Homology
BLAST of MS006404 vs. NCBI nr
Match:
XP_022147962.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia])
HSP 1 Score: 908.7 bits (2347), Expect = 3.2e-260
Identity = 469/477 (98.32%), Postives = 470/477 (98.53%), Query Frame = 0
Query: 226 MFLLSRNQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEP 285
MFLLSRNQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEP
Sbjct: 1 MFLLSRNQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEP 60
Query: 286 SKSVPVSIITQKREVLRIPTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEE 345
SKSVPVSIITQKREVLRIPTRPI LIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEE
Sbjct: 61 SKSVPVSIITQKREVLRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEE 120
Query: 346 QLSYQGENCRQRAADQLVKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFK 405
QLSYQGENCRQRAADQLVKLLMISR HKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFK
Sbjct: 121 QLSYQGENCRQRAADQLVKLLMISRFHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFK 180
Query: 406 VVGHQNFASGSGDTRALELVCWNNELATSVLEKMAAKAETSVSKGMPISFPMKFSNGFEM 465
VVGHQNFASGSGDTRALELVCWNNELATSVLEKMAAKAET VSKGMPISFPMKFSNGFEM
Sbjct: 181 VVGHQNFASGSGDTRALELVCWNNELATSVLEKMAAKAETGVSKGMPISFPMKFSNGFEM 240
Query: 466 DKKFKKWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILF 525
DKKFKKWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETIL
Sbjct: 241 DKKFKKWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILS 300
Query: 526 IGEYFGLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHL 585
IGEYFGLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHL
Sbjct: 301 IGEYFGLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHL 360
Query: 586 MNTVKEDSKTTTEQGGTRQQKKEEKEQSDDATRKENEAELLDSSDEEAEDDSSNLNARAD 645
MNTVKEDSKTTTEQGGT QQKKEEKE+SDDATRKENEAELLDSSDEEAEDDSSNLNARAD
Sbjct: 361 MNTVKEDSKTTTEQGGTCQQKKEEKERSDDATRKENEAELLDSSDEEAEDDSSNLNARAD 420
Query: 646 RKEAAGGRRRHVAFQENVGRNRVRSSKRMNSTSGRPSRDVKRERLNNSKGYQVRTKV 703
RKEAAGGRRRHV FQENVGRNRVRSSKRMNSTSGRPSRDVKRER NNSKGYQVRTKV
Sbjct: 421 RKEAAGGRRRHVDFQENVGRNRVRSSKRMNSTSGRPSRDVKRERSNNSKGYQVRTKV 477
BLAST of MS006404 vs. NCBI nr
Match:
KAG7012049.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 804.7 bits (2077), Expect = 6.4e-229
Identity = 474/802 (59.10%), Postives = 545/802 (67.96%), Query Frame = 0
Query: 19 GEIGESRKLFDKMPERNPISWNSMIGGYVRNGMFKEALKLFVKMQEEKIKPSEFTMVSLL 78
G++ KLFDKMP RNPISWNSMIGGYVRNGMFKEALKLFVKMQEE I+PSEF+MVSLL
Sbjct: 42 GKLVSRGKLFDKMPVRNPISWNSMIGGYVRNGMFKEALKLFVKMQEESIQPSEFSMVSLL 101
Query: 79 NASAHIGALRQGEWIHEYIEKNNLELNPIVVTAII------------------------- 138
NAS IGAL +EY++K NLEL+ V TAII
Sbjct: 102 NASTQIGALSARRMENEYVKKKNLELSANVATAIIDIEWLRKGSSLKPDSVSFMENEGSG 161
Query: 139 ----------------------DMYCKCGSIVNALQVFEKMP------SRGL----SSWN 198
DM+ + G + A Q+ + MP RG+ + N
Sbjct: 162 FFSPTKNTYRIDASTKHYNLTVDMFSRAGFLEEAEQLLKTMPIKADAIIRGVTVCRTYGN 221
Query: 199 SMIFGLAVNGCENEAILLFRMLE-------------SSSLEPDS-------ERVSMRMKN 258
+ + A + L+RM + ++ PD R +
Sbjct: 222 TEMVKRAAEKVNEWVMFLWRMFMLDDEGLTEAQAEFTGTIRPDILAQKLPWARTASNQSQ 281
Query: 259 VEKEPG----GSLIEV--------------DGEVHEFIAGG------GRLHPKAQE-IYI 318
+ P L+ V + F+A R P Q +
Sbjct: 282 RQSSPSFVLFSRLVAVPLALVRCRLLFSRSPLDSPSFLASSYQTSTFSRPSPSPQNFLLF 341
Query: 319 VLDQLGRCTMFLLSRNQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMN 378
L + T ++ +QQ H+F + +RTYVDGTIKWVRDRGLDHAVEREKNLLPVMN
Sbjct: 342 FLFRHPPSTASAGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMN 401
Query: 379 IKDFIKSEPSKSVPVSIITQKREVLRIPTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTS 438
IK+FIKSEPSKSVPVSIITQKREVLRIPTRPI LIRKYP+IFEEFLPGGIGIQPHVRLTS
Sbjct: 402 IKNFIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTS 461
Query: 439 QVLELDAEEQLSYQGENCRQRAADQLVKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSI 498
QVLELDAEEQL+YQ E CRQ+AAD+LVKLLM+SRVHKIPLSIIDQLKW+LGLPKDYVQSI
Sbjct: 462 QVLELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSI 521
Query: 499 VPDFPDYFKVVGHQNFASGSGDTRALELVCWNNELATSVLEKMAAKAET-SVSKGMPISF 558
VP+FPDYFKVVGHQNFASG G +ALELVCW+NELATSVLEKMAAK + S SKG+ ++F
Sbjct: 522 VPEFPDYFKVVGHQNFASGWGTMQALELVCWSNELATSVLEKMAAKGKPGSTSKGIHVTF 581
Query: 559 PMKFSNGFEMDKKFKKWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIA 618
PMK+SNGFEMDKKFKKWVDEWQKLPYISPYENA+HL P+SDESDKW+VAILHE LHML+
Sbjct: 582 PMKYSNGFEMDKKFKKWVDEWQKLPYISPYENATHLPPNSDESDKWSVAILHEFLHMLVT 641
Query: 619 KKIEKETILFIGEYFGLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPL 678
