MS006366 (gene) Bitter gourd (TR) v1

Overview


Name	MS006366
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-type domain-containing protein
Location	scaffold327: 139909 .. 140406 (+)
RNA-Seq Expression	MS006366
Synteny	MS006366

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCGGCCAAATCGAGGGCGGAGATGGACCAGTTTGAAGCAACGGCTGGGATTGAAGGGAATGGGGTGCTGTGGGGGTTCATGGAGTCCAACATCGTCGACTTTGACGATGATTGAAGGCTTGAGCCGCCATGGGAGCAGCCGCAGAGAGGACGCGGCTCGGAGCTCTGCAGCTTCCGGCATGAACCTGGCCATGGCCCTGGCGGCGGAGCGAAATTTGCGGGGCGATGAAGGGGGCCCCGCCGGCGCCGGCGATGTGAAATCGTTGATGAGATTGTTCGAAGAAATGGACGGTGTGGATTGGAAGACAAAAAGAAAGGAGGGGGAGAATAACGGTGTGGATTGGATGTGCTGCGTGTGCATGGAGAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACGCCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTCAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTT

mRNA sequence

ATGGACCGGCCAAATCGAGGGCGGAGATGGACCAGTTTGAAGCAACGGCTGGGATTGAAGGGAATGGGGTGCTGTGGGGGTTCATGGAGTCCAACATCGTCGACTTTGACGATGATTGAAGGCTTGAGCCGCCATGGGAGCAGCCGCAGAGAGGACGCGGCTCGGAGCTCTGCAGCTTCCGGCATGAACCTGGCCATGGCCCTGGCGGCGGAGCGAAATTTGCGGGGCGATGAAGGGGGCCCCGCCGGCGCCGGCGATGTGAAATCGTTGATGAGATTGTTCGAAGAAATGGACGGTGTGGATTGGAAGACAAAAAGAAAGGAGGGGGAGAATAACGGTGTGGATTGGATGTGCTGCGTGTGCATGGAGAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACGCCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTCAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTT

Coding sequence (CDS)

ATGGACCGGCCAAATCGAGGGCGGAGATGGACCAGTTTGAAGCAACGGCTGGGATTGAAGGGAATGGGGTGCTGTGGGGGTTCATGGAGTCCAACATCGTCGACTTTGACGATGATTGAAGGCTTGAGCCGCCATGGGAGCAGCCGCAGAGAGGACGCGGCTCGGAGCTCTGCAGCTTCCGGCATGAACCTGGCCATGGCCCTGGCGGCGGAGCGAAATTTGCGGGGCGATGAAGGGGGCCCCGCCGGCGCCGGCGATGTGAAATCGTTGATGAGATTGTTCGAAGAAATGGACGGTGTGGATTGGAAGACAAAAAGAAAGGAGGGGGAGAATAACGGTGTGGATTGGATGTGCTGCGTGTGCATGGAGAGGAGTAAAGGCGCGGCTTTTATTCCCTGTGGACACGCCTTCTGTAGGGTATGTTCTAGGGAATTATGGCTCAACAGAGGCACGTGTCCTATTTGCAACCGTTCGATCATTGAGATTCTTGATATTTTT

Protein sequence

MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF

Homology

[Close]

BLAST of MS006366 vs. NCBI nr
Match: XP_022953088.1 (RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022969345.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_022969346.1 RNA-binding protein MEX3B-like [Cucurbita maxima] >XP_023511758.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >XP_023511759.1 RNA-binding protein MEX3B-like [Cucurbita pepo subsp. pepo] >KAG6572419.1 hypothetical protein SDJN03_29147, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 151/170 (88.82%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARS 60
           M+R N GRRW +LKQRLGLKGMGCCGGSWSPTSSTLTMIEG  LSRHGSSR  RED ARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDW 120
           SA+SG+NLAMALAAERNLR DEGGP GAGDVKSLMRLFEEMDG DWKTKRKE EN G DW
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTG-DW 120

Query: 121 MCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
           MCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPICNRSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169

[Close]

