MS006370 (gene) Bitter gourd (TR) v1

Overview


Name	MS006370
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	ethylene-responsive transcription factor 3-like
Location	scaffold327: 171998 .. 172633 (+)
RNA-Seq Expression	MS006370
Synteny	MS006370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCGGGGCAGGGCCACAGATCCACCGACGGCTGGGCAGACGACTCATGAACCAGTTAAAGAAGTGCGATTCAGAGGCGTTCGGAAGCGGCCATGGGGCCGGTACGCCGCCGAGATTAGAGATCCCTGGAAGAAGACTCGCGTCTGGCTCGGCACCTTCGATACGGCGGAGGATGCCGCCCGAGCTTACGACGCCGCCGCTCTCTCTCTCCGCGGCCCGAAGGCTAAAACGAACTTCCCTCTGCATCCATCGGCGATCTCTGTTCATCACCAAATCCCATTCTCGCAGGAGTTTCACGACTCCGGCGGATTCTGCAAGATTAGCAACATTTCGGTCAATAGACCTACATCGAGCAGTTTGAGTTCCACCGTGGAGTCTTTCAGCGGGCCTAGGGTTTCCATTCCGGCTCCGTCCGTTCCAAAGCTCCATCGGAAGTCCCTGCCGCCGGTCTCCCCCGACGATTGCCACAGCGACTGTGATTCATCGTCCTCGGTTGTTGATGACAGTGAGGAATATGCACGAACCTCTTCAATCCGCAGAGTGTTGCCGTTCGATCTGAACCTACCTCCTCCACTGCCGCCGCACGACGTCGATTTATCCGGTGATGATCTTCAAGCCACTGCTCTGTGTTTC

mRNA sequence

ATGCGGCGGGGCAGGGCCACAGATCCACCGACGGCTGGGCAGACGACTCATGAACCAGTTAAAGAAGTGCGATTCAGAGGCGTTCGGAAGCGGCCATGGGGCCGGTACGCCGCCGAGATTAGAGATCCCTGGAAGAAGACTCGCGTCTGGCTCGGCACCTTCGATACGGCGGAGGATGCCGCCCGAGCTTACGACGCCGCCGCTCTCTCTCTCCGCGGCCCGAAGGCTAAAACGAACTTCCCTCTGCATCCATCGGCGATCTCTGTTCATCACCAAATCCCATTCTCGCAGGAGTTTCACGACTCCGGCGGATTCTGCAAGATTAGCAACATTTCGGTCAATAGACCTACATCGAGCAGTTTGAGTTCCACCGTGGAGTCTTTCAGCGGGCCTAGGGTTTCCATTCCGGCTCCGTCCGTTCCAAAGCTCCATCGGAAGTCCCTGCCGCCGGTCTCCCCCGACGATTGCCACAGCGACTGTGATTCATCGTCCTCGGTTGTTGATGACAGTGAGGAATATGCACGAACCTCTTCAATCCGCAGAGTGTTGCCGTTCGATCTGAACCTACCTCCTCCACTGCCGCCGCACGACGTCGATTTATCCGGTGATGATCTTCAAGCCACTGCTCTGTGTTTC

Coding sequence (CDS)

ATGCGGCGGGGCAGGGCCACAGATCCACCGACGGCTGGGCAGACGACTCATGAACCAGTTAAAGAAGTGCGATTCAGAGGCGTTCGGAAGCGGCCATGGGGCCGGTACGCCGCCGAGATTAGAGATCCCTGGAAGAAGACTCGCGTCTGGCTCGGCACCTTCGATACGGCGGAGGATGCCGCCCGAGCTTACGACGCCGCCGCTCTCTCTCTCCGCGGCCCGAAGGCTAAAACGAACTTCCCTCTGCATCCATCGGCGATCTCTGTTCATCACCAAATCCCATTCTCGCAGGAGTTTCACGACTCCGGCGGATTCTGCAAGATTAGCAACATTTCGGTCAATAGACCTACATCGAGCAGTTTGAGTTCCACCGTGGAGTCTTTCAGCGGGCCTAGGGTTTCCATTCCGGCTCCGTCCGTTCCAAAGCTCCATCGGAAGTCCCTGCCGCCGGTCTCCCCCGACGATTGCCACAGCGACTGTGATTCATCGTCCTCGGTTGTTGATGACAGTGAGGAATATGCACGAACCTCTTCAATCCGCAGAGTGTTGCCGTTCGATCTGAACCTACCTCCTCCACTGCCGCCGCACGACGTCGATTTATCCGGTGATGATCTTCAAGCCACTGCTCTGTGTTTC

