MS006355 (gene) Bitter gourd (TR) v1

Overview


Name	MS006355
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold327: 81075 .. 81362 (-)
RNA-Seq Expression	MS006355
Synteny	MS006355

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCGCCGCCGTCCGATCTCACTCCGGCAAGGAGAATCTCGCGCCGTTTTCTCAGAAGCCGTTTCCCCCAAATGCGAAGAAATCCACTAGAAGGAGATTGAATCGGAAGCCGCTCGCCGATATTACCTATTTGTTCGAGAACACTGTTCAATTCGGTTCGATTTTGGTTCAGGATCGATGGATCTCCTCTGAATCGGCTTGTTCTCTGTCGAATTCGAGGAAAAGGAAGGCTGCCGATGAAATTTGTTCTGCAACTGCTAAATCGCTTAGAATGGGATTCAGA

mRNA sequence

ATGGAGTTCGCCGCCGTCCGATCTCACTCCGGCAAGGAGAATCTCGCGCCGTTTTCTCAGAAGCCGTTTCCCCCAAATGCGAAGAAATCCACTAGAAGGAGATTGAATCGGAAGCCGCTCGCCGATATTACCTATTTGTTCGAGAACACTGTTCAATTCGGTTCGATTTTGGTTCAGGATCGATGGATCTCCTCTGAATCGGCTTGTTCTCTGTCGAATTCGAGGAAAAGGAAGGCTGCCGATGAAATTTGTTCTGCAACTGCTAAATCGCTTAGAATGGGATTCAGA

Coding sequence (CDS)

ATGGAGTTCGCCGCCGTCCGATCTCACTCCGGCAAGGAGAATCTCGCGCCGTTTTCTCAGAAGCCGTTTCCCCCAAATGCGAAGAAATCCACTAGAAGGAGATTGAATCGGAAGCCGCTCGCCGATATTACCTATTTGTTCGAGAACACTGTTCAATTCGGTTCGATTTTGGTTCAGGATCGATGGATCTCCTCTGAATCGGCTTGTTCTCTGTCGAATTCGAGGAAAAGGAAGGCTGCCGATGAAATTTGTTCTGCAACTGCTAAATCGCTTAGAATGGGATTCAGA

Protein sequence

MEFAAVRSHSGKENLAPFSQKPFPPNAKKSTRRRLNRKPLADITYLFENTVQFGSILVQDRWISSESACSLSNSRKRKAADEICSATAKSLRMGFR

Homology

[Close]

BLAST of MS006355 vs. NCBI nr
Match: KAG6589263.1 (hypothetical protein SDJN03_17828, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 69/97 (71.13%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 1  MEFAAVRSHSGKENLAPFSQKPFPPNAKKS-TRRRLNRKPLADITYLFENTVQFGSILVQ 60
          MEFAAVR  SGKENL   SQK FPPN KK  TRRRLNRKPLADIT  FE++V+F    VQ
Sbjct: 1  MEFAAVRFPSGKENLPLLSQKQFPPNQKKPITRRRLNRKPLADITNSFESSVRFS--FVQ 60

Query: 61 DRWISSESACSLSNSRKRKAADEICSATAKSLRMGFR 97
          D   S ES C   NS+KRKAADEICS TAKSLRMGFR
Sbjct: 61 DHSGSVESVCLQLNSKKRKAADEICSGTAKSLRMGFR 95

[Close]

BLAST of MS006355 vs. NCBI nr
Match: KGN47955.1 (hypothetical protein Csa_002785 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 1   MEFAAVRSHSGKENLAPFSQKPFPPNAKKST-RRRLNRKPLADITYLFENTVQFGSILVQ 60
           MEF+AVR HS KENL PF+ K +P   KK T RRRLNRKPL DIT  FENT++ GSI  Q
Sbjct: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSI--Q 120

Query: 61  DRWISS-ESACSLSNSRKRKAADEICSATAKSLRMGFR 97
           D +I+S ES C   NSRKRKA DE+ S TAKSLRMGFR
Sbjct: 121 DGFIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 156

[Close]

