTGTTTGGTCATGTTTTGTATTCCATTTTGTTGTGTCAGGCAATTAAAATACTGGACGATGAAATGCAATGTGATATCATTAAGATTGGGAATTTGGTAGGCAAGAAGGTAAGTGTCATTTACAACATGTTTTAGTTATTATAGACTGGTTTTGAGCTCTAATTCTATGAAGACATTTGTTTAAGAAATTTTCATAGTTATCATCCTTTAATCTTCTTGCAATTGGACGACTACGGTCTAAGGTACACAGTCCATATATAGTTTTTTATTCTTTGATCACTAGAACATGCAACTTGAAGTTGAAAATTGGTTAGAGGTTAAGTTTCTTTGTTTTTTTTTTTGTGTATTCATAATGTTGGTAATCAAACATTAGATGGAATACCGTATCCCATAGCATATTTTTTGATTTTTTTGATGCCATGATTAAGTTTATAAGTATTTCTTGCATCATAATTATTTATTATGTTTATGAGTTTCTTTTATTTGCAAGAAGGTATAGGGTTATGGATGTGTTCCTCATGCTTTATCTGCTCTATATCAATCTTGAAATTTGACTTTGGCCTGACCTCTATTATAATGCAGGATCGAATGGTTAAAAGAAGGCAACATCTTGTGGGCCCAAATTCATCAACTTTAAAGGTTCATATAGCAGTATAGTTAAATGATTTCCAGCCTTACTAAATTTCTCCTGCTTTAATAAAGAAATCTCACTTCAGCATTCTTAGAGAGGGGCAATTGTGTTTATCTTGAAAAGTCCATGCTCTATTTCTTCTCTCTTATTTTTTAATTGTTATTGTAGCACAGGCGCTTGAAATATTGACAGGATGCTATATTCTTGTTCAGGTGCGTATATATATTTTTGCTTGTTACCTACTTCATCTCTTTCAGTCTTTCCTCTTCTGTAGTGCCAATTTGTTCCCGACAGGGCAATACAGTTGCTGCAATGGGTTCATTCAAAGGTTTAAAGCAAGTCAGGAGGATAGTGGAAGACTGTATGCTGAATAAAATGCATCCTGTATACAATATTAAGGTTTCCGGGTTTAATTTTGTAAAGTGTTTTATGTTACTCCACAACAGTTCTCTGCGTAACTTGCAATCTCTGCAGATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTCGCAAATGAAAATTGGGATAGGTTTCTTCCAAAATTCAAGAGGTATTCCATTTAGACATGAACTTGTTTGCCGATTTTCTTGTGCTAGGATCATGTATATATTCTTACGTAACCATCTTCTTTGTCAGGAAAACTGTTAAACAAAAGAAGGCCAAGAGTAAAGAGAAGAAGCCGTATACACCTTTTCCTCCTCCTCAGCAACCTAGCAAGGTGCGATAGCTGCCTTTCACTCCTAGAGGCGCAGCATTTGTGTACTTATATTTTTAAGAGGGAATTATGGAAATAGCATAATAATATGGTACATAATACTATAATAGTTTATAGTAGTCTATTCTCAAAATTACAATAATAACAAAAATGTAGAAAAAGAAACAGGCCACAACATATTGGATGCCATATTTAAACCATATTCTATGTGGAGATTATAGGGGGGATTAAACATAGACATTTTCAAATTCTTCTTTTCTAGATTTCTTCATTTCAATAAATTTTTTTTTTCAATACCATGCATTTACAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAAAAAGAAGTCAGCAAAGAAATGGCAGGAGAAGCAGGAGAAGCAGGCAGAAAAAACTGCTGAGAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGTCGTATATTGGAGCTCCTTGATTCAGCTTCTCCAATCTTTTGAAAATTTTCGTTTTTTCTACTAGTATACGTCCTCTAATGCTTTCAGTGATATTGGTTGTATCCATTCAGGAGCCTCCGAAGCAGGATACCAAATCTGATGGGGATAACAACGATATAGCCACAATGGCAAAGGCCCTGAAGGTATTACGAGTCATATGCTTTCTCTGCGTTTTGTGTGTATACAAATATTAGCCATGGATACTCCAAGAAGATTTTTCAACTGGAAATGGCCGCCCAAGCCATTTTTTTGAGAATGTGGTTTGTGACTGGTGATGGTGTTGCTTTGCAGGAAAAGGCGAAGGCATTAGGGAAACGAAAAGCTGCGGAAACTATCAATGCGGAATCTTATATTGCCTCATCTAGCAATCAGCCGCATTTCAAAAAGAAATCCAAGACT TACGCGGATGTTGAGCAACAGCAAGGGAAAAAGAAGCATAAGGGCAAGCACGACAAGCCGAAGCCATGGGATGAAGATCCTAATATTGACCGCTGGAAAGTCGACAAGTTTGATCCCTCCTGGAATGAAGGCGGCATGCTCGAAGTCAGCTCCTTCTCTACTCTGTTTCCCGAGTACAGAGGCAAGGAATTTCGACAAGCATGGCCGATTGTTAAGTCTGCGTTGAAAGAGTTTGGTGTTGCCTGTGAGCTGAATCTGGTTGAAGGATCAATGACGGTTTCAACAACCAGGAAGACTAGGGATCCATATATTATTGTCAAGGCAAGGGATCTTATCAAACTCTTGTCAAGAAGCGTACCTGCTCCTCAGGCAATTAAAATACTGGACGATGAAATGCAATGTGATATCATTAAGATTGGGAATTTGGTAGGCAAGAAGGCGCTTGAAATATTGACAGGATGCTATATTCTTGTTCAGGGCAATACAGTTGCTGCAATGGGTTCATTCAAAGGTTTAAAGCAAGTCAGGAGGATAGTGGAAGACTGTATGCTGAATAAAATGCATCCTATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTCGCAAATGAAAATTGGGATAGGTTTCTTCCAAAATTCAAGAGGAAAACTGTTAAACAAAAGAAGGCCAAGAGTAAAGAGAAGAAGCCGTATACACCTTTTCCTCCTCCTCAGCAACCTAGCAAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAAAAAGAAGTCAGCAAAGAAATGGCAGGAGAAGCAGGAGAAGCAGGCAGAAAAAACTGCTGAGAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGAGCCTCCGAAGCAGGATACCAAATCTGATGGGGATAACAACGATATAGCCACAATGGCAAAGGCCCTGAAGGAAAAGGCGAAGGCATTAGGGAAACGAAAAGCTGCGGAAACTATCAATGCGGAATCTTATATTGCCTCATCTAGCAATCAGCCGCATTTCAAAAAGAAATCCAAGACT