Protein sequence

MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISNISVNRPTSSSLSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSIRRVLPFDLNLPPPLPPHDVDLSGDDLQATALCF

Homology

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BLAST of MS006370 vs. NCBI nr
Match: XP_038888524.1 (ethylene-responsive transcription factor 3-like [Benincasa hispida])

HSP 1 Score: 392.1 bits (1006), Expect = 3.0e-105
Identity = 197/213 (92.49%), Postives = 198/213 (92.96%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60
           MRRGRATDP TA +T  EPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA
Sbjct: 1   MRRGRATDPLTAAETVREPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60

Query: 61  ARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISNISVNRPTSSS 120
           ARAYD AALSLRGPKAKTNFPLHPS ISVH QIPFSQEFHDSGGFCKISNI VNRPTSSS
Sbjct: 61  ARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQEFHDSGGFCKISNIPVNRPTSSS 120

Query: 121 LSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSIR 180
           LSSTVESFSGPRVSIP PSVPKL RKSLP VSPDDCHSDCDSSSSVVDDSEEYA TSSIR
Sbjct: 121 LSSTVESFSGPRVSIPVPSVPKLRRKSLPQVSPDDCHSDCDSSSSVVDDSEEYAHTSSIR 180

Query: 181 RVLPFDLNLPPPL-PPHDVDLSGDDLQATALCF 213
           RVLPFDLNLPPPL PPHDVDLSGDDL ATAL F
Sbjct: 181 RVLPFDLNLPPPLPPPHDVDLSGDDLHATALYF 213

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BLAST of MS006370 vs. NCBI nr
Match: XP_008449487.1 (PREDICTED: ethylene-responsive transcription factor 3-like [Cucumis melo] >KAA0061657.1 ethylene-responsive transcription factor 3-like [Cucumis melo var. makuwa] >TYK05849.1 ethylene-responsive transcription factor 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 380.9 bits (977), Expect = 6.9e-102
Identity = 191/214 (89.25%), Postives = 199/214 (92.99%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60
           MRRGRATDP TA ++  EPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA
Sbjct: 1   MRRGRATDPLTAPESVQEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60

Query: 61  ARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISN-ISVNRPTSS 120
           ARAYD AALSLRGPKAKTNFPLHPS ISVH QIPFSQ+FHDSGGFC+ISN I VNRPTSS
Sbjct: 61  ARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQQFHDSGGFCEISNIIPVNRPTSS 120

Query: 121 SLSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSI 180
           SLSSTVESFSGPR+SIP PSVPKL RKS P V+PDDCHSDCDSSSSVVDDSEEYA++SSI
Sbjct: 121 SLSSTVESFSGPRLSIPVPSVPKLRRKSQPQVAPDDCHSDCDSSSSVVDDSEEYAQSSSI 180

Query: 181 RRVLPFDLNLPPPL-PPHDVDLSGDDLQATALCF 213
           RRVLPFDLNLPPPL PPHDVDLSGDDL ATALCF
Sbjct: 181 RRVLPFDLNLPPPLPPPHDVDLSGDDLHATALCF 214

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BLAST of MS006370 vs. NCBI nr
Match: XP_004140127.1 (ethylene-responsive transcription factor 3 [Cucumis sativus] >KGN47972.1 hypothetical protein Csa_003549 [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 1.0e-100
Identity = 190/214 (88.79%), Postives = 198/214 (92.52%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60
           MRRGRATDP T  ++  +PVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA
Sbjct: 1   MRRGRATDPLTVPESVQKPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60

Query: 61  ARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISN-ISVNRPTSS 120
           ARAYD AALSLRGPKAKTNFPLHPS ISVH QIPFSQ+FHDSGGFC+ISN I VNRPTSS
Sbjct: 61  ARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQQFHDSGGFCEISNIIPVNRPTSS 120

Query: 121 SLSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSI 180
           SLSSTVESFSGPR+SIPAPSVPKL RKSLP V+PDDCHSDCDSSSSVVDDSEEYA +SSI
Sbjct: 121 SLSSTVESFSGPRLSIPAPSVPKLRRKSLPQVAPDDCHSDCDSSSSVVDDSEEYAHSSSI 180

Query: 181 RRVLPFDLNLPPPL-PPHDVDLSGDDLQATALCF 213
           RRVLPFDLNLPPPL PPHDVDLSGDDL ATAL F
Sbjct: 181 RRVLPFDLNLPPPLPPPHDVDLSGDDLHATALYF 214