BLAST of MS006366 vs. NCBI nr
Match: KAA0061653.1 (zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa] >TYK05853.1 zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 302.0 bits (772), Expect = 3.2e-78
Identity = 151/170 (88.82%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARS 60
           M+R NRGRRW +LKQRLGLKGMGCC GSWSPTSSTLTMIEG  LS HGSSR  RED  RS
Sbjct: 1   MERANRGRRWANLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDW 120
           SAASGMNLAMALAAERNLR DEGGP GA DVKSLMRLFEEMDG DWKTKRKEGENNG DW
Sbjct: 61  SAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNG-DW 120

Query: 121 MCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
           MCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPIC+RSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of MS006366 vs. NCBI nr
Match: KGN47968.1 (hypothetical protein Csa_002927 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 1.1e-75
Identity = 147/170 (86.47%), Postives = 151/170 (88.82%), Query Frame = 0


Query: 1   MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSRR--EDAARS 60
           M+R NR RRWT+L+QRLGLKGMGCC GSWSPTSSTLTMIEG  LS HGSSR   ED  RS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDW 120
           SAASGMNLAMALAAERNLR DEGGP G  DVKSLMRLFEEMDG DWKTKRKE ENNG DW
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNG-DW 120

Query: 121 MCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
           MCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPIC+RSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of MS006366 vs. NCBI nr
Match: XP_023531397.1 (uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398.1 uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274.2 bits (700), Expect = 7.2e-70
Identity = 141/171 (82.46%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 1   MDRPNRGRRWTSLKQRLGL-KGMGCCGGSWSPTSSTLTMIE--GLSRHGSSR--REDAAR 60
           M+RPNRG+RW +LKQRLGL KGMGCCGGSWS TSSTLTMI+  GLSRHGSSR  R+D  R
Sbjct: 62  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 121

Query: 61  SSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVD 120
           SSAASGMNLAMALAAERNL  +EGGP   G+VKSLMRLFEE+DG DWKT+RKE ENNG D
Sbjct: 122 SSAASGMNLAMALAAERNLT-EEGGPT-VGNVKSLMRLFEEIDGGDWKTRRKESENNG-D 181

Query: 121 WMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
           W+CCVCMERSKGAAFIPCGH FCRVCSRELWLN GTCPIC+RSIIEILDIF
Sbjct: 182 WLCCVCMERSKGAAFIPCGHTFCRVCSRELWLNGGTCPICSRSIIEILDIF 229

[Close]

BLAST of MS006366 vs. NCBI nr
Match: KAG6589274.1 (hypothetical protein SDJN03_17839, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274.2 bits (700), Expect = 7.2e-70
Identity = 141/171 (82.46%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 1   MDRPNRGRRWTSLKQRLGL-KGMGCCGGSWSPTSSTLTMIE--GLSRHGSSR--REDAAR 60
           M+RPNRG+RW +LKQRLGL KGMGCCGGSWS TSSTLTMI+  GLSRHGSSR  R+D  R
Sbjct: 62  MERPNRGQRWANLKQRLGLMKGMGCCGGSWSSTSSTLTMIDGIGLSRHGSSRSHRDDGTR 121

Query: 61  SSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVD 120
           SSAASGMNLAMALAAERNL  +EGGP   G+VKSLMRLFEE+DG DWKT+RKE ENNG D
Sbjct: 122 SSAASGMNLAMALAAERNLT-EEGGPT-VGNVKSLMRLFEEIDGGDWKTRRKESENNG-D 181

Query: 121 WMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
           W+CCVCMERSKGAAFIPCGH FCRVCSRELWLN GTCPIC+RSIIEILDIF
Sbjct: 182 WLCCVCMERSKGAAFIPCGHTFCRVCSRELWLNGGTCPICSRSIIEILDIF 229

[Close]

BLAST of MS006366 vs. ExPASy TrEMBL
Match: A0A6J1HXI8 (RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.1e-79
Identity = 151/170 (88.82%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARS 60
           M+R N GRRW +LKQRLGLKGMGCCGGSWSPTSSTLTMIEG  LSRHGSSR  RED ARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDW 120
           SA+SG+NLAMALAAERNLR DEGGP GAGDVKSLMRLFEEMDG DWKTKRKE EN G DW
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTG-DW 120

