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MS006410 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTGATTAATAAAATGAACGACCGAATTGCAGTGGCGTACCCGGCGCCTCCTCCGTCGTATCCGGCGGCGGAGCAATTTAAGGGTCCTTATGTGACGGCTCCGCCGCCCGTTGGGTATCCGGTGAAGGACGCTCCTGTTGAGTACCCTCACCAAACTTCCCAAACTCAATCCAGAGGAGATGGCTTCTGGAAAGGATGGTCAGTATCTCTCTCTCTGATCAACTTTTGTTAGAACAATATTTGCCCTAGATTTTAAAATTAAACCGTTTATCATATTTACTAAATTATGGTTTTTTTTTTTTTTTTTTCTCCTTGTAGCTGCGCTGCCCTGTGTTGCTGCTGGGTATTGGATTGCGTCTTCTGATAAA GTGATTAATAAAATGAACGACCGAATTGCAGTGGCGTACCCGGCGCCTCCTCCGTCGTATCCGGCGGCGGAGCAATTTAAGGGTCCTTATGTGACGGCTCCGCCGCCCGTTGGGTATCCGGTGAAGGACGCTCCTGTTGAGTACCCTCACCAAACTTCCCAAACTCAATCCAGAGGAGATGGCTTCTGGAAAGGATGGTCAGTATCTCTCTCTCTGATCAACTTTTGTACAATATTTGCCCTAGATTTTAAAATTAAACCGTTTATCATATTTACTAAATTATGGTTTTTTTTTTTTTTTTTTCTCCTTGTAGCTGCGCTGCCCTGTGTTGCTGCTGGGTATTGGATTGCGTCTTCTGATAAA GTGATTAATAAAATGAACGACCGAATTGCAGTGGCGTACCCGGCGCCTCCTCCGTCGTATCCGGCGGCGGAGCAATTTAAGGGTCCTTATGTGACGGCTCCGCCGCCCGTTGGGTATCCGGTGAAGGACGCTCCTGTTGAGTACCCTCACCAAACTTCCCAAACTCAATCCAGAGGAGATGGCTTCTGGAAAGGATGGTCAGTATCTCTCTCTCTGATCAACTTTTGTACAATATTTGCCCTAGATTTTAAAATTAAACCGTTTATCATATTTACTAAATTATGGTTTTTTTTTTTTTTTTTTCTCCTTGTAGCTGCGCTGCCCTGTGTTGCTGCTGGGTATTGGATTGCGTCTTCTGATAAA VINKMNDRIAVAYPAPPPSYPAAEQFKGPYVTAPPPVGYPVKDAPVEYPHQTSQTQSRGDGFWKGWSVSLSLINFCTIFALDFKIKPFIIFTKLWFFFFFFLLVAALPCVAAGYWIASSDK Homology
BLAST of MS006410 vs. NCBI nr
Match: XP_022148046.1 (cysteine-rich and transmembrane domain-containing protein B-like [Momordica charantia]) HSP 1 Score: 122.1 bits (305), Expect = 3.3e-24 Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 0
BLAST of MS006410 vs. NCBI nr
Match: KAE8646099.1 (hypothetical protein Csa_015748 [Cucumis sativus]) HSP 1 Score: 116.3 bits (290), Expect = 1.8e-22 Identity = 70/127 (55.12%), Postives = 83/127 (65.35%), Query Frame = 0
BLAST of MS006410 vs. NCBI nr
Match: KAG7023002.1 (hypothetical protein SDJN02_16738, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 99.0 bits (245), Expect = 3.0e-17 Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 0
BLAST of MS006410 vs. NCBI nr
Match: XP_022989101.1 (cysteine-rich and transmembrane domain-containing protein B-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15 Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0
BLAST of MS006410 vs. NCBI nr
Match: XP_011659032.1 (cysteine-rich and transmembrane domain-containing protein WIH2 [Cucumis sativus]) HSP 1 Score: 91.7 bits (226), Expect = 4.8e-15 Identity = 50/84 (59.52%), Postives = 57/84 (67.86%), Query Frame = 0
BLAST of MS006410 vs. ExPASy TrEMBL
Match: A0A6J1D469 (cysteine-rich and transmembrane domain-containing protein B-like OS=Momordica charantia OX=3673 GN=LOC111016829 PE=3 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.6e-24 Identity = 59/74 (79.73%), Postives = 62/74 (83.78%), Query Frame = 0
BLAST of MS006410 vs. ExPASy TrEMBL
Match: A0A6J1JJ37 (cysteine-rich and transmembrane domain-containing protein B-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486275 PE=3 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 1.0e-15 Identity = 50/80 (62.50%), Postives = 57/80 (71.25%), Query Frame = 0
BLAST of MS006410 vs. ExPASy TrEMBL
Match: A0A0A0K5N8 (CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G237300 PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15 Identity = 50/84 (59.52%), Postives = 57/84 (67.86%), Query Frame = 0
BLAST of MS006410 vs. ExPASy TrEMBL
Match: A0A5A7USJ3 (Cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00200 PE=3 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 5.2e-15 Identity = 50/84 (59.52%), Postives = 56/84 (66.67%), Query Frame = 0
BLAST of MS006410 vs. ExPASy TrEMBL
Match: A0A1S3BHK1 (cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo OX=3656 GN=LOC103489653 PE=3 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 5.2e-15 Identity = 50/84 (59.52%), Postives = 56/84 (66.67%), Query Frame = 0
BLAST of MS006410 vs. TAIR 10
Match: AT3G22240.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits to 177 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 4.3e-06 Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 0
BLAST of MS006410 vs. TAIR 10
Match: AT2G32190.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32210.1); Has 74 Blast hits to 74 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05 Identity = 32/68 (47.06%), Postives = 37/68 (54.41%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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