[Close]

BLAST of MS006370 vs. NCBI nr
Match: XP_023511720.1 (ethylene-responsive transcription factor 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 2.2e-100
Identity = 189/213 (88.73%), Postives = 194/213 (91.08%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60
           MRRGR  DP  A +T  EP KEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA
Sbjct: 1   MRRGRDMDPLMAAETVQEPDKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60

Query: 61  ARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISNISVNRPTSSS 120
           ARAYD AALSLRGPKAKTNFPLHPS ISVH +IPFSQEFHDS G CKIS+I VNRPTSSS
Sbjct: 61  ARAYDEAALSLRGPKAKTNFPLHPSTISVHQKIPFSQEFHDSAGLCKISDIPVNRPTSSS 120

Query: 121 LSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSIR 180
           LSSTVESFSGPRVSIPAPSVPK+ R+SLP VSPDDCHSDCDSSSSVVDDSEEYA TSSIR
Sbjct: 121 LSSTVESFSGPRVSIPAPSVPKICRQSLPLVSPDDCHSDCDSSSSVVDDSEEYAHTSSIR 180

Query: 181 RVLPFDLNLPPPLPP-HDVDLSGDDLQATALCF 213
           RVLPFDLNLPPPLPP HDVDLSGDDL ATALCF
Sbjct: 181 RVLPFDLNLPPPLPPLHDVDLSGDDLHATALCF 213

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BLAST of MS006370 vs. NCBI nr
Match: XP_022953046.1 (ethylene-responsive transcription factor 3-like [Cucurbita moschata])

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99
Identity = 188/213 (88.26%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60
           MRRGR  DP  A +T  EP KEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA
Sbjct: 1   MRRGRDMDPLMAAETVQEPDKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60

Query: 61  ARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISNISVNRPTSSS 120
           ARAYD AALSLRGPKAKTNFPLHPS ISVH +IPFSQEFHDS G CKIS+I VNRPTSSS
Sbjct: 61  ARAYDEAALSLRGPKAKTNFPLHPSTISVHQKIPFSQEFHDSAGLCKISDIPVNRPTSSS 120

Query: 121 LSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSIR 180
           LSSTVESFSGPRVSIPAP VPK+ R+SLP VSPDDCHSDCDSSSSVVDDSEEYA TSSIR
Sbjct: 121 LSSTVESFSGPRVSIPAPLVPKICRQSLPLVSPDDCHSDCDSSSSVVDDSEEYAHTSSIR 180

Query: 181 RVLPFDLNLPPPLPP-HDVDLSGDDLQATALCF 213
           RVLPFDLNLPPPLPP HDVDLSGDDL ATALCF
Sbjct: 181 RVLPFDLNLPPPLPPLHDVDLSGDDLHATALCF 213

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BLAST of MS006370 vs. ExPASy Swiss-Prot
Match: Q9SXS8 (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.3e-55
Identity = 135/235 (57.45%), Postives = 154/235 (65.53%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEP-----VKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFD 60
           MRRGRA   P     T EP      KE+RFRGVRKRPWGR+AAEIRDPWKKTRVWLGTFD
Sbjct: 1   MRRGRAAAAP--APVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFD 60

Query: 61  TAEDAARAYDAAALSLRGPKAKTNFPLHPSAISVHHQI-----PFSQEFHDSGGFCKISN 120
           +AEDAARAYDAAA +LRGPKAKTNFPL     + HHQ      P +  F DS  + + + 
Sbjct: 61  SAEDAARAYDAAARALRGPKAKTNFPL---PYAHHHQFNQGHNPNNDPFVDSRFYPQDNP 120

Query: 121 ISVNRPTSSSLSSTVESFSGPRVSIPAP-----SVPKLHRKSLPPVSPDDCHSDCDSSSS 180
           I   RPTSSS+SSTVESFSGPR   PAP     +  + + +S PPV PDDCHSDCDSSSS
Sbjct: 121 IISQRPTSSSMSSTVESFSGPRPP-PAPRQQTTASSRKYTRS-PPVVPDDCHSDCDSSSS 180

Query: 181 VV---------DDSEEYARTSSIRRVLPFDLNLPPPLPPHDVDLSGDDLQATALC 212
           VV         D+  +   +SS R+ L FDLNLPPP+     D   DDL  TALC
Sbjct: 181 VVDHGDCEKENDNDNDNIASSSFRKPLLFDLNLPPPMD----DAGADDLHCTALC 224