TACGCGGATGTTGAGCAACAGCAAGGGAAAAAGAAGCATAAGGGCAAGCACGACAAGCCGAAGCCATGGGATGAAGATCCTAATATTGACCGCTGGAAAGTCGACAAGTTTGATCCCTCCTGGAATGAAGGCGGCATGCTCGAAGTCAGCTCCTTCTCTACTCTGTTTCCCGAGTACAGAGGCAAGGAATTTCGACAAGCATGGCCGATTGTTAAGTCTGCGTTGAAAGAGTTTGGTGTTGCCTGTGAGCTGAATCTGGTTGAAGGATCAATGACGGTTTCAACAACCAGGAAGACTAGGGATCCATATATTATTGTCAAGGCAAGGGATCTTATCAAACTCTTGTCAAGAAGCGTACCTGCTCCTCAGGCAATTAAAATACTGGACGATGAAATGCAATGTGATATCATTAAGATTGGGAATTTGGTAGGCAAGAAGGCGCTTGAAATATTGACAGGATGCTATATTCTTGTTCAGGGCAATACAGTTGCTGCAATGGGTTCATTCAAAGGTTTAAAGCAAGTCAGGAGGATAGTGGAAGACTGTATGCTGAATAAAATGCATCCTATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTCGCAAATGAAAATTGGGATAGGTTTCTTCCAAAATTCAAGAGGAAAACTGTTAAACAAAAGAAGGCCAAGAGTAAAGAGAAGAAGCCGTATACACCTTTTCCTCCTCCTCAGCAACCTAGCAAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAAAAAGAAGTCAGCAAAGAAATGGCAGGAGAAGCAGGAGAAGCAGGCAGAAAAAACTGCTGAGAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGAGCCTCCGAAGCAGGATACCAAATCTGATGGGGATAACAACGATATAGCCACAATGGCAAAGGCCCTGAAGGAAAAGGCGAAGGCATTAGGGAAACGAAAAGCTGCGGAAACTATCAATGCGGAATCTTATATTGCCTCATCTAGCAATCAGCCGCATTTCAAAAAGAAATCCAAGACT YADVEQQQGKKKHKGKHDKPKPWDEDPNIDRWKVDKFDPSWNEGGMLEVSSFSTLFPEYRGKEFRQAWPIVKSALKEFGVACELNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVGKKALEILTGCYILVQGNTVAAMGSFKGLKQVRRIVEDCMLNKMHPILMMKKELANDPALANENWDRFLPKFKRKTVKQKKAKSKEKKPYTPFPPPQQPSKIDIQLETGEYFLSDKKKSAKKWQEKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKSDGDNNDIATMAKALKEKAKALGKRKAAETINAESYIASSSNQPHFKKKSKT Homology
BLAST of MS006412 vs. NCBI nr
Match: XP_022148021.1 (KRR1 small subunit processome component [Momordica charantia]) HSP 1 Score: 652.5 bits (1682), Expect = 2.1e-183 Identity = 345/376 (91.76%), Postives = 347/376 (92.29%), Query Frame = 0
BLAST of MS006412 vs. NCBI nr
Match: XP_023511730.1 (KRR1 small subunit processome component homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 605.5 bits (1560), Expect = 2.9e-169 Identity = 318/373 (85.25%), Postives = 334/373 (89.54%), Query Frame = 0
BLAST of MS006412 vs. NCBI nr
Match: KAG7012057.1 (mis3 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 604.7 bits (1558), Expect = 4.9e-169 Identity = 317/372 (85.22%), Postives = 333/372 (89.52%), Query Frame = 0
BLAST of MS006412 vs. NCBI nr
Match: XP_022952886.1 (KRR1 small subunit processome component homolog [Cucurbita moschata] >XP_022952887.1 KRR1 small subunit processome component homolog [Cucurbita moschata]) HSP 1 Score: 604.7 bits (1558), Expect = 4.9e-169 Identity = 317/373 (84.99%), Postives = 334/373 (89.54%), Query Frame = 0
BLAST of MS006412 vs. NCBI nr
Match: XP_038888683.1 (KRR1 small subunit processome component homolog [Benincasa hispida] >XP_038888684.1 KRR1 small subunit processome component homolog [Benincasa hispida] >XP_038888685.1 KRR1 small subunit processome component homolog [Benincasa hispida] >XP_038888686.1 KRR1 small subunit processome component homolog [Benincasa hispida]) HSP 1 Score: 602.8 bits (1553), Expect = 1.9e-168 Identity = 313/374 (83.69%), Postives = 332/374 (88.77%), Query Frame = 0