KK EKET+L IGEYFGLRSRFKRALLHHPGIFYLSSK GTYTVVLKE YKRGSVIE+SPL
Sbjct: 642 KKTEKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPL 701
Query: 679 INIRNKYLHLMNTVKEDSKTTTEQGGTRQQKKEEKEQSDDATRKENEAELLDSSDE---- 703
+ IRNKYLHLMNTVKEDSKTT+E TRQQK+E+KE SDD + K+NEAEL +S DE
Sbjct: 702 MIIRNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDE 761
BLAST of MS006404 vs. NCBI nr
Match:
XP_022952527.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata])
HSP 1 Score: 717.2 bits (1850), Expect = 1.4e-202
Identity = 381/483 (78.88%), Postives = 420/483 (86.96%), Query Frame = 0
Query: 232 NQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPV 291
++ +QQ H+F + +RTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIK+FIKSEPSKSVPV
Sbjct: 13 HKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPV 72
Query: 292 SIITQKREVLRIPTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQG 351
SIITQKREVLRIPTRPI LIRKYP+IFEEFLPGGIGIQPHVRLTSQVLELDAEEQL+YQ
Sbjct: 73 SIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQS 132
Query: 352 ENCRQRAADQLVKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQN 411
E CRQ+AAD+LVKLLM+SRVHKIPLSIIDQLKW+LGLPKDYVQSIVP+FPDYFKVVGHQN
Sbjct: 133 EICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQN 192
Query: 412 FASGSGDTRALELVCWNNELATSVLEKMAAKAET-SVSKGMPISFPMKFSNGFEMDKKFK 471
FASG G +ALELVCWNNELATSVLEKMAAK + S SKGMPI+FPMK+SNGFEMDKKFK
Sbjct: 193 FASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFK 252
Query: 472 KWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYF 531
KWVDEWQKLPYISPY NA+HL P+SDESDKW+VAILHE LHML+ KK EKET+L IGEYF
Sbjct: 253 KWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYF 312
Query: 532 GLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVK 591
GLRSRFKRALLHHPGIFYLSSK GTYTVVLKE YKRGSVIE+SPL+ IRNKYLHLMNTVK
Sbjct: 313 GLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVK 372
Query: 592 EDSKTTTEQGGTRQQKKEEKEQSDDATRKENEAELLDSSDE---------EAEDDSSNLN 651
EDSKTT+E TRQQK+E+KE SDD + K+NEAEL +S DE E E+ SSN N
Sbjct: 373 EDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEEDQGEDENASSNQN 432
Query: 652 ARADRKEAAGGRRRHVAFQENVGRNRVRSSKRMNSTSGRPS--RDVKRERLNNSKGYQVR 703
+ADRKE G +RHV +EN R+R+RSSKR N ++ RPS RD KRER N SK VR
Sbjct: 433 IQADRKE-DGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRERSNMSKRSSVR 492
BLAST of MS006404 vs. NCBI nr
Match:
XP_023554109.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo] >XP_023554110.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 714.5 bits (1843), Expect = 8.8e-202
Identity = 381/495 (76.97%), Postives = 422/495 (85.25%), Query Frame = 0
Query: 232 NQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPV 291
++ +QQ H+F + +RTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIK+FIKSEPSKSVPV
Sbjct: 13 HKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPV 72
Query: 292 SIITQKREVLRIPTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQG 351
SIITQKREVLRIPTRPI LIRKYP+IFEEFLPGGIGIQPHVRLTSQVLELDAEEQL+YQ
Sbjct: 73 SIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQS 132
Query: 352 ENCRQRAADQLVKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQN 411
E CRQ+AAD+LVKLLM+SRVHKIPLSIIDQLKW+LGLPKDYVQSIVP+FPDYFKVVGHQN
Sbjct: 133 EICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQN 192
Query: 412 FASGSGDTRALELVCWNNELATSVLEKMAAKAET-SVSKGMPISFPMKFSNGFEMDKKFK 471
FASG G +ALELVCW+NELATSVLEKMAAK + S SKGM ++FPMK+SNGFEMDKKFK
Sbjct: 193 FASGWGTMQALELVCWSNELATSVLEKMAAKGKPGSTSKGMHVTFPMKYSNGFEMDKKFK 252
Query: 472 KWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYF 531
KWVDEWQKLPYISPYENA+HL P+SDESDKW+VAILHE LHMLI KK EKET+L IGEYF
Sbjct: 253 KWVDEWQKLPYISPYENATHLPPNSDESDKWSVAILHEFLHMLITKKTEKETVLGIGEYF 312
Query: 532 GLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVK 591
GLRSRFKRALLHHPGIFYLSSK GTYTVVLKE YKRGSVIE+SPL+ IRNKYLHLMNTVK
Sbjct: 313 GLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVK 372
Query: 592 EDSKTTTEQGGTRQQKKEEKEQSDDATRKENEAELLDSSDE------------EAEDDSS 651
ED KTT+E TRQQK+E+KE SDD + K+NEAEL +SSD+ E ED SS
Sbjct: 373 EDGKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSDDEDDEEDEEEDQGEDEDASS 432
Query: 652 NLNARADRKEAAGGRRRHVAFQENVGRNRVRSSKRMNSTSGRPS-----------RDVKR 703
N N +ADRKE G +R+V +EN R+R+RSSKR NS++ RPS RD KR
Sbjct: 433 NHNIQADRKE-DGPSKRYVDLKENAVRDRMRSSKRKNSSAKRPSRDRDAKRPSRDRDAKR 492
BLAST of MS006404 vs. NCBI nr
Match:
XP_022969363.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X4 [Cucurbita maxima])