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BLAST of MS006370 vs. ExPASy Swiss-Prot
Match: O80339 (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ERF3 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.8e-50
Identity = 126/227 (55.51%), Postives = 149/227 (65.64%), Query Frame = 0


Query: 1   MRRGR---ATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTA 60
           MRRGR   A   PT     +  VKE+RFRGVRKRPWGR+AAEIRDPWKK RVWLGTFD+A
Sbjct: 1   MRRGRGSSAVAGPTVVAAINGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSA 60

Query: 61  EDAARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQ----------EFHDSGGFCK 120
           E+AARAYD+AA +LRGPKAKTNFP+  S+      + F+Q           F D   F  
Sbjct: 61  EEAARAYDSAARNLRGPKAKTNFPIDSSS-PPPPNLRFNQIRNQNQNQVDPFMDHRLFTD 120

Query: 121 ISN--ISVNRPTSSSLSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSS 180
                  VNRPTSSS+SSTVESFSGPR +   P+  K + ++ PPV P+DCHSDCDSSSS
Sbjct: 121 HQQQFPIVNRPTSSSMSSTVESFSGPRPTTMKPATTKRYPRT-PPVVPEDCHSDCDSSSS 180

Query: 181 VVDDSEEYARTSSIRRVLP--FDLNLPPPLPPHDVDLSGDDLQATAL 211
           V+DD ++ A +SS RR  P  FDLN  PPL   D+    DDL  T L
Sbjct: 181 VIDDDDDIA-SSSRRRNPPFQFDLNF-PPLDCVDLFNGADDLHCTDL 223

[Close]

BLAST of MS006370 vs. ExPASy Swiss-Prot
Match: Q9LDE4 (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=ERF7 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.2e-43
Identity = 121/243 (49.79%), Postives = 147/243 (60.49%), Query Frame = 0


Query: 1   MRRGRATD--PPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAE 60
           MR+GR +    P    T    VKE R+RGVRKRPWGR+AAEIRDP KK+RVWLGTFD+A 
Sbjct: 1   MRKGRGSSVVGPALPVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAV 60

Query: 61  DAARAYDAAALSLRGPKAKTNFPLHPSAIS------------------VHHQI-PF-SQE 120
           DAARAYD AA +LRGPKAKTNFP+  S  S                  + +QI PF    
Sbjct: 61  DAARAYDTAARNLRGPKAKTNFPIDCSPSSPLQPLTYLHNQNLCSPPVIQNQIDPFMDHR 120

Query: 121 FHDSGGFCKISNIS-VNRPTSSSLSSTVESFSGPR---VSIPAPSVPK-LHR----KSLP 180
            +  G F +      ++RP SSS+SSTV+S SGPR    +  + SV K LH        P
Sbjct: 121 LYGGGNFQEQQQQQIISRPASSSMSSTVKSCSGPRPMEAAAASSSVAKPLHAIKRYPRTP 180

Query: 181 PVSPDDCHSDCDSSSSVVDDSEEYARTSSIRRV-LPFDLNLPPPLPPHDVDLSG-DDLQA 211
           PV+P+DCHSDCDSSSSV+DD ++ A +SS R+    FDLN  PPL   D+   G DDL  
Sbjct: 181 PVAPEDCHSDCDSSSSVIDDGDDIASSSSRRKTPFQFDLNF-PPLDGVDLFAGGIDDLHC 240

[Close]

BLAST of MS006370 vs. ExPASy Swiss-Prot
Match: Q9C5I3 (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=ERF11 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-25
Identity = 87/188 (46.28%), Postives = 105/188 (55.85%), Query Frame = 0


Query: 11  TAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDAAALS 70
           TA   T+E    VR+RGVRKRPWGRYAAEIRDP+KK+RVWLGTFDT E+AARAYD  A+ 
Sbjct: 7   TAAVKTNEG-NGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIE 66

Query: 71  LRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISNISVNRPTSSSLSSTVESFSG 130
            RG KAKTNFP +                        I+   ++   S S SSTVES S 
Sbjct: 67  FRGAKAKTNFPCY-----------------------NINAHCLSLTQSLSQSSTVES-SF 126

Query: 131 PRVSIPAPSV------PKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSIRRVLP 190
           P +++ + SV      PK+  K+   V   D  S+ DSSS V+D      R    R VL 
Sbjct: 127 PNLNLGSDSVSSRFPFPKIQVKAGMMVF--DERSESDSSSVVMD----VVRYEGRRVVLD 163

