MS006357 (gene) Bitter gourd (TR) v1

Overview
NameMS006357
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionOligouridylate binding protein 1B isoform 1
Locationscaffold327: 85426 .. 85577 (-)
RNA-Seq ExpressionMS006357
SyntenyMS006357
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGCTTTACCCCGAAGGGAGCCCTTCCAGAAATTCTCTTGGGCCTGGGCCAAACCCAGGCCAAAGAGGGGGTTTGGAAATAGTTTTCAACCAGCAATTGACGCGCCTCGGTTAGAACCTCACTAGCTGCGTCATTGCCCCAAGCGCAAAGA

mRNA sequence

AGGGCTTTACCCCGAAGGGAGCCCTTCCAGAAATTCTCTTGGGCCTGGGCCAAACCCAGGCCAAAGAGGGGGTTTGGAAATAGTTTTCAACCAGCAATTGCCTCGGTTAGAACCTCACTAGCTGCGTCATTGCCCCAAGCGCAAAGA

Coding sequence (CDS)

AGGGCTTTACCCCGAAGGGAGCCCTTCCAGAAATTCTCTTGGGCCTGGGCCAAACCCAGGCCAAAGAGGGGGTTTGGAAATAGTTTTCAACCAGCAATTGCCTCGGTTAGAACCTCACTAGCTGCGTCATTGCCCCAAGCGCAAAGA

Protein sequence

RALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVRTSLAASLPQAQR
Homology
BLAST of MS006357 vs. NCBI nr
Match: KAG6572411.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 6.1e-09
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 1   RALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVR 38
           RALPRREPFQKFS AWAKPRPKRGFGNSFQPAI + R
Sbjct: 155 RALPRREPFQKFSKAWAKPRPKRGFGNSFQPAIDAPR 191

BLAST of MS006357 vs. NCBI nr
Match: OMO87319.1 (hypothetical protein CCACVL1_09133 [Corchorus capsularis])

HSP 1 Score: 63.2 bits (152), Expect = 7.4e-07
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1  RALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVR 38
          RALPRREPFQKFS A  KPRPKRGFGNSFQPAI + R
Sbjct: 14 RALPRREPFQKFSKARVKPRPKRGFGNSFQPAIDAPR 50

BLAST of MS006357 vs. NCBI nr
Match: RDX78474.1 (hypothetical protein CR513_41250, partial [Mucuna pruriens])

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 2  ALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVR 38
          ALP+REPFQKFS A AKPRPKRGFGNSFQPAI + R
Sbjct: 54 ALPQREPFQKFSKAGAKPRPKRGFGNSFQPAIDAPR 89

BLAST of MS006357 vs. NCBI nr
Match: KAE8698410.1 (Oligouridylate binding protein 1B isoform 1 [Hibiscus syriacus])

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 1   RALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVR 38
           RALPRREPF+KFS A +KPRPKRGFGNSFQPAI + R
Sbjct: 197 RALPRREPFKKFSKARSKPRPKRGFGNSFQPAIDAPR 233

BLAST of MS006357 vs. NCBI nr
Match: DAD46666.1 (TPA_asm: hypothetical protein HUJ06_016603 [Nelumbo nucifera])

HSP 1 Score: 61.6 bits (148), Expect = 2.2e-06
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1  RALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVR 38
          RALP REPFQKFS A A+PRPKRGFGNSFQPAI + R
Sbjct: 18 RALPEREPFQKFSTARAEPRPKRGFGNSFQPAIDAPR 54

BLAST of MS006357 vs. ExPASy TrEMBL
Match: A0A2C9UQ09 (Uncharacterized protein (Fragment) OS=Manihot esculenta OX=3983 GN=MANES_13G018600 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1  RALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVR 38
          RALPRREPFQKFS A  KPRPKRGFGNSFQPAI + R
Sbjct: 9  RALPRREPFQKFSTARVKPRPKRGFGNSFQPAIDAPR 45

BLAST of MS006357 vs. ExPASy TrEMBL
Match: A0A1R3IXK6 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09133 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-07
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1  RALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVR 38
          RALPRREPFQKFS A  KPRPKRGFGNSFQPAI + R
Sbjct: 14 RALPRREPFQKFSKARVKPRPKRGFGNSFQPAIDAPR 50

BLAST of MS006357 vs. ExPASy TrEMBL
Match: A0A6A3A274 (Oligouridylate binding protein 1B isoform 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110597pilonHSYRG00134 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.0e-07
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 1   RALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVR 38
           RALPRREPF+KFS A +KPRPKRGFGNSFQPAI + R
Sbjct: 197 RALPRREPFKKFSKARSKPRPKRGFGNSFQPAIDAPR 233

BLAST of MS006357 vs. ExPASy TrEMBL
Match: A0A371FJJ9 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_41250 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.0e-07
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 2  ALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVR 38
          ALP+REPFQKFS A AKPRPKRGFGNSFQPAI + R
Sbjct: 54 ALPQREPFQKFSKAGAKPRPKRGFGNSFQPAIDAPR 89

BLAST of MS006357 vs. ExPASy TrEMBL
Match: A0A2C9UY74 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G133800 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.0e-07
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 2  ALPRREPFQKFSWAWAKPRPKRGFGNSFQPAIASVR 38
          ALPRREPFQKFS A  KPRPKRGFGNSFQPAI + R
Sbjct: 7  ALPRREPFQKFSTARVKPRPKRGFGNSFQPAIDAPR 42

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6572411.16.1e-0989.19PLASMODESMATA CALLOSE-BINDING PROTEIN 5, partial [Cucurbita argyrosperma subsp. ... [more]
OMO87319.17.4e-0783.78hypothetical protein CCACVL1_09133 [Corchorus capsularis][more]
RDX78474.11.6e-0683.33hypothetical protein CR513_41250, partial [Mucuna pruriens][more]
KAE8698410.11.6e-0681.08Oligouridylate binding protein 1B isoform 1 [Hibiscus syriacus][more]
DAD46666.12.2e-0681.08TPA_asm: hypothetical protein HUJ06_016603 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2C9UQ092.7e-0783.78Uncharacterized protein (Fragment) OS=Manihot esculenta OX=3983 GN=MANES_13G0186... [more]
A0A1R3IXK63.6e-0783.78Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09133 PE=4 ... [more]
A0A6A3A2748.0e-0781.08Oligouridylate binding protein 1B isoform 1 OS=Hibiscus syriacus OX=106335 GN=F3... [more]
A0A371FJJ98.0e-0783.33Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_41250 P... [more]
A0A2C9UY748.0e-0783.33Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G133800 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006357.1MS006357.1mRNA