MS006350 (gene) Bitter gourd (TR) v1

Overview


Name	MS006350
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	signaling peptide TAXIMIN 1
Location	scaffold327: 49099 .. 49468 (-)
RNA-Seq Expression	MS006350
Synteny	MS006350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTGCGATGGCGATTGTCGCCCACTGGGCTTCCTGCTTGGCTTGCCTTTTGCTTTCCTTTCTCTTCTCCTCTCCATCGTCGGCGTACTTGTCTGGATTGTCGGGTAAATTTCTCCAAAACCCACAAAATTTTAGCTTCTGGGTGTTCGTAATTCGGGTTTTTTCCCCTCCCAAATCCGTTCTACTTTTCATTTATTAATCGATTCGTGAGTCGTAACTGTTTTCTCCTTGGAATTTTGTGCGCAGATTGATGCTTACTTGCATATGTCCCTGTTGTTTGTGCTTGACGGTGATAGTGGAGCTCGCCTTGGAGCTGATCAAAGCCCCGATTCACGTCATGGAGTGGTTCACTTCCCAAATTCCATGT

mRNA sequence

ATGTGCTGCGATGGCGATTGTCGCCCACTGGGCTTCCTGCTTGGCTTGCCTTTTGCTTTCCTTTCTCTTCTCCTCTCCATCGTCGGCGTACTTGTCTGGATTGTCGGATTGATGCTTACTTGCATATGTCCCTGTTGTTTGTGCTTGACGGTGATAGTGGAGCTCGCCTTGGAGCTGATCAAAGCCCCGATTCACGTCATGGAGTGGTTCACTTCCCAAATTCCATGT

Coding sequence (CDS)

ATGTGCTGCGATGGCGATTGTCGCCCACTGGGCTTCCTGCTTGGCTTGCCTTTTGCTTTCCTTTCTCTTCTCCTCTCCATCGTCGGCGTACTTGTCTGGATTGTCGGATTGATGCTTACTTGCATATGTCCCTGTTGTTTGTGCTTGACGGTGATAGTGGAGCTCGCCTTGGAGCTGATCAAAGCCCCGATTCACGTCATGGAGTGGTTCACTTCCCAAATTCCATGT

Protein sequence

MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELIKAPIHVMEWFTSQIPC

Homology

[Close]

BLAST of MS006350 vs. NCBI nr
Match: XP_022147895.1 (uncharacterized protein LOC111016720 [Momordica charantia])

HSP 1 Score: 154.1 bits (388), Expect = 4.9e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI 60
          MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI
Sbjct: 1  MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI 60

Query: 61 KAPIHVMEWFTSQIPC 77
          KAPIHVMEWFTSQIPC
Sbjct: 61 KAPIHVMEWFTSQIPC 76

[Close]

BLAST of MS006350 vs. NCBI nr
Match: XP_034702088.1 (signaling peptide TAXIMIN 1 [Vitis riparia] >RVW46767.1 hypothetical protein CK203_084505 [Vitis vinifera] >RVX09291.1 hypothetical protein CK203_015458 [Vitis vinifera])

HSP 1 Score: 148.7 bits (374), Expect = 2.1e-32
Identity = 70/76 (92.11%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI 60
          MCCDGDCRPLGFLLGLPFAFLSLL+SIVGV++WIVGL+LTCICPCCLC+TV+VELALELI
Sbjct: 1  MCCDGDCRPLGFLLGLPFAFLSLLISIVGVVIWIVGLLLTCICPCCLCVTVLVELALELI 60

Query: 61 KAPIHVMEWFTSQIPC 77
          KAPIHVMEWFTSQIPC
Sbjct: 61 KAPIHVMEWFTSQIPC 76

[Close]

BLAST of MS006350 vs. NCBI nr
Match: XP_002279581.1 (PREDICTED: uncharacterized protein LOC100260766 [Vitis vinifera] >CBI21952.3 unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 148.3 bits (373), Expect = 2.7e-32
Identity = 69/76 (90.79%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI 60
          MCCDGDCRPLGFLLGLPFAFLSLL+SI+GV++WIVGL+LTCICPCCLC+TV+VELALELI
Sbjct: 1  MCCDGDCRPLGFLLGLPFAFLSLLISIIGVVIWIVGLLLTCICPCCLCVTVLVELALELI 60