Query: 191 FDLNLPPP 193
            DLN PPP
Sbjct: 187 LDLNFPPP 163

[Close]

BLAST of MS006370 vs. ExPASy Swiss-Prot
Match: O80340 (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=ERF4 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.9e-25
Identity = 88/219 (40.18%), Postives = 106/219 (48.40%), Query Frame = 0


Query: 2   RRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAA 61
           + G   DP T  Q TH   KE+R+RGVRKRPWGRYAAEIRDP KKTRVWLGTFDTAE+AA
Sbjct: 3   KMGLKPDPATTNQ-THNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAA 62

Query: 62  RAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKIS--NISVNRPTSS 121
           RAYD AA   RG KAKTNFP             F++    S      S   + V   T+ 
Sbjct: 63  RAYDTAARDFRGAKAKTNFPTFLELSDQKVPTGFARSPSQSSTLDCASPPTLVVPSATAG 122

Query: 122 SLSSTVE--------------SFSGPRVSIPAPSVPKLHRKSLPPVSPD----------- 181
           ++   +E                S P   +    +  + R   PPV+             
Sbjct: 123 NVPPQLELSLGGGGGGSCYQIPMSRPVYFLDLMGIGNVGRGQPPPVTSAFRSPVVHVATK 182

Query: 182 -DCHSDCDSSSSVVDDSEEYARTSSIRRVLPFDLNLPPP 193
             C +  DS SS V D E      S  ++L  DLNLPPP
Sbjct: 183 MACGAQSDSDSSSVVDFEGGMEKRS--QLLDLDLNLPPP 218

[Close]

BLAST of MS006370 vs. ExPASy TrEMBL
Match: A0A5D3C642 (Ethylene-responsive transcription factor 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00030 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.4e-102
Identity = 191/214 (89.25%), Postives = 199/214 (92.99%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60
           MRRGRATDP TA ++  EPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA
Sbjct: 1   MRRGRATDPLTAPESVQEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60

Query: 61  ARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISN-ISVNRPTSS 120
           ARAYD AALSLRGPKAKTNFPLHPS ISVH QIPFSQ+FHDSGGFC+ISN I VNRPTSS
Sbjct: 61  ARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQQFHDSGGFCEISNIIPVNRPTSS 120

Query: 121 SLSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSI 180
           SLSSTVESFSGPR+SIP PSVPKL RKS P V+PDDCHSDCDSSSSVVDDSEEYA++SSI
Sbjct: 121 SLSSTVESFSGPRLSIPVPSVPKLRRKSQPQVAPDDCHSDCDSSSSVVDDSEEYAQSSSI 180

Query: 181 RRVLPFDLNLPPPL-PPHDVDLSGDDLQATALCF 213
           RRVLPFDLNLPPPL PPHDVDLSGDDL ATALCF
Sbjct: 181 RRVLPFDLNLPPPLPPPHDVDLSGDDLHATALCF 214

[Close]

BLAST of MS006370 vs. ExPASy TrEMBL
Match: A0A1S3BLI0 (ethylene-responsive transcription factor 3-like OS=Cucumis melo OX=3656 GN=LOC103491361 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.4e-102
Identity = 191/214 (89.25%), Postives = 199/214 (92.99%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60
           MRRGRATDP TA ++  EPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA
Sbjct: 1   MRRGRATDPLTAPESVQEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60

Query: 61  ARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISN-ISVNRPTSS 120
           ARAYD AALSLRGPKAKTNFPLHPS ISVH QIPFSQ+FHDSGGFC+ISN I VNRPTSS
Sbjct: 61  ARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQQFHDSGGFCEISNIIPVNRPTSS 120

Query: 121 SLSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSI 180
           SLSSTVESFSGPR+SIP PSVPKL RKS P V+PDDCHSDCDSSSSVVDDSEEYA++SSI
Sbjct: 121 SLSSTVESFSGPRLSIPVPSVPKLRRKSQPQVAPDDCHSDCDSSSSVVDDSEEYAQSSSI 180

Query: 181 RRVLPFDLNLPPPL-PPHDVDLSGDDLQATALCF 213
           RRVLPFDLNLPPPL PPHDVDLSGDDL ATALCF
Sbjct: 181 RRVLPFDLNLPPPLPPPHDVDLSGDDLHATALCF 214

[Close]

BLAST of MS006370 vs. ExPASy TrEMBL
Match: A0A0A0KHW7 (AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421660 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.8e-101
Identity = 190/214 (88.79%), Postives = 198/214 (92.52%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60
           MRRGRATDP T  ++  +PVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA
Sbjct: 1   MRRGRATDPLTVPESVQKPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60