HSP 1 Score: 710.7 bits (1833), Expect = 1.3e-200
Identity = 380/483 (78.67%), Postives = 419/483 (86.75%), Query Frame = 0
Query: 232 NQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPV 291
++ +QQ H+F + +RTY DGTIKWVRDRGLDHAVEREKNLLPVMNIK+FIKSEPSKSVPV
Sbjct: 13 HKCRQQSHVFQISLRTYADGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPV 72
Query: 292 SIITQKREVLRIPTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQG 351
SIITQKREVLRIPTRPI LIRKYP+IFEEFLPGGIGIQPHVRLTSQVLELDAEEQL+ Q
Sbjct: 73 SIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTNQS 132
Query: 352 ENCRQRAADQLVKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQN 411
E CRQ+AAD+LVKLLM+SRVHKIPLSIIDQLKW+LGLPKDYVQSIVP+FPDYFKVVGHQN
Sbjct: 133 EICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQN 192
Query: 412 FASGSGDTRALELVCWNNELATSVLEKMAAKAET-SVSKGMPISFPMKFSNGFEMDKKFK 471
FASG G +ALELVCWNNELATSVLEKMAAK + S SKGM I+FPM +SNGFEMDKKFK
Sbjct: 193 FASGWGTKQALELVCWNNELATSVLEKMAAKGKPGSTSKGMHITFPMNYSNGFEMDKKFK 252
Query: 472 KWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYF 531
KWVDEWQKLPYISPYE+A+HL PSSDESDKW+VAILHE LHML+ KK EKET+L IGEYF
Sbjct: 253 KWVDEWQKLPYISPYESATHLPPSSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYF 312
Query: 532 GLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVK 591
GLRSRFKRALLHHPGIFYLSSK GTYTVVLKE YKRGSVIE+SPL+ IRNKYLHLMNTVK
Sbjct: 313 GLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVK 372
Query: 592 EDSKTT-TEQGGTRQQKKEEKEQSDDATRKENEAELLDSS--------DEEAEDDSSNLN 651
EDSKTT +E TRQQK+E+KE SDD + K+NEAEL +SS + E ED SSN N
Sbjct: 373 EDSKTTSSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSANEDEDEDEGEGEDASSNHN 432
Query: 652 ARADRKEAAGGRRRHVAFQENVGRNRVRSSKRMNSTSGRPS--RDVKRERLNNSKGYQVR 703
+ADRKE G +RHV +EN R+R+RSSKR NS++ RPS RD KRER N SK Y VR
Sbjct: 433 IQADRKE-DGRSKRHVDLKENAVRDRMRSSKRKNSSAKRPSRDRDAKRERSNMSKRYSVR 492
BLAST of MS006404 vs. ExPASy Swiss-Prot
Match:
Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)
HSP 1 Score: 231.5 bits (589), Expect = 3.0e-59
Identity = 111/170 (65.29%), Postives = 129/170 (75.88%), Query Frame = 0
Query: 3 FDAVAWNSMIMGVAKCGEIGESRKLFDKMPERNPISWNSMIGGYVRNGMFKEALKLFVKM 62
FD VAWNSMIMG AKCG I +++ LFD+MP+RN +SWNSMI G+VRNG FK+AL +F +M
Sbjct: 190 FDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM 249
Query: 63 QEEKIKPSEFTMVSLLNASAHIGALRQGEWIHEYIEKNNLELNPIVVTAIIDMYCKCGSI 122
QE+ +KP FTMVSLLNA A++GA QG WIHEYI +N ELN IVVTA+IDMYCKCG I
Sbjct: 250 QEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCI 309
Query: 123 VNALQVFEKMPSRGLSSWNSMIFGLAVNGCENEAILLFRMLESSSLEPDS 173
L VFE P + LS WNSMI GLA NG E A+ LF LE S LEPDS
Sbjct: 310 EEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDS 359
BLAST of MS006404 vs. ExPASy Swiss-Prot
Match:
Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)
HSP 1 Score: 216.1 bits (549), Expect = 1.3e-54
Identity = 131/368 (35.60%), Postives = 203/368 (55.16%), Query Frame = 0
Query: 246 RTYVDGTIKWVRDRGLDHA--VEREKNLLPVMNIKDFIKSEPSKSVPVSIITQKREVLRI 305
RTYVD +KW RD D+ + R L V+++K+ I EP++ +P+S I++K +
Sbjct: 22 RTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDV 81
Query: 306 PTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQGENCRQRAADQLV 365
T+ H +RK+PSIFEEF+ + P RLT + ELD +E++ YQ D+L
Sbjct: 82 STKIAHFLRKFPSIFEEFVGPEYNL-PWFRLTPEATELDRQERVVYQ--TSADDLRDRLK 141
Query: 366 KLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGSGDTRALE 425
KL+++S+ + +PLSI+ +KW LGLP DY+Q FPD + F + L
Sbjct: 142 KLILMSKDNVLPLSIVQGMKWYLGLPDDYLQ-----FPD-MNLDSSFRFVDMEDGVKGLA 201
Query: 426 LVCWNNELATSVLEKMAAKAETSVSKGMPISFPMKFSNGFEMDKKFKKWVDEWQKLPYIS 485
+ + SVL+K A K I FP+ S G + K + W+ E+QKLPY+S
Sbjct: 202 VDYNGGDKVLSVLQKNAMKKRRGEVSLEEIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVS 261
Query: 486 PYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYFGLRSRFKRALLHH 545
PY++ S L PSSD ++K V LHELL + + E++ +L + ++FGL + +A H
Sbjct: 262 PYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERH 321
Query: 546 PGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVKEDSKTTTEQGGTR 605
P IFYLS KN T T +L+E Y+ + +E P++ +R KY+ LM + K+ G R
Sbjct: 322 PQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMKNSELILKSRRNSFGFR 380
Query: 606 QQKKEEKE 612
+ +K+
Sbjct: 382 DEGVVDKD 380
BLAST of MS006404 vs. ExPASy Swiss-Prot
Match:
Q38959 (Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-A6 PE=2 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 1.7e-38
Identity = 75/168 (44.64%), Postives = 114/168 (67.86%), Query Frame = 0