BLAST of MS006355 vs. NCBI nr
Match: OAY33953.1 (hypothetical protein MANES_13G138400v8 [Manihot esculenta])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 1   MEFAA--VRSHSGKENLAPFSQKPFPP------NAKKSTRRRLNRKPLADITYLFENTVQ 60
           MEF A     HS KEN+ PFS KP  P      ++KK  RRR+ R+PL DITY + ++VQ
Sbjct: 1   MEFTAKLCDHHSNKENIPPFSAKPANPIPASVASSKKKFRRRI-REPLEDITYFYRSSVQ 60

Query: 61  FGSILVQDRWISSESACSLSNSRKRKAADE-------ICSATAKSLRMGFR 97
                  D   +   + S SNS+KRKA+D+       +   ++KSLR GFR
Sbjct: 61  LALAQEDDSLSAISVSGSASNSKKRKASDQENEDTGAVAGPSSKSLRFGFR 110

[Close]

BLAST of MS006355 vs. NCBI nr
Match: CAB4303764.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-06
Identity = 51/120 (42.50%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 1   MEFAAVRSHSGKENLAPFS-----QKPFPPNAKKS----TRRRLNRKPLADIT--YLFEN 60
           ME  A R HS KENL P S       P P N   S     + RL RKPLADIT  Y++ N
Sbjct: 1   MEAIACRDHSNKENLPPSSAMANLTNPVPENGSSSKKCNKKTRLRRKPLADITNLYIYGN 60

Query: 61  TVQFG------SILVQDRWISSESACSLSNSRKRKAADE-------ICSATAKSLRMGFR 97
              FG      S  +     SS  + S SNSRKRK+  E       + S+ +KSLRMGFR
Sbjct: 61  QSSFGLSDHLPSATLPFSSSSSSVSGSASNSRKRKSTQEDNTNSSIVNSSNSKSLRMGFR 120

[Close]

BLAST of MS006355 vs. NCBI nr
Match: CAB4273203.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-06
Identity = 51/120 (42.50%), Postives = 61/120 (50.83%), Query Frame = 0


Query: 1   MEFAAVRSHSGKENLAPFS-----QKPFPPNAKKS----TRRRLNRKPLADIT--YLFEN 60
           ME +A R HS KENL P S       P P N   S     + RL RKPLADIT  Y++ N
Sbjct: 1   MEASACRYHSNKENLPPSSAMANLTNPVPENGSSSKKCNKKTRLRRKPLADITNLYIYGN 60

Query: 61  TVQFG------SILVQDRWISSESACSLSNSRKRKAADE-------ICSATAKSLRMGFR 97
              FG      S  +     SS  + S SNSRKRK+  E       + S+ +KSLRMGFR
Sbjct: 61  QSSFGLSDHLPSATLPFSSSSSSVSGSASNSRKRKSTQEDNTNSSKVNSSNSKSLRMGFR 120

[Close]

BLAST of MS006355 vs. ExPASy TrEMBL
Match: A0A0A0KE31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419520 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.5e-21
Identity = 65/98 (66.33%), Postives = 73/98 (74.49%), Query Frame = 0


Query: 1   MEFAAVRSHSGKENLAPFSQKPFPPNAKKST-RRRLNRKPLADITYLFENTVQFGSILVQ 60
           MEF+AVR HS KENL PF+ K +P   KK T RRRLNRKPL DIT  FENT++ GSI  Q
Sbjct: 61  MEFSAVRFHSDKENLPPFTHKLYPSIPKKPTIRRRLNRKPLLDITNSFENTIRLGSI--Q 120

Query: 61  DRWISS-ESACSLSNSRKRKAADEICSATAKSLRMGFR 97
           D +I+S ES C   NSRKRKA DE+ S TAKSLRMGFR
Sbjct: 121 DGFIASVESVCLQPNSRKRKAGDEVYSGTAKSLRMGFR 156

[Close]

BLAST of MS006355 vs. ExPASy TrEMBL
Match: A0A2C9URL6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G138400 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.3e-08
Identity = 46/111 (41.44%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 1   MEFAA--VRSHSGKENLAPFSQKPFPP------NAKKSTRRRLNRKPLADITYLFENTVQ 60
           MEF A     HS KEN+ PFS KP  P      ++KK  RRR+ R+PL DITY + ++VQ
Sbjct: 1   MEFTAKLCDHHSNKENIPPFSAKPANPIPASVASSKKKFRRRI-REPLEDITYFYRSSVQ 60