Query: 61  ARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISN-ISVNRPTSS 120
           ARAYD AALSLRGPKAKTNFPLHPS ISVH QIPFSQ+FHDSGGFC+ISN I VNRPTSS
Sbjct: 61  ARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQQFHDSGGFCEISNIIPVNRPTSS 120

Query: 121 SLSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSI 180
           SLSSTVESFSGPR+SIPAPSVPKL RKSLP V+PDDCHSDCDSSSSVVDDSEEYA +SSI
Sbjct: 121 SLSSTVESFSGPRLSIPAPSVPKLRRKSLPQVAPDDCHSDCDSSSSVVDDSEEYAHSSSI 180

Query: 181 RRVLPFDLNLPPPL-PPHDVDLSGDDLQATALCF 213
           RRVLPFDLNLPPPL PPHDVDLSGDDL ATAL F
Sbjct: 181 RRVLPFDLNLPPPLPPPHDVDLSGDDLHATALYF 214

[Close]

BLAST of MS006370 vs. ExPASy TrEMBL
Match: A0A6J1GLX1 (ethylene-responsive transcription factor 3-like OS=Cucurbita moschata OX=3662 GN=LOC111455566 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.4e-100
Identity = 188/213 (88.26%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60
           MRRGR  DP  A +T  EP KEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA
Sbjct: 1   MRRGRDMDPLMAAETVQEPDKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60

Query: 61  ARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISNISVNRPTSSS 120
           ARAYD AALSLRGPKAKTNFPLHPS ISVH +IPFSQEFHDS G CKIS+I VNRPTSSS
Sbjct: 61  ARAYDEAALSLRGPKAKTNFPLHPSTISVHQKIPFSQEFHDSAGLCKISDIPVNRPTSSS 120

Query: 121 LSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSIR 180
           LSSTVESFSGPRVSIPAP VPK+ R+SLP VSPDDCHSDCDSSSSVVDDSEEYA TSSIR
Sbjct: 121 LSSTVESFSGPRVSIPAPLVPKICRQSLPLVSPDDCHSDCDSSSSVVDDSEEYAHTSSIR 180

Query: 181 RVLPFDLNLPPPLPP-HDVDLSGDDLQATALCF 213
           RVLPFDLNLPPPLPP HDVDLSGDDL ATALCF
Sbjct: 181 RVLPFDLNLPPPLPPLHDVDLSGDDLHATALCF 213

[Close]

BLAST of MS006370 vs. ExPASy TrEMBL
Match: A0A6J1JLV3 (ethylene-responsive transcription factor 3-like OS=Cucurbita maxima OX=3661 GN=LOC111486384 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 3.5e-99
Identity = 186/213 (87.32%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MRRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60
           MRRGRATDP    QT HEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA
Sbjct: 1   MRRGRATDPLAVAQTVHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDA 60

Query: 61  ARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISNISVNRPTSSS 120
           ARAYDAAA SLRGPKAKTNFPLHPSAISVH QI FSQE HDS GFCKISN  V RPTSSS
Sbjct: 61  ARAYDAAAFSLRGPKAKTNFPLHPSAISVHQQIHFSQEPHDSRGFCKISNSPVKRPTSSS 120

Query: 121 LSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSIR 180
           LSSTVESFSGPRVSIPA SVPKL RKSLPPVSPDDCHSDCDSSSSVV+DSEEYA+T SI 
Sbjct: 121 LSSTVESFSGPRVSIPATSVPKLRRKSLPPVSPDDCHSDCDSSSSVVEDSEEYAQTPSIH 180

Query: 181 RVLPFDLNLPPPLPP-HDVDLSGDDLQATALCF 213
           +VLPFDLNLPPPLP   D+D+SGDDLQ T LCF
Sbjct: 181 KVLPFDLNLPPPLPSLQDIDISGDDLQVTTLCF 213

[Close]

BLAST of MS006370 vs. TAIR 10
Match: AT1G50640.1 (ethylene responsive element binding factor 3 )

HSP 1 Score: 199.5 bits (506), Expect = 2.7e-51
Identity = 126/227 (55.51%), Postives = 149/227 (65.64%), Query Frame = 0


Query: 1   MRRGR---ATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTA 60
           MRRGR   A   PT     +  VKE+RFRGVRKRPWGR+AAEIRDPWKK RVWLGTFD+A
Sbjct: 1   MRRGRGSSAVAGPTVVAAINGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSA 60