Query: 6 VAWNSMIMGVAKCGEIGESRKLFDKMPERNPISWNSMIGGYVRNGMFKEALKLFVKMQEE 65
V+W +M+ G+ ++ + +F++MP RN +SW +MI YV+N EA +LF +MQ +
Sbjct: 186 VSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVD 245
Query: 66 KIKPSEFTMVSLLNASAHIGALRQGEWIHEYIEKNNLELNPIVVTAIIDMYCKCGSIVNA 125
+KP+EFT+V+LL AS +G+L G W+H+Y KN L+ + TA+IDMY KCGS+ +A
Sbjct: 246 DVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDA 305
Query: 126 LQVFEKMPSRGLSSWNSMIFGLAVNGCENEAILLF-RMLESSSLEPDS 173
+VF+ M + L++WNSMI L V+GC EA+ LF M E +S+EPD+
Sbjct: 306 RKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDA 353
BLAST of MS006404 vs. ExPASy Swiss-Prot
Match:
Q9FG16 (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H88 PE=3 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 6.4e-38
Identity = 81/235 (34.47%), Postives = 135/235 (57.45%), Query Frame = 0
Query: 4 DAVAWNSMIMGVAKCGEIGESRKLFDKMPERNPISWNSMIGGYVRNGMFKEALKLFVKMQ 63
D V+W SM+ G KCG + +R++FD+MP RN +W+ MI GY +N F++A+ LF M+
Sbjct: 182 DVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMK 241
Query: 64 EEKIKPSEFTMVSLLNASAHIGALRQGEWIHEYIEKNNLELNPIVVTAIIDMYCKCGSIV 123
E + +E MVS++++ AH+GAL GE +EY+ K+++ +N I+ TA++DM+ +CG I
Sbjct: 242 REGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIE 301
Query: 124 NALQVFEKMPSRGLSSWNSMIFGLAVNGCENEAILLFRMLESSSLEPDSERVSMRMKNVE 183
A+ VFE +P SW+S+I GLAV+G ++A+ F + S P + +
Sbjct: 302 KAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACS 361
Query: 184 KEPGGSLIEVDGEVHEFIAGGGRLHPKAQEIYIVLDQLGRCTMFLLSRNQSQQQH 239
G L+E E++E + + P+ + ++D LGR + N + H
Sbjct: 362 H---GGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMH 413
BLAST of MS006404 vs. ExPASy Swiss-Prot
Match:
Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)
HSP 1 Score: 157.9 bits (398), Expect = 4.1e-37
Identity = 75/168 (44.64%), Postives = 108/168 (64.29%), Query Frame = 0
Query: 4 DAVAWNSMIMGVAKCGEIGESRKLFDKMPERNPISWNSMIGGYVRNGMFKEALKLFVKMQ 63
D ++W S++ G + G + +R FD+MP R+ ISW MI GY+R G F E+L++F +MQ
Sbjct: 301 DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQ 360
Query: 64 EEKIKPSEFTMVSLLNASAHIGALRQGEWIHEYIEKNNLELNPIVVTAIIDMYCKCGSIV 123
+ P EFTMVS+L A AH+G+L GEWI YI+KN ++ + +V A+IDMY KCG
Sbjct: 361 SAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSE 420
Query: 124 NALQVFEKMPSRGLSSWNSMIFGLAVNGCENEAILLFRMLESSSLEPD 172
A +VF M R +W +M+ GLA NG EAI +F ++ S++PD
Sbjct: 421 KAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPD 468
BLAST of MS006404 vs. ExPASy TrEMBL
Match:
A0A6J1D3S2 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Momordica charantia OX=3673 GN=LOC111016760 PE=4 SV=1)
HSP 1 Score: 908.7 bits (2347), Expect = 1.5e-260
Identity = 469/477 (98.32%), Postives = 470/477 (98.53%), Query Frame = 0
Query: 226 MFLLSRNQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEP 285
MFLLSRNQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEP
Sbjct: 1 MFLLSRNQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEP 60
Query: 286 SKSVPVSIITQKREVLRIPTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEE 345
SKSVPVSIITQKREVLRIPTRPI LIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEE
Sbjct: 61 SKSVPVSIITQKREVLRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEE 120
Query: 346 QLSYQGENCRQRAADQLVKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFK 405
QLSYQGENCRQRAADQLVKLLMISR HKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFK
Sbjct: 121 QLSYQGENCRQRAADQLVKLLMISRFHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFK 180
Query: 406 VVGHQNFASGSGDTRALELVCWNNELATSVLEKMAAKAETSVSKGMPISFPMKFSNGFEM 465
VVGHQNFASGSGDTRALELVCWNNELATSVLEKMAAKAET VSKGMPISFPMKFSNGFEM
Sbjct: 181 VVGHQNFASGSGDTRALELVCWNNELATSVLEKMAAKAETGVSKGMPISFPMKFSNGFEM 240
Query: 466 DKKFKKWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILF 525
DKKFKKWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETIL
Sbjct: 241 DKKFKKWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILS 300
Query: 526 IGEYFGLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHL 585
IGEYFGLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHL
Sbjct: 301 IGEYFGLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHL 360
Query: 586 MNTVKEDSKTTTEQGGTRQQKKEEKEQSDDATRKENEAELLDSSDEEAEDDSSNLNARAD 645
MNTVKEDSKTTTEQGGT QQKKEEKE+SDDATRKENEAELLDSSDEEAEDDSSNLNARAD
Sbjct: 361 MNTVKEDSKTTTEQGGTCQQKKEEKERSDDATRKENEAELLDSSDEEAEDDSSNLNARAD 420
Query: 646 RKEAAGGRRRHVAFQENVGRNRVRSSKRMNSTSGRPSRDVKRERLNNSKGYQVRTKV 703
