MS006373 (gene) Bitter gourd (TR) v1

Overview
NameMS006373
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold327: 186640 .. 187023 (+)
RNA-Seq ExpressionMS006373
SyntenyMS006373
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGAATCGGCGGGCATGGCAATTTGGAGATTCCTGTGGGCGGCGACGATTTTGGTATTGACATGCTCGGCCACCGTGGGCCGGGCGGATTCCGAGCACTTCGGGATCCACGCGGTGGGGCATGCGGTGGAGCCGTTCTGCCCCGGCGGGTACTCCGACAGAGGGGACCACTGCAACCACATAGACCACGTGGCCTTCTTCAACGACGACTTCGACGACACCTTCAAACCCGCCGCCACCGCCGTCGACAGACTGTCGATGTCGATGTCGCTGTCGCAGTCGGAGTCCACGGTGGCGGCGGAGGCCGATGCCGTCACTATGGGAATGCAGAATAATCTCACTCCCGAAGAACCCATTTCCAGTAAAGTCACAATCTTAGGCCAT

mRNA sequence

ATCGAATCGGCGGGCATGGCAATTTGGAGATTCCTGTGGGCGGCGACGATTTTGGTATTGACATGCTCGGCCACCGTGGGCCGGGCGGATTCCGAGCACTTCGGGATCCACGCGGTGGGGCATGCGGTGGAGCCGTTCTGCCCCGGCGGGTACTCCGACAGAGGGGACCACTGCAACCACATAGACCACGTGGCCTTCTTCAACGACGACTTCGACGACACCTTCAAACCCGCCGCCACCGCCGTCGACAGACTGTCGATGTCGATGTCGCTGTCGCAGTCGGAGTCCACGGTGGCGGCGGAGGCCGATGCCGTCACTATGGGAATGCAGAATAATCTCACTCCCGAAGAACCCATTTCCAGTAAAGTCACAATCTTAGGCCAT

Coding sequence (CDS)

ATCGAATCGGCGGGCATGGCAATTTGGAGATTCCTGTGGGCGGCGACGATTTTGGTATTGACATGCTCGGCCACCGTGGGCCGGGCGGATTCCGAGCACTTCGGGATCCACGCGGTGGGGCATGCGGTGGAGCCGTTCTGCCCCGGCGGGTACTCCGACAGAGGGGACCACTGCAACCACATAGACCACGTGGCCTTCTTCAACGACGACTTCGACGACACCTTCAAACCCGCCGCCACCGCCGTCGACAGACTGTCGATGTCGATGTCGCTGTCGCAGTCGGAGTCCACGGTGGCGGCGGAGGCCGATGCCGTCACTATGGGAATGCAGAATAATCTCACTCCCGAAGAACCCATTTCCAGTAAAGTCACAATCTTAGGCCAT

Protein sequence

IESAGMAIWRFLWAATILVLTCSATVGRADSEHFGIHAVGHAVEPFCPGGYSDRGDHCNHIDHVAFFNDDFDDTFKPAATAVDRLSMSMSLSQSESTVAAEADAVTMGMQNNLTPEEPISSKVTILGH
Homology
BLAST of MS006373 vs. NCBI nr
Match: KAG6572424.1 (hypothetical protein SDJN03_29152, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-22
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 0

Query: 26  VGRADSEHFGIHAVGHAVEPFCPGGYSDRGDHCNHIDHVAFFN-------DDFDDTFKPA 85
           +  AD  HFGIHA+GHAVEPFCPGGYSDRGDHCNHI  +   N       DDFDDT+K  
Sbjct: 15  LAHADPHHFGIHAIGHAVEPFCPGGYSDRGDHCNHIGRITSVNYGEDDDDDDFDDTYK-- 74

Query: 86  ATAVDRLSMSMSLSQSESTVAAEADAVTMGMQNNLTPEEPISSKVTILGH 129
              + +LSM+MS+  SEST  AE +AV + ++ +++PEE +S KVT+LGH
Sbjct: 75  --VLGKLSMAMSV--SESTDDAEKEAVGLELE-DISPEEQLSDKVTVLGH 117