Query: 61  EDAARAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQ----------EFHDSGGFCK 120
           E+AARAYD+AA +LRGPKAKTNFP+  S+      + F+Q           F D   F  
Sbjct: 61  EEAARAYDSAARNLRGPKAKTNFPIDSSS-PPPPNLRFNQIRNQNQNQVDPFMDHRLFTD 120

Query: 121 ISN--ISVNRPTSSSLSSTVESFSGPRVSIPAPSVPKLHRKSLPPVSPDDCHSDCDSSSS 180
                  VNRPTSSS+SSTVESFSGPR +   P+  K + ++ PPV P+DCHSDCDSSSS
Sbjct: 121 HQQQFPIVNRPTSSSMSSTVESFSGPRPTTMKPATTKRYPRT-PPVVPEDCHSDCDSSSS 180

Query: 181 VVDDSEEYARTSSIRRVLP--FDLNLPPPLPPHDVDLSGDDLQATAL 211
           V+DD ++ A +SS RR  P  FDLN  PPL   D+    DDL  T L
Sbjct: 181 VIDDDDDIA-SSSRRRNPPFQFDLNF-PPLDCVDLFNGADDLHCTDL 223

[Close]

BLAST of MS006370 vs. TAIR 10
Match: AT3G20310.1 (ethylene response factor 7 )

HSP 1 Score: 177.9 bits (450), Expect = 8.3e-45
Identity = 121/243 (49.79%), Postives = 147/243 (60.49%), Query Frame = 0


Query: 1   MRRGRATD--PPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAE 60
           MR+GR +    P    T    VKE R+RGVRKRPWGR+AAEIRDP KK+RVWLGTFD+A 
Sbjct: 1   MRKGRGSSVVGPALPVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAV 60

Query: 61  DAARAYDAAALSLRGPKAKTNFPLHPSAIS------------------VHHQI-PF-SQE 120
           DAARAYD AA +LRGPKAKTNFP+  S  S                  + +QI PF    
Sbjct: 61  DAARAYDTAARNLRGPKAKTNFPIDCSPSSPLQPLTYLHNQNLCSPPVIQNQIDPFMDHR 120

Query: 121 FHDSGGFCKISNIS-VNRPTSSSLSSTVESFSGPR---VSIPAPSVPK-LHR----KSLP 180
            +  G F +      ++RP SSS+SSTV+S SGPR    +  + SV K LH        P
Sbjct: 121 LYGGGNFQEQQQQQIISRPASSSMSSTVKSCSGPRPMEAAAASSSVAKPLHAIKRYPRTP 180

Query: 181 PVSPDDCHSDCDSSSSVVDDSEEYARTSSIRRV-LPFDLNLPPPLPPHDVDLSG-DDLQA 211
           PV+P+DCHSDCDSSSSV+DD ++ A +SS R+    FDLN  PPL   D+   G DDL  
Sbjct: 181 PVAPEDCHSDCDSSSSVIDDGDDIASSSSRRKTPFQFDLNF-PPLDGVDLFAGGIDDLHC 240

[Close]

BLAST of MS006370 vs. TAIR 10
Match: AT1G28370.1 (ERF domain protein 11 )

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-26
Identity = 87/188 (46.28%), Postives = 105/188 (55.85%), Query Frame = 0


Query: 11  TAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDAAALS 70
           TA   T+E    VR+RGVRKRPWGRYAAEIRDP+KK+RVWLGTFDT E+AARAYD  A+ 
Sbjct: 7   TAAVKTNEG-NGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIE 66

Query: 71  LRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKISNISVNRPTSSSLSSTVESFSG 130
            RG KAKTNFP +                        I+   ++   S S SSTVES S 
Sbjct: 67  FRGAKAKTNFPCY-----------------------NINAHCLSLTQSLSQSSTVES-SF 126

Query: 131 PRVSIPAPSV------PKLHRKSLPPVSPDDCHSDCDSSSSVVDDSEEYARTSSIRRVLP 190
           P +++ + SV      PK+  K+   V   D  S+ DSSS V+D      R    R VL 
Sbjct: 127 PNLNLGSDSVSSRFPFPKIQVKAGMMVF--DERSESDSSSVVMD----VVRYEGRRVVLD 163

Query: 191 FDLNLPPP 193
            DLN PPP
Sbjct: 187 LDLNFPPP 163

[Close]

BLAST of MS006370 vs. TAIR 10
Match: AT3G15210.1 (ethylene responsive element binding factor 4 )