RKEAAGGRRRHV FQENVGRNRVRSSKRMNSTSGRPSRDVKRER NNSKGYQVRTKV
Sbjct: 421 RKEAAGGRRRHVDFQENVGRNRVRSSKRMNSTSGRPSRDVKRERSNNSKGYQVRTKV 477
BLAST of MS006404 vs. ExPASy TrEMBL
Match:
A0A6J1GKN4 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC111455191 PE=4 SV=1)
HSP 1 Score: 717.2 bits (1850), Expect = 6.5e-203
Identity = 381/483 (78.88%), Postives = 420/483 (86.96%), Query Frame = 0
Query: 232 NQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPV 291
++ +QQ H+F + +RTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIK+FIKSEPSKSVPV
Sbjct: 13 HKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPV 72
Query: 292 SIITQKREVLRIPTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQG 351
SIITQKREVLRIPTRPI LIRKYP+IFEEFLPGGIGIQPHVRLTSQVLELDAEEQL+YQ
Sbjct: 73 SIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQS 132
Query: 352 ENCRQRAADQLVKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQN 411
E CRQ+AAD+LVKLLM+SRVHKIPLSIIDQLKW+LGLPKDYVQSIVP+FPDYFKVVGHQN
Sbjct: 133 EICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQN 192
Query: 412 FASGSGDTRALELVCWNNELATSVLEKMAAKAET-SVSKGMPISFPMKFSNGFEMDKKFK 471
FASG G +ALELVCWNNELATSVLEKMAAK + S SKGMPI+FPMK+SNGFEMDKKFK
Sbjct: 193 FASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFK 252
Query: 472 KWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYF 531
KWVDEWQKLPYISPY NA+HL P+SDESDKW+VAILHE LHML+ KK EKET+L IGEYF
Sbjct: 253 KWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYF 312
Query: 532 GLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVK 591
GLRSRFKRALLHHPGIFYLSSK GTYTVVLKE YKRGSVIE+SPL+ IRNKYLHLMNTVK
Sbjct: 313 GLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVK 372
Query: 592 EDSKTTTEQGGTRQQKKEEKEQSDDATRKENEAELLDSSDE---------EAEDDSSNLN 651
EDSKTT+E TRQQK+E+KE SDD + K+NEAEL +S DE E E+ SSN N
Sbjct: 373 EDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEEDQGEDENASSNQN 432
Query: 652 ARADRKEAAGGRRRHVAFQENVGRNRVRSSKRMNSTSGRPS--RDVKRERLNNSKGYQVR 703
+ADRKE G +RHV +EN R+R+RSSKR N ++ RPS RD KRER N SK VR
Sbjct: 433 IQADRKE-DGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRERSNMSKRSSVR 492
BLAST of MS006404 vs. ExPASy TrEMBL
Match:
A0A6J1I0R6 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111468390 PE=4 SV=1)
HSP 1 Score: 710.7 bits (1833), Expect = 6.1e-201
Identity = 380/483 (78.67%), Postives = 419/483 (86.75%), Query Frame = 0
Query: 232 NQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPV 291
++ +QQ H+F + +RTY DGTIKWVRDRGLDHAVEREKNLLPVMNIK+FIKSEPSKSVPV
Sbjct: 13 HKCRQQSHVFQISLRTYADGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPV 72
Query: 292 SIITQKREVLRIPTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQG 351
SIITQKREVLRIPTRPI LIRKYP+IFEEFLPGGIGIQPHVRLTSQVLELDAEEQL+ Q
Sbjct: 73 SIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTNQS 132
Query: 352 ENCRQRAADQLVKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQN 411
E CRQ+AAD+LVKLLM+SRVHKIPLSIIDQLKW+LGLPKDYVQSIVP+FPDYFKVVGHQN
Sbjct: 133 EICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQN 192
Query: 412 FASGSGDTRALELVCWNNELATSVLEKMAAKAET-SVSKGMPISFPMKFSNGFEMDKKFK 471
FASG G +ALELVCWNNELATSVLEKMAAK + S SKGM I+FPM +SNGFEMDKKFK
Sbjct: 193 FASGWGTKQALELVCWNNELATSVLEKMAAKGKPGSTSKGMHITFPMNYSNGFEMDKKFK 252
Query: 472 KWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYF 531
KWVDEWQKLPYISPYE+A+HL PSSDESDKW+VAILHE LHML+ KK EKET+L IGEYF
Sbjct: 253 KWVDEWQKLPYISPYESATHLPPSSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYF 312
Query: 532 GLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVK 591
GLRSRFKRALLHHPGIFYLSSK GTYTVVLKE YKRGSVIE+SPL+ IRNKYLHLMNTVK
Sbjct: 313 GLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVK 372
Query: 592 EDSKTT-TEQGGTRQQKKEEKEQSDDATRKENEAELLDSS--------DEEAEDDSSNLN 651
EDSKTT +E TRQQK+E+KE SDD + K+NEAEL +SS + E ED SSN N
Sbjct: 373 EDSKTTSSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSANEDEDEDEGEGEDASSNHN 432
Query: 652 ARADRKEAAGGRRRHVAFQENVGRNRVRSSKRMNSTSGRPS--RDVKRERLNNSKGYQVR 703
+ADRKE G +RHV +EN R+R+RSSKR NS++ RPS RD KRER N SK Y VR
Sbjct: 433 IQADRKE-DGRSKRHVDLKENAVRDRMRSSKRKNSSAKRPSRDRDAKRERSNMSKRYSVR 492
BLAST of MS006404 vs. ExPASy TrEMBL
Match:
A0A6J1HW55 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111468390 PE=4 SV=1)
HSP 1 Score: 709.1 bits (1829), Expect = 1.8e-200
Identity = 380/487 (78.03%), Postives = 419/487 (86.04%), Query Frame = 0
Query: 232 NQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPV 291