Query: 121 MCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
           MCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPICNRSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169

[Close]

BLAST of MS006366 vs. ExPASy TrEMBL
Match: A0A6J1GME5 (RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.1e-79
Identity = 151/170 (88.82%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 1   MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARS 60
           M+R N GRRW +LKQRLGLKGMGCCGGSWSPTSSTLTMIEG  LSRHGSSR  RED ARS
Sbjct: 1   MERQNGGRRWANLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSLSRHGSSRSHREDGARS 60

Query: 61  SAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDW 120
           SA+SG+NLAMALAAERNLR DEGGP GAGDVKSLMRLFEEMDG DWKTKRKE EN G DW
Sbjct: 61  SASSGVNLAMALAAERNLRTDEGGPTGAGDVKSLMRLFEEMDGGDWKTKRKESENTG-DW 120

Query: 121 MCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
           MCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPICNRSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICNRSIIEILDIF 169

[Close]

BLAST of MS006366 vs. ExPASy TrEMBL
Match: A0A5A7V0I3 (Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00070 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.6e-78
Identity = 151/170 (88.82%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSR--REDAARS 60
           M+R NRGRRW +LKQRLGLKGMGCC GSWSPTSSTLTMIEG  LS HGSSR  RED  RS
Sbjct: 1   MERANRGRRWANLKQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQREDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDW 120
           SAASGMNLAMALAAERNLR DEGGP GA DVKSLMRLFEEMDG DWKTKRKEGENNG DW
Sbjct: 61  SAASGMNLAMALAAERNLRSDEGGPTGASDVKSLMRLFEEMDGGDWKTKRKEGENNG-DW 120

Query: 121 MCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
           MCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPIC+RSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of MS006366 vs. ExPASy TrEMBL
Match: A0A0A0KEL6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.5e-76
Identity = 147/170 (86.47%), Postives = 151/170 (88.82%), Query Frame = 0


Query: 1   MDRPNRGRRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG--LSRHGSSRR--EDAARS 60
           M+R NR RRWT+L+QRLGLKGMGCC GSWSPTSSTLTMIEG  LS HGSSR   ED  RS
Sbjct: 1   MERANRRRRWTNLRQRLGLKGMGCCRGSWSPTSSTLTMIEGFSLSLHGSSRSQGEDGGRS 60

Query: 61  SAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGVDW 120
           SAASGMNLAMALAAERNLR DEGGP G  DVKSLMRLFEEMDG DWKTKRKE ENNG DW
Sbjct: 61  SAASGMNLAMALAAERNLRNDEGGPTGGSDVKSLMRLFEEMDGGDWKTKRKESENNG-DW 120

Query: 121 MCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
           MCCVCMERSKGAAFIPCGH FCRVCSRELWLNRGTCPIC+RSIIEILDIF
Sbjct: 121 MCCVCMERSKGAAFIPCGHTFCRVCSRELWLNRGTCPICSRSIIEILDIF 169

[Close]

BLAST of MS006366 vs. ExPASy TrEMBL
Match: A0A6J1D257 (baculoviral IAP repeat-containing protein 7-like OS=Momordica charantia OX=3673 GN=LOC111016669 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.9e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 38  MIEGLSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEM 97
           MIEGLSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEM
Sbjct: 1   MIEGLSRHGSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEM 60

Query: 98  DGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNR 157
           DGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNR
Sbjct: 61  DGVDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNR 120

Query: 158 SIIEILDIF 167
           SIIEILDIF
Sbjct: 121 SIIEILDIF 129

[Close]

BLAST of MS006366 vs. TAIR 10
Match: AT4G03965.1 (RING/U-box superfamily protein )

HSP 1 Score: 137.5 bits (345), Expect = 9.7e-33
Identity = 87/180 (48.33%), Postives = 107/180 (59.44%), Query Frame = 0