BLAST of MS006412 vs. ExPASy Swiss-Prot
Match: O74777 (KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mis3 PE=3 SV=1) HSP 1 Score: 310.1 bits (793), Expect = 3.3e-83 Identity = 172/307 (56.03%), Postives = 220/307 (71.66%), Query Frame = 0
BLAST of MS006412 vs. ExPASy Swiss-Prot
Match: B3LU25 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11-1a) OX=285006 GN=KRR1 PE=3 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 6.4e-79 Identity = 169/306 (55.23%), Postives = 212/306 (69.28%), Query Frame = 0
BLAST of MS006412 vs. ExPASy Swiss-Prot
Match: B5VEQ2 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain AWRI1631) OX=545124 GN=KRR1 PE=3 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 6.4e-79 Identity = 169/306 (55.23%), Postives = 212/306 (69.28%), Query Frame = 0
BLAST of MS006412 vs. ExPASy Swiss-Prot
Match: C8Z430 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) OX=643680 GN=KRR1 PE=3 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 6.4e-79 Identity = 169/306 (55.23%), Postives = 212/306 (69.28%), Query Frame = 0
BLAST of MS006412 vs. ExPASy Swiss-Prot
Match: P25586 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KRR1 PE=1 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 6.4e-79 Identity = 169/306 (55.23%), Postives = 212/306 (69.28%), Query Frame = 0
BLAST of MS006412 vs. ExPASy TrEMBL
Match: A0A6J1D441 (KRR1 small subunit processome component OS=Momordica charantia OX=3673 GN=LOC111016809 PE=3 SV=1) HSP 1 Score: 652.5 bits (1682), Expect = 9.9e-184 Identity = 345/376 (91.76%), Postives = 347/376 (92.29%), Query Frame = 0
BLAST of MS006412 vs. ExPASy TrEMBL
Match: A0A6J1GLG6 (KRR1 small subunit processome component OS=Cucurbita moschata OX=3662 GN=LOC111455438 PE=3 SV=1) HSP 1 Score: 604.7 bits (1558), Expect = 2.4e-169 Identity = 317/373 (84.99%), Postives = 334/373 (89.54%), Query Frame = 0
BLAST of MS006412 vs. ExPASy TrEMBL
Match: A0A6J1HWB5 (KRR1 small subunit processome component OS=Cucurbita maxima OX=3661 GN=LOC111468435 PE=3 SV=1) HSP 1 Score: 602.4 bits (1552), Expect = 1.2e-168 Identity = 316/373 (84.72%), Postives = 334/373 (89.54%), Query Frame = 0
BLAST of MS006412 vs. ExPASy TrEMBL
Match: A0A5D3CP78 (KRR1 small subunit processome component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00300 PE=3 SV=1) HSP 1 Score: 585.9 bits (1509), Expect = 1.1e-163 Identity = 311/375 (82.93%), Postives = 328/375 (87.47%), Query Frame = 0
BLAST of MS006412 vs. ExPASy TrEMBL
Match: A0A0A0K7G6 (KRR1 small subunit processome component OS=Cucumis sativus OX=3659 GN=Csa_7G237820 PE=3 SV=1) HSP 1 Score: 582.4 bits (1500), Expect = 1.3e-162 Identity = 308/375 (82.13%), Postives = 328/375 (87.47%), Query Frame = 0
BLAST of MS006412 vs. TAIR 10
Match: AT5G08420.1 (RNA-binding KH domain-containing protein ) HSP 1 Score: 470.3 bits (1209), Expect = 1.3e-132 Identity = 253/371 (68.19%), Postives = 293/371 (78.98%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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