++ +QQ H+F + +RTY DGTIKWVRDRGLDHAVEREKNLLPVMNIK+FIKSEPSKSVPV
Sbjct: 13 HKCRQQSHVFQISLRTYADGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPV 72
Query: 292 SIITQKREVLRIPTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQG 351
SIITQKREVLRIPTRPI LIRKYP+IFEEFLPGGIGIQPHVRLTSQVLELDAEEQL+ Q
Sbjct: 73 SIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTNQS 132
Query: 352 ENCRQRAADQLVKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQN 411
E CRQ+AAD+LVKLLM+SRVHKIPLSIIDQLKW+LGLPKDYVQSIVP+FPDYFKVVGHQN
Sbjct: 133 EICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQN 192
Query: 412 FASGSGDTRALELVCWNNELATSVLEKMAAKAET-SVSKGMPISFPMKFSNGFEMDKKFK 471
FASG G +ALELVCWNNELATSVLEKMAAK + S SKGM I+FPM +SNGFEMDKKFK
Sbjct: 193 FASGWGTKQALELVCWNNELATSVLEKMAAKGKPGSTSKGMHITFPMNYSNGFEMDKKFK 252
Query: 472 KWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYF 531
KWVDEWQKLPYISPYE+A+HL PSSDESDKW+VAILHE LHML+ KK EKET+L IGEYF
Sbjct: 253 KWVDEWQKLPYISPYESATHLPPSSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYF 312
Query: 532 GLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVK 591
GLRSRFKRALLHHPGIFYLSSK GTYTVVLKE YKRGSVIE+SPL+ IRNKYLHLMNTVK
Sbjct: 313 GLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVK 372
Query: 592 EDSKTT-TEQGGTRQQKKEEKEQSDDATRKENEAELLDSS------------DEEAEDDS 651
EDSKTT +E TRQQK+E+KE SDD + K+NEAEL +SS + E ED S
Sbjct: 373 EDSKTTSSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSANEDEDEDEDEDEGEGEDAS 432
Query: 652 SNLNARADRKEAAGGRRRHVAFQENVGRNRVRSSKRMNSTSGRPS--RDVKRERLNNSKG 703
SN N +ADRKE G +RHV +EN R+R+RSSKR NS++ RPS RD KRER N SK
Sbjct: 433 SNHNIQADRKE-DGRSKRHVDLKENAVRDRMRSSKRKNSSAKRPSRDRDAKRERSNMSKR 492
BLAST of MS006404 vs. ExPASy TrEMBL
Match:
A0A6J1HXK3 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468390 PE=4 SV=1)
HSP 1 Score: 706.8 bits (1823), Expect = 8.8e-200
Identity = 380/493 (77.08%), Postives = 419/493 (84.99%), Query Frame = 0
Query: 232 NQSQQQHHLFHLYIRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPV 291
++ +QQ H+F + +RTY DGTIKWVRDRGLDHAVEREKNLLPVMNIK+FIKSEPSKSVPV
Sbjct: 13 HKCRQQSHVFQISLRTYADGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPV 72
Query: 292 SIITQKREVLRIPTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQG 351
SIITQKREVLRIPTRPI LIRKYP+IFEEFLPGGIGIQPHVRLTSQVLELDAEEQL+ Q
Sbjct: 73 SIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTNQS 132
Query: 352 ENCRQRAADQLVKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQN 411
E CRQ+AAD+LVKLLM+SRVHKIPLSIIDQLKW+LGLPKDYVQSIVP+FPDYFKVVGHQN
Sbjct: 133 EICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQN 192
Query: 412 FASGSGDTRALELVCWNNELATSVLEKMAAKAET-SVSKGMPISFPMKFSNGFEMDKKFK 471
FASG G +ALELVCWNNELATSVLEKMAAK + S SKGM I+FPM +SNGFEMDKKFK
Sbjct: 193 FASGWGTKQALELVCWNNELATSVLEKMAAKGKPGSTSKGMHITFPMNYSNGFEMDKKFK 252
Query: 472 KWVDEWQKLPYISPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYF 531
KWVDEWQKLPYISPYE+A+HL PSSDESDKW+VAILHE LHML+ KK EKET+L IGEYF
Sbjct: 253 KWVDEWQKLPYISPYESATHLPPSSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYF 312
Query: 532 GLRSRFKRALLHHPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVK 591
GLRSRFKRALLHHPGIFYLSSK GTYTVVLKE YKRGSVIE+SPL+ IRNKYLHLMNTVK
Sbjct: 313 GLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVK 372
Query: 592 EDSKTT-TEQGGTRQQKKEEKEQSDDATRKENEAELLDSS------------------DE 651
EDSKTT +E TRQQK+E+KE SDD + K+NEAEL +SS +
Sbjct: 373 EDSKTTSSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSSANEDEDEDEDEDEDEDEDEG 432
Query: 652 EAEDDSSNLNARADRKEAAGGRRRHVAFQENVGRNRVRSSKRMNSTSGRPS--RDVKRER 703
E ED SSN N +ADRKE G +RHV +EN R+R+RSSKR NS++ RPS RD KRER
Sbjct: 433 EGEDASSNHNIQADRKE-DGRSKRHVDLKENAVRDRMRSSKRKNSSAKRPSRDRDAKRER 492
BLAST of MS006404 vs. TAIR 10
Match:
AT1G71850.1 (Ubiquitin carboxyl-terminal hydrolase family protein )
HSP 1 Score: 445.7 bits (1145), Expect = 7.1e-125
Identity = 236/448 (52.68%), Postives = 316/448 (70.54%), Query Frame = 0
Query: 249 VDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVSIITQKREVLRIPTRPI 308
V+ T K+VRDRGLDHAVEREKNL P+++IKD I+SEP+KSVP+S+IT +++ LR+P RPI
Sbjct: 25 VEDTYKFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPI 84
Query: 309 HLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQGENCRQRAADQLVKLLMI 368
IR +PS+F+EFLPGGIGI PH+ LT ++L DA+EQL Y E +Q AD+L+KLLMI
Sbjct: 85 EFIRSFPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMI 144
Query: 369 SRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGSGDTRALELVCWN 428
+R++KIPL I+D LKWDLGLPKDYV+++VP+FPDYF+V+ SG+ LELVCW+
Sbjct: 145 NRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVI-KSKLRGCSGE---LELVCWS 204
Query: 429 NELATSVLEKMA-AKAETSVSKGMPISFPMKFSNGFEMDKKFKKWVDEWQKLPYISPYEN 488
NE A SVLEK A + +KG I+FPMKFSNGF +DKK KKW+D+WQKLPYISPYEN
Sbjct: 205 NEHAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYEN 264
Query: 489 ASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYFGLRSRFKRALLHHPGIF 548
A HLS +SDESDKWA A+LHE++++ ++KK+EK+ IL +GE+ GLRSRFKR L +HPGIF
Sbjct: 265 ALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIF 324
Query: 549 YLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVKEDSKTTTEQGGTRQQKK 608
YLSSK T+TVVL++GYKRG +IE++ L+ RN+Y+ LMNTVK+D+K + + K
Sbjct: 325 YLSSKLRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLMNTVKKDNKAVSSSSKKEDKGK 384
Query: 609 EEKEQSDDATRKEN------------EAELLDSSDEEAEDDSSNLNARADRKEAAGGRRR 668
E E D + EN + + +D +++ E D + R R + RR
Sbjct: 385 VEGEVCDTDAKAENDDISGSDVEDDRQGDFVDDDEDDDEVDQNQDLERGRRNSSPRSGRR 444
Query: 669 HVAFQENVGRNRVRSSKRMNSTSGRPSR 684
+ + + R SK T + SR
Sbjct: 445 SFGNSGSRDKAQSRRSKISLKTEKKRSR 468
BLAST of MS006404 vs. TAIR 10
Match:
AT4G24320.1 (Ubiquitin carboxyl-terminal hydrolase family protein )
HSP 1 Score: 297.0 bits (759), Expect = 4.1e-80
Identity = 154/364 (42.31%), Postives = 229/364 (62.91%), Query Frame = 0
Query: 246 RTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVSIITQKREVLRIPT 305
RT+V+ +KWV D LD AV+REKNL V+++KD I S PSKS+P+S ++ + ++ +
Sbjct: 16 RTFVNARVKWVSDHYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSLSLLKPLVNLHI 75
Query: 306 RPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQGENCRQRAADQLVKL 365
+KYPS+F F P HVRLT Q L L EE+ + R +L K
Sbjct: 76 TAAAFFQKYPSVFTTFQPSP-SHPLHVRLTPQALTLHKEEETIHLSPPQRNVTVQRLTKF 135
Query: 366 LMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGSGDTRALELV 425
LM++ +PL ++D+ ++DLGLP+DY+ S++ D+P+YF+V ++ +G T AL +
Sbjct: 136 LMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTEIKDRLTGE-KTLALTIS 195
Query: 426 CWNNELATSVLEKMAAKAETS-VSKGMPISFPMKFSNGFEMDKKFKKWVDEWQKLPYISP 485
N L S +E+ A + S V KG+ I + M F G+E+ K+ K WV++WQ LPYISP
Sbjct: 196 SRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNFPKGYELHKRVKNWVEQWQNLPYISP 255
Query: 486 YENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYFGLRSRFKRALLHHP 545
YENA HL SD+++KWAVA+LHELL +L++KK E + ++ +GEY G RFK+AL+HHP
Sbjct: 256 YENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTETDNVICLGEYLGFGMRFKKALVHHP 315
Query: 546 GIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVKEDSKTTTEQGGTRQ 605
GIFY+S K T TVVL+E Y + ++E PL+ IR++Y++LM+ K G R
Sbjct: 316 GIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRHQYIYLMSKSGRGKKRDYVHGVERS 375
Query: 606 QKKE 609
+K+
Sbjct: 376 NRKK 377
BLAST of MS006404 vs. TAIR 10
Match:
AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )
HSP 1 Score: 231.5 bits (589), Expect = 2.1e-60
Identity = 111/170 (65.29%), Postives = 129/170 (75.88%), Query Frame = 0
Query: 3 FDAVAWNSMIMGVAKCGEIGESRKLFDKMPERNPISWNSMIGGYVRNGMFKEALKLFVKM 62
FD VAWNSMIMG AKCG I +++ LFD+MP+RN +SWNSMI G+VRNG FK+AL +F +M
Sbjct: 190 FDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREM 249
Query: 63 QEEKIKPSEFTMVSLLNASAHIGALRQGEWIHEYIEKNNLELNPIVVTAIIDMYCKCGSI 122
QE+ +KP FTMVSLLNA A++GA QG WIHEYI +N ELN IVVTA+IDMYCKCG I
Sbjct: 250 QEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCI 309
Query: 123 VNALQVFEKMPSRGLSSWNSMIFGLAVNGCENEAILLFRMLESSSLEPDS 173
L VFE P + LS WNSMI GLA NG E A+ LF LE S LEPDS
Sbjct: 310 EEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDS 359
BLAST of MS006404 vs. TAIR 10
Match:
AT5G48040.1 (Ubiquitin carboxyl-terminal hydrolase family protein )
HSP 1 Score: 217.6 bits (553), Expect = 3.1e-56
Identity = 129/345 (37.39%), Postives = 191/345 (55.36%), Query Frame = 0
Query: 249 VDGTIKWVRDRGLDHAVEREKNLLPVMNIKDFIKSEPSKSVPVSIITQKREVLRIP--TR 308
V+ +KWV+DR LD V REK+L V N+ I + P +P+ + R L +P +
Sbjct: 33 VNVKLKWVKDRELDAVVVREKHLRAVCNLVSVISASPDLRLPIFKLLPHRGQLGLPQELK 92
Query: 309 PIHLIRKYPSIFEEFL---PGGIGIQPHVRLTSQVLELDAEE-QLSYQGENCRQRAADQL 368
IR+YP+IF E G + P LT + ++L EE +S E + +L
Sbjct: 93 LSAFIRRYPNIFVEHCYWDSAGTSV-PCFGLTRETIDLYYEEVDVSRVNE---RDVLVRL 152
Query: 369 VKLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGSGDTRAL 428
KLLM++ + L ID L+WDLGLP DY S++ PD F +V S D L
Sbjct: 153 CKLLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLV------KLSSDLDGL 212
Query: 429 ELVCWNNELATSVLEKMAAKAETSVSKGMPISFPMKFSNGFEMDKKFKKWVDEWQKLPYI 488
+L+ W+ LA S ++ V ++FP+KF+ GF + +K +W+ EWQ+LPY
Sbjct: 213 KLIHWDEHLAVSQMQ-----LREDVGNDERMAFPVKFTRGFGLKRKSIEWLQEWQRLPYT 272
Query: 489 SPYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYFGLRSRFKRALLH 548
SPY +ASHL P +D S+K V + HELLH+ I KK E++ + + + F L +F +
Sbjct: 273 SPYVDASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFALPQKFTKVFER 332
Query: 549 HPGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMN 588
HPGIFY+S K T TV+L+E Y R +IE PL+ +R K+ ++MN
Sbjct: 333 HPGIFYISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANMMN 362
BLAST of MS006404 vs. TAIR 10
Match:
AT2G39120.1 (Ubiquitin carboxyl-terminal hydrolase family protein )
HSP 1 Score: 216.1 bits (549), Expect = 9.1e-56
Identity = 131/368 (35.60%), Postives = 203/368 (55.16%), Query Frame = 0
Query: 246 RTYVDGTIKWVRDRGLDHA--VEREKNLLPVMNIKDFIKSEPSKSVPVSIITQKREVLRI 305
RTYVD +KW RD D+ + R L V+++K+ I EP++ +P+S I++K +
Sbjct: 22 RTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDV 81
Query: 306 PTRPIHLIRKYPSIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLSYQGENCRQRAADQLV 365
T+ H +RK+PSIFEEF+ + P RLT + ELD +E++ YQ D+L
Sbjct: 82 STKIAHFLRKFPSIFEEFVGPEYNL-PWFRLTPEATELDRQERVVYQ--TSADDLRDRLK 141
Query: 366 KLLMISRVHKIPLSIIDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGSGDTRALE 425
KL+++S+ + +PLSI+ +KW LGLP DY+Q FPD + F + L
Sbjct: 142 KLILMSKDNVLPLSIVQGMKWYLGLPDDYLQ-----FPD-MNLDSSFRFVDMEDGVKGLA 201
Query: 426 LVCWNNELATSVLEKMAAKAETSVSKGMPISFPMKFSNGFEMDKKFKKWVDEWQKLPYIS 485
+ + SVL+K A K I FP+ S G + K + W+ E+QKLPY+S
Sbjct: 202 VDYNGGDKVLSVLQKNAMKKRRGEVSLEEIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVS 261
Query: 486 PYENASHLSPSSDESDKWAVAILHELLHMLIAKKIEKETILFIGEYFGLRSRFKRALLHH 545
PY++ S L PSSD ++K V LHELL + + E++ +L + ++FGL + +A H
Sbjct: 262 PYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERH 321
Query: 546 PGIFYLSSKNGTYTVVLKEGYKRGSVIENSPLINIRNKYLHLMNTVKEDSKTTTEQGGTR 605
P IFYLS KN T T +L+E Y+ + +E P++ +R KY+ LM + K+ G R
Sbjct: 322 PQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMKNSELILKSRRNSFGFR 380
Query: 606 QQKKEEKE 612
+ +K+
Sbjct: 382 DEGVVDKD 380
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022147962.1 | 3.2e-260 | 98.32 | protein ROOT PRIMORDIUM DEFECTIVE 1 [Momordica charantia] | [more] |
KAG7012049.1 | 6.4e-229 | 59.10 | Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... | [more] |
XP_022952527.1 | 1.4e-202 | 78.88 | protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita moschata] | [more] |
XP_023554109.1 | 8.8e-202 | 76.97 | protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucurbita pepo subsp. pepo] >XP_023554110.1... | [more] |
XP_022969363.1 | 1.3e-200 | 78.67 | protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X4 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Q9SJG6 | 3.0e-59 | 65.29 | Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... | [more] |
Q9ZUZ6 | 1.3e-54 | 35.60 | Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W... | [more] |
Q38959 | 1.7e-38 | 44.64 | Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidop... | [more] |
Q9FG16 | 6.4e-38 | 34.47 | Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX... | [more] |
Q9LSB8 | 4.1e-37 | 44.64 | Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1D3S2 | 1.5e-260 | 98.32 | protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Momordica charantia OX=3673 GN=LOC1110167... | [more] |
A0A6J1GKN4 | 6.5e-203 | 78.88 | protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC11145519... | [more] |
A0A6J1I0R6 | 6.1e-201 | 78.67 | protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X4 OS=Cucurbita maxima OX=3661 GN=LO... | [more] |
A0A6J1HW55 | 1.8e-200 | 78.03 | protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LO... | [more] |
A0A6J1HXK3 | 8.8e-200 | 77.08 | protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LO... | [more] |
Match Name | E-value | Identity | Description | |
AT1G71850.1 | 7.1e-125 | 52.68 | Ubiquitin carboxyl-terminal hydrolase family protein | [more] |
AT4G24320.1 | 4.1e-80 | 42.31 | Ubiquitin carboxyl-terminal hydrolase family protein | [more] |
AT2G42920.1 | 2.1e-60 | 65.29 | Pentatricopeptide repeat (PPR-like) superfamily protein | [more] |
AT5G48040.1 | 3.1e-56 | 37.39 | Ubiquitin carboxyl-terminal hydrolase family protein | [more] |
AT2G39120.1 | 9.1e-56 | 35.60 | Ubiquitin carboxyl-terminal hydrolase family protein | [more] |