Query: 1   MDRPNRGRRWTSLKQRLGLKGMGCCGGSWS--PTSSTLTMIEGLSRHGSSRREDAARSSA 60
           +DR  R +R  +LK+RLG K +GCCG +W    TS+T    +    +      D      
Sbjct: 32  LDRSRRRKR--TLKERLGFKRIGCCGPTWGLRLTSNTGEDDDEPFENRLVSGSDHVTGPL 91

Query: 61  ASGMNLAMALAAERNLRGDEGGPAGA-GDVK-SLMRLFEEM--------DGVDWKTKRKE 120
             GMNLA ALAAERN R +E   +G+   +K SLMRL EE         +  +  T    
Sbjct: 92  NQGMNLATALAAERNYRTEETEASGSLTPLKVSLMRLLEETAERVVVEENETERVTASAS 151

Query: 121 GENNGV--DWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
               GV  D +CCVCM R KGAAFIPCGH FCRVCSRE+WLNRG+CP+CNR IIEILDI+
Sbjct: 152 STVRGVNNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEILDIY 209

[Close]

BLAST of MS006366 vs. TAIR 10
Match: AT4G22250.1 (RING/U-box superfamily protein )

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-32
Identity = 86/182 (47.25%), Postives = 101/182 (55.49%), Query Frame = 0


Query: 8   RRWTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEGLSRHGSSRREDAARS----------- 67
           RR  +LK+RL  K +GCCG +W+     L +    + H  + R+D               
Sbjct: 38  RRKRTLKERLRFKCIGCCGPTWN-----LRLTNNTTLHSPTSRDDEIEELQIETGLVLES 97

Query: 68  --SAASGMNLAMALAAERNLRGD--EGGPAGAGDVKSLMRLFEEMDG--VDWKTKRKE-- 127
              + +GMNLA AL AER  RG+  E          SLMRL EE     VD   K  E  
Sbjct: 98  DHGSGTGMNLATALEAERYNRGESTEAEADMTPRRVSLMRLLEETAEKIVDDDGKETEIL 157

Query: 128 ----GENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILD 167
               G   G D +CCVCM R KGAAFIPCGH FCRVCSRELWLNRG+CP+CNR IIEILD
Sbjct: 158 TASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILD 214

[Close]

BLAST of MS006366 vs. TAIR 10
Match: AT1G62370.1 (RING/U-box superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-27
Identity = 73/172 (42.44%), Postives = 93/172 (54.07%), Query Frame = 0


Query: 9   RWTSLKQRLGLKGMGCCGGSWS---PTSSTLTMIEGLSRHGSSRREDAARSSAASG---- 68
           +WT+LKQRL    +GCCG   +     + T  +++       S+ +    S   +G    
Sbjct: 40  KWTTLKQRLRFDWVGCCGKPLTLRLRQAETPIVVDDDDDEEESQNQVVDFSDPGTGTELD 99

Query: 69  -------MNLAMALAAERNLRGDEGGPAGAGDVKSLMRLFEEMDGVDWKTKRKEGENNGV 128
                   NLA ALA ER     E     A     LMRL  E DG D  T        G 
Sbjct: 100 CLTRGSTRNLAEALAEERLAHVTE--EETAVTKVPLMRLLAESDGCDSTTTWL-----GN 159

Query: 129 DWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPICNRSIIEILDIF 167
           D +CCVCM R KGAAFIPCGH +CRVCSRE+W+NRGTCP+CNRSI ++LD++
Sbjct: 160 DPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204

[Close]

BLAST of MS006366 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-24
Identity = 75/191 (39.27%), Postives = 96/191 (50.26%), Query Frame = 0


Query: 1   MDRPNRGRR----WTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG-----------LSRH 60
           M R +R  R    W SL+++L LK  G    S +   S  T I             LS  
Sbjct: 63  MQREHRHSRDKTAWKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNS 122

Query: 61  GSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVK----SLMRLFEEMDG-- 120
           G+   E    SS    + L   LA ER L   E       +V+    SLM L EE +G  
Sbjct: 123 GNVTEE---ASSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQM 182