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-26
Identity = 88/219 (40.18%), Postives = 106/219 (48.40%), Query Frame = 0


Query: 2   RRGRATDPPTAGQTTHEPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAA 61
           + G   DP T  Q TH   KE+R+RGVRKRPWGRYAAEIRDP KKTRVWLGTFDTAE+AA
Sbjct: 3   KMGLKPDPATTNQ-THNNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAA 62

Query: 62  RAYDAAALSLRGPKAKTNFPLHPSAISVHHQIPFSQEFHDSGGFCKIS--NISVNRPTSS 121
           RAYD AA   RG KAKTNFP             F++    S      S   + V   T+ 
Sbjct: 63  RAYDTAARDFRGAKAKTNFPTFLELSDQKVPTGFARSPSQSSTLDCASPPTLVVPSATAG 122

Query: 122 SLSSTVE--------------SFSGPRVSIPAPSVPKLHRKSLPPVSPD----------- 181
           ++   +E                S P   +    +  + R   PPV+             
Sbjct: 123 NVPPQLELSLGGGGGGSCYQIPMSRPVYFLDLMGIGNVGRGQPPPVTSAFRSPVVHVATK 182

Query: 182 -DCHSDCDSSSSVVDDSEEYARTSSIRRVLPFDLNLPPP 193
             C +  DS SS V D E      S  ++L  DLNLPPP
Sbjct: 183 MACGAQSDSDSSSVVDFEGGMEKRS--QLLDLDLNLPPP 218

[Close]

BLAST of MS006370 vs. TAIR 10
Match: AT5G44210.1 (erf domain protein 9 )

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-25
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 21 KEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTAEDAARAYDAAALSLRGPKAKTNF 80
          KEV FRGVRKRPWGRYAAEIRDP KKTRVWLGTFDTAE+AARAYD AA   RG KAKTNF
Sbjct: 29 KEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88

Query: 81 PLHPSAISVH 91
          PL   + +V+
Sbjct: 89 PLPGESTTVN 98

The following BLAST results are available for this feature:

BLAST of MS006370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888524.1	3.0e-105	92.49	ethylene-responsive transcription factor 3-like [Benincasa hispida]	[more]
XP_008449487.1	6.9e-102	89.25	PREDICTED: ethylene-responsive transcription factor 3-like [Cucumis melo] >KAA00...	[more]
XP_004140127.1	1.0e-100	88.79	ethylene-responsive transcription factor 3 [Cucumis sativus] >KGN47972.1 hypothe...	[more]
XP_023511720.1	2.2e-100	88.73	ethylene-responsive transcription factor 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022953046.1	1.1e-99	88.26	ethylene-responsive transcription factor 3-like [Cucurbita moschata]	[more]

BLAST of MS006370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SXS8	2.3e-55	57.45	Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 ...	[more]
O80339	3.8e-50	55.51	Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]
Q9LDE4	1.2e-43	49.79	Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]
Q9C5I3	1.4e-25	46.28	Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana OX=3702 GN=E...	[more]
O80340	1.9e-25	40.18	Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]

BLAST of MS006370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C642	3.4e-102	89.25	Ethylene-responsive transcription factor 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BLI0	3.4e-102	89.25	ethylene-responsive transcription factor 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KHW7	4.8e-101	88.79	AP2/ERF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421660 PE=...	[more]
A0A6J1GLX1	5.4e-100	88.26	ethylene-responsive transcription factor 3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JLV3	3.5e-99	87.32	ethylene-responsive transcription factor 3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of MS006370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50640.1	2.7e-51	55.51	ethylene responsive element binding factor 3	[more]
AT3G20310.1	8.3e-45	49.79	ethylene response factor 7	[more]
AT1G28370.1	1.0e-26	46.28	ERF domain protein 11	[more]
AT3G15210.1	1.3e-26	40.18	ethylene responsive element binding factor 4	[more]
AT5G44210.1	1.1e-25	78.57	erf domain protein 9	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 25..36 score: 60.91 coord: 47..63 score: 73.9
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 24..87 e-value: 2.1E-37 score: 140.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 24..73 e-value: 7.7E-15 score: 54.9
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 24..81 score: 23.90708
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 24..81 e-value: 1.87922E-19 score: 76.5415
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 23..83 e-value: 8.0E-29 score: 101.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..172
None	No IPR available	PANTHER	PTHR31677	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	coord: 15..185
None	No IPR available	PANTHER	PTHR31677:SF157	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3	coord: 15..185
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 25..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006370.1	MS006370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity