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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. GCATCTCGAGAAACTCTGGAGGAGGTGGAACGGATTGTGGAGGTGGAAGATAGCCATAAATCCTTCAAAGATTTGGAGCACCTTTGTGGATTTCCCATACCTTCCAACGATGGATTCCTCGATACCATGCACTTGTATGGTTTATATTTGAAGAAT mRNA sequence GCATCTCGAGAAACTCTGGAGGAGGTGGAACGGATTGTGGAGGTGGAAGATAGCCATAAATCCTTCAAAGATTTGGAGCACCTTTGTGGATTTCCCATACCTTCCAACGATGGATTCCTCGATACCATGCACTTGTATGGTTTATATTTGAAGAAT Coding sequence (CDS) GCATCTCGAGAAACTCTGGAGGAGGTGGAACGGATTGTGGAGGTGGAAGATAGCCATAAATCCTTCAAAGATTTGGAGCACCTTTGTGGATTTCCCATACCTTCCAACGATGGATTCCTCGATACCATGCACTTGTATGGTTTATATTTGAAGAAT Protein sequence ASRETLEEVERIVEVEDSHKSFKDLEHLCGFPIPSNDGFLDTMHLYGLYLKN
Homology
BLAST of MS006378 vs. NCBI nr
Match: KAA0061663.1 (transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa]) HSP 1 Score: 72.4 bits (176), Expect = 1.3e-09 Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0
Query: 1 ASRETLEEVERIVEVEDSHKSFKDLEHLCGFPIPSNDGFLDTMHLYGLYLKN 53
A+R LEE+ER V++EDSHKS KDLE LCG+PIP GF + M YGLYLKN
Sbjct: 145 AARRALEELERSVDIEDSHKSVKDLERLCGWPIPYVGGFKNRMEYYGLYLKN 196
BLAST of MS006378 vs. NCBI nr
Match: KAG6571342.1 (hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 69.3 bits (168), Expect = 1.1e-08 Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 0
Query: 1 ASRETLEEVERIVEVEDSHKSFKDLEHLCGFPIPSNDGFLDTMHLYGLYLKN 53
A+R LEEVER V V+DSH S ++ E LCGFPIP GFL+ MH YGLYLK+
Sbjct: 131 AARRDLEEVERRVVVDDSHASLREYERLCGFPIPYVGGFLNRMHYYGLYLKD 182
BLAST of MS006378 vs. ExPASy TrEMBL
Match: A0A0A0KGL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.3e-10 Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 0
Query: 1 ASRETLEEVERIVEVEDSHKSFKDLEHLCGFPIPSNDGFLDTMHLYGLYLKN 53
A+R+ LE++ER V+VEDSHKS KDLE LCG+PIPS GF + M YGLYLKN
Sbjct: 162 AARQALEDLERSVDVEDSHKSVKDLERLCGWPIPSVGGFKNRMEYYGLYLKN 213
BLAST of MS006378 vs. ExPASy TrEMBL
Match: A0A5D3DC97 (Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00060 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 6.3e-10 Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 0
Query: 1 ASRETLEEVERIVEVEDSHKSFKDLEHLCGFPIPSNDGFLDTMHLYGLYLKN 53
A+R LEE+ER V++EDSHKS KDLE LCG+PIP GF + M YGLYLKN
Sbjct: 145 AARRALEELERSVDIEDSHKSVKDLERLCGWPIPYVGGFKNRMEYYGLYLKN 196
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061663.1 | 1.3e-09 | 65.38 | transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 tran... | [more] |
| KAG6571342.1 | 1.1e-08 | 63.46 | hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KGL2 | 1.3e-10 | 67.31 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1 | [more] |
| A0A5D3DC97 | 6.3e-10 | 65.38 | Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
|---|
| MS006378.1 | MS006378.1 | mRNA |
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