BLAST of MS006373 vs. NCBI nr
Match: KAA0061659.1 (hypothetical protein E6C27_scaffold212G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 5.4e-17
Identity = 55/123 (44.72%), Postives = 75/123 (60.98%), Query Frame = 0

Query: 11  FLWAATILVLTCSATVGRADSEHFGIHAVGHAVEPFCPGGYSDRGDHCNHIDHVAFFN-- 70
           F+    ILV    + V  ADS+HFGIHAVGHAVEPFCPGGYSDRGDHC H+  ++  N  
Sbjct: 9   FVCVIAILV----SKVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRISSVNYN 68

Query: 71  ---DDFDDTFKPAATAVDRLSMSMSLSQSESTVAAEADAVTMGMQNNLTPEEPISSKVTI 129
              DD DD F      V +LS+S+S    +     +AD + +G    ++P++ +S+ V +
Sbjct: 69  ENDDDDDDEFDDRYKVVGKLSVSVSPDAED-----QADGLELG---TISPDQQLSNNVIV 119

BLAST of MS006373 vs. NCBI nr
Match: KAE8647343.1 (hypothetical protein Csa_003811 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 3.3e-14
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = 0

Query: 13 WAATILVLTCSATVGRADSEHFGIHAVGHAVEPFCPGGYSDRGDHCNHIDHVAFFN---- 72
          +   I +L C   V  AD++HFGIHAVGHAVEPFCPGGYSDRGDHC H+  ++  N    
Sbjct: 12 FVCVIAILICK--VADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRISSVNYNEN 71

Query: 73 ---DDFDDTFKPAATAVDRLSMSMSLSQSE 96
             D+FDDT+K     V +LS S+S   +E
Sbjct: 72 DDDDEFDDTYK----VVGKLSASLSPEAAE 95

BLAST of MS006373 vs. ExPASy TrEMBL
Match: A0A5A7V7L4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00280 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-17
Identity = 55/123 (44.72%), Postives = 75/123 (60.98%), Query Frame = 0

Query: 11  FLWAATILVLTCSATVGRADSEHFGIHAVGHAVEPFCPGGYSDRGDHCNHIDHVAFFN-- 70
           F+    ILV    + V  ADS+HFGIHAVGHAVEPFCPGGYSDRGDHC H+  ++  N  
Sbjct: 9   FVCVIAILV----SKVADADSDHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRISSVNYN 68

Query: 71  ---DDFDDTFKPAATAVDRLSMSMSLSQSESTVAAEADAVTMGMQNNLTPEEPISSKVTI 129
              DD DD F      V +LS+S+S    +     +AD + +G    ++P++ +S+ V +
Sbjct: 69  ENDDDDDDEFDDRYKVVGKLSVSVSPDAED-----QADGLELG---TISPDQQLSNNVIV 119

BLAST of MS006373 vs. ExPASy TrEMBL
Match: A0A0A0KE60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421690 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.5e-17
Identity = 55/123 (44.72%), Postives = 74/123 (60.16%), Query Frame = 0

Query: 13  WAATILVLTCSATVGRADSEHFGIHAVGHAVEPFCPGGYSDRGDHCNHIDHVAFFN---- 72
           +   I +L C   V  AD++HFGIHAVGHAVEPFCPGGYSDRGDHC H+  ++  N    
Sbjct: 12  FVCVIAILICK--VADADADHFGIHAVGHAVEPFCPGGYSDRGDHCQHLGRISSVNYNEN 71

Query: 73  ---DDFDDTFKPAATAVDRLSMSMSLSQSESTVAAEADAVTMGMQNNLTPEEPISSKVTI 129
              D+FDDT+K     V +LS S+S   +E      AD + +G+    +P + +S K  +
Sbjct: 72  DDDDEFDDTYK----VVGKLSASLSPEAAED----RADGLELGI---FSPHDRLSVKEIV 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6572424.14.3e-2255.45hypothetical protein SDJN03_29152, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0061659.15.4e-1744.72hypothetical protein E6C27_scaffold212G00280 [Cucumis melo var. makuwa][more]
KAE8647343.13.3e-1451.11hypothetical protein Csa_003811 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V7L42.6e-1744.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KE604.5e-1744.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421690 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006373.1MS006373.1mRNA