Query: 61  FGSILVQDRWISSESACSLSNSRKRKAADE-------ICSATAKSLRMGFR 97
                  D   +   + S SNS+KRKA+D+       +   ++KSLR GFR
Sbjct: 61  LALAQEDDSLSAISVSGSASNSKKRKASDQENEDTGAVAGPSSKSLRFGFR 110

[Close]

BLAST of MS006355 vs. ExPASy TrEMBL
Match: A0A7N2R9E8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.4e-07
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 0


Query: 1   MEFAAVRSHSGKENLAPFSQK---PFPPNA---KKSTRRRLNRKPLADITYLFENTVQFG 60
           ME  A    + KEN+ PFS K   P P NA   KK+ +RRL RKPLADIT LF ++ Q  
Sbjct: 1   MEGIAFCDCNNKENIPPFSTKRANPVPANALSSKKTNKRRL-RKPLADITNLFYDSFQPS 60

Query: 61  SI--LVQDRWISSESACSLSNSRKRKA-----ADEICSATAKSLRMGFR 97
           S+   V     SS S+ S+SN RKRKA     + E+ ++ +KSLRMGFR
Sbjct: 61  SVPESVYLLLSSSASSVSVSNPRKRKATLKTGSVEVATSNSKSLRMGFR 108

[Close]

BLAST of MS006355 vs. ExPASy TrEMBL
Match: A0A6J5WXG2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20403 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 51/120 (42.50%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 1   MEFAAVRSHSGKENLAPFS-----QKPFPPNAKKS----TRRRLNRKPLADIT--YLFEN 60
           ME  A R HS KENL P S       P P N   S     + RL RKPLADIT  Y++ N
Sbjct: 1   MEAIACRDHSNKENLPPSSAMANLTNPVPENGSSSKKCNKKTRLRRKPLADITNLYIYGN 60

Query: 61  TVQFG------SILVQDRWISSESACSLSNSRKRKAADE-------ICSATAKSLRMGFR 97
              FG      S  +     SS  + S SNSRKRK+  E       + S+ +KSLRMGFR
Sbjct: 61  QSSFGLSDHLPSATLPFSSSSSSVSGSASNSRKRKSTQEDNTNSSIVNSSNSKSLRMGFR 120

[Close]

BLAST of MS006355 vs. ExPASy TrEMBL
Match: A0A6J5UAF7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20443 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.7e-06
Identity = 51/120 (42.50%), Postives = 61/120 (50.83%), Query Frame = 0


Query: 1   MEFAAVRSHSGKENLAPFS-----QKPFPPNAKKS----TRRRLNRKPLADIT--YLFEN 60
           ME +A R HS KENL P S       P P N   S     + RL RKPLADIT  Y++ N
Sbjct: 1   MEASACRYHSNKENLPPSSAMANLTNPVPENGSSSKKCNKKTRLRRKPLADITNLYIYGN 60

Query: 61  TVQFG------SILVQDRWISSESACSLSNSRKRKAADE-------ICSATAKSLRMGFR 97
              FG      S  +     SS  + S SNSRKRK+  E       + S+ +KSLRMGFR
Sbjct: 61  QSSFGLSDHLPSATLPFSSSSSSVSGSASNSRKRKSTQEDNTNSSKVNSSNSKSLRMGFR 120

The following BLAST results are available for this feature:

BLAST of MS006355 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589263.1	1.1e-22	71.13	hypothetical protein SDJN03_17828, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN47955.1	1.4e-20	66.33	hypothetical protein Csa_002785 [Cucumis sativus]	[more]
OAY33953.1	1.7e-07	41.44	hypothetical protein MANES_13G138400v8 [Manihot esculenta]	[more]
CAB4303764.1	5.5e-06	42.50	unnamed protein product [Prunus armeniaca]	[more]
CAB4273203.1	5.5e-06	42.50	unnamed protein product [Prunus armeniaca]	[more]

BLAST of MS006355 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS006355 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE31	6.5e-21	66.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419520 PE=4 SV=1	[more]
A0A2C9URL6	8.3e-08	41.44	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G138400 PE=4 SV=...	[more]
A0A7N2R9E8	2.4e-07	47.71	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6J5WXG2	2.7e-06	42.50	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS20403 PE=...	[more]
A0A6J5UAF7	2.7e-06	42.50	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20443 PE=4 S...	[more]

BLAST of MS006355 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006355.1	MS006355.1	mRNA