Query: 121 ----VDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPIC 167
               VD + + +       +  CCVCM RSKGAAFIPCGH FCR+CSRELW+ RG CP+C
Sbjct: 183 SFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLC 242

[Close]

BLAST of MS006366 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-24
Identity = 75/191 (39.27%), Postives = 96/191 (50.26%), Query Frame = 0


Query: 1   MDRPNRGRR----WTSLKQRLGLKGMGCCGGSWSPTSSTLTMIEG-----------LSRH 60
           M R +R  R    W SL+++L LK  G    S +   S  T I             LS  
Sbjct: 63  MQREHRHSRDKTAWKSLREKLRLKRNGSVWISSNSIPSLDTPIPNRDNVSHQLGFLLSNS 122

Query: 61  GSSRREDAARSSAASGMNLAMALAAERNLRGDEGGPAGAGDVK----SLMRLFEEMDG-- 120
           G+   E    SS    + L   LA ER L   E       +V+    SLM L EE +G  
Sbjct: 123 GNVTEE---ASSVEGRIRLGAVLAEERALSAREEETPAEREVEPARMSLMELLEENEGQM 182

Query: 121 ----VDWKTKRKEGENNGVDWMCCVCMERSKGAAFIPCGHAFCRVCSRELWLNRGTCPIC 167
               VD + + +       +  CCVCM RSKGAAFIPCGH FCR+CSRELW+ RG CP+C
Sbjct: 183 SFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLC 242

The following BLAST results are available for this feature:

BLAST of MS006366 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953088.1	1.9e-78	88.82	RNA-binding protein MEX3B-like [Cucurbita moschata] >XP_022953089.1 RNA-binding ...	[more]
KAA0061653.1	3.2e-78	88.82	zf-C3HC4_3 domain-containing protein [Cucumis melo var. makuwa] >TYK05853.1 zf-C...	[more]
KGN47968.1	1.1e-75	86.47	hypothetical protein Csa_002927 [Cucumis sativus]	[more]
XP_023531397.1	7.2e-70	82.46	uncharacterized protein LOC111793648 [Cucurbita pepo subsp. pepo] >XP_023531398....	[more]
KAG6589274.1	7.2e-70	82.46	hypothetical protein SDJN03_17839, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS006366 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS006366 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HXI8	9.1e-79	88.82	RNA-binding protein MEX3B-like OS=Cucurbita maxima OX=3661 GN=LOC111468383 PE=4 ...	[more]
A0A6J1GME5	9.1e-79	88.82	RNA-binding protein MEX3B-like OS=Cucurbita moschata OX=3662 GN=LOC111455597 PE=...	[more]
A0A5A7V0I3	1.6e-78	88.82	Zf-C3HC4_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KEL6	5.5e-76	86.47	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421620 P...	[more]
A0A6J1D257	1.9e-68	100.00	baculoviral IAP repeat-containing protein 7-like OS=Momordica charantia OX=3673 ...	[more]

BLAST of MS006366 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03965.1	9.7e-33	48.33	RING/U-box superfamily protein	[more]
AT4G22250.1	2.8e-32	47.25	RING/U-box superfamily protein	[more]
AT1G62370.1	2.1e-27	42.44	RING/U-box superfamily protein	[more]
AT3G25030.1	2.8e-24	39.27	RING/U-box superfamily protein	[more]
AT3G25030.2	2.8e-24	39.27	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..155 e-value: 4.1E-7 score: 39.6
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 118..156 score: 11.264779
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 117..161 e-value: 2.5E-12 score: 46.4
None	No IPR available	PANTHER	PTHR46629:SF18	LIGASE, PUTATIVE-RELATED	coord: 1..166
None	No IPR available	PANTHER	PTHR46629	OS01G0917900 PROTEIN	coord: 1..166
None	No IPR available	CDD	cd16449	RING-HC	coord: 118..155 e-value: 5.0808E-8 score: 45.1509
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 108..163
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 95..166 e-value: 5.7E-14 score: 53.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006366.1	MS006366.1	mRNA