Query: 61 KAPIHVMEWFTSQIPC 77
          KAPIHVMEWFTSQIPC
Sbjct: 61 KAPIHVMEWFTSQIPC 76

[Close]

BLAST of MS006350 vs. NCBI nr
Match: OVA14505.1 (hypothetical protein BVC80_1037g53 [Macleaya cordata])

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 68/75 (90.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 2  CCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELIK 61
          CCDGDCRPLGFLLGLPFAFLSLLLSI+GV++WIVGL+LTCICPCCLC+T+IVELALELIK
Sbjct: 3  CCDGDCRPLGFLLGLPFAFLSLLLSIIGVVIWIVGLLLTCICPCCLCVTIIVELALELIK 62

Query: 62 APIHVMEWFTSQIPC 77
          APIHVMEWFTS+IPC
Sbjct: 63 APIHVMEWFTSKIPC 77

[Close]

BLAST of MS006350 vs. NCBI nr
Match: XP_024987348.1 (uncharacterized protein LOC112522459 [Cynara cardunculus var. scolymus])

HSP 1 Score: 145.6 bits (366), Expect = 1.8e-31
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MCC-DGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALEL 60
          MCC DGDCRPLGFLLGLPFAFLSLLLSIVGV+VWIVGL+LTCICPCCLCLTVIVE+A+EL
Sbjct: 1  MCCGDGDCRPLGFLLGLPFAFLSLLLSIVGVVVWIVGLLLTCICPCCLCLTVIVEIAIEL 60

Query: 61 IKAPIHVMEWFTSQIPC 77
          IKAPIHVMEWFTSQIPC
Sbjct: 61 IKAPIHVMEWFTSQIPC 77

[Close]

BLAST of MS006350 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 4.1e-31
Identity = 62/74 (83.78%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 3  CDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELIKA 62
          CDGDCRPLGFLLGLPFAFLSLLLSI+GV++WIVGL+L+CICPCCLC+TV+VE+A+ LIKA
Sbjct: 2  CDGDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKA 61

Query: 63 PIHVMEWFTSQIPC 77
          PIHVMEWF S+IPC
Sbjct: 62 PIHVMEWFMSKIPC 75

[Close]

BLAST of MS006350 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.2e-20
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 5  GDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELIKAPI 64
          GDCRPLGFL+GLPFA ++L+L++VG ++WI+G +L+C+CPCC C   +   A++LIK PI
Sbjct: 2  GDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPI 61

Query: 65 HVMEWFTSQIPC 77
           V+ WFT  IPC
Sbjct: 62 KVLRWFTHSIPC 73

[Close]

BLAST of MS006350 vs. ExPASy TrEMBL
Match: A0A6J1D1E5 (uncharacterized protein LOC111016720 OS=Momordica charantia OX=3673 GN=LOC111016720 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.4e-34
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI 60
          MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI
Sbjct: 1  MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI 60

Query: 61 KAPIHVMEWFTSQIPC 77
          KAPIHVMEWFTSQIPC
Sbjct: 61 KAPIHVMEWFTSQIPC 76

[Close]

BLAST of MS006350 vs. ExPASy TrEMBL
Match: A0A438JK03 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_015458 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 70/76 (92.11%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI 60
          MCCDGDCRPLGFLLGLPFAFLSLL+SIVGV++WIVGL+LTCICPCCLC+TV+VELALELI
Sbjct: 1  MCCDGDCRPLGFLLGLPFAFLSLLISIVGVVIWIVGLLLTCICPCCLCVTVLVELALELI 60

Query: 61 KAPIHVMEWFTSQIPC 77
          KAPIHVMEWFTSQIPC
Sbjct: 61 KAPIHVMEWFTSQIPC 76

[Close]

BLAST of MS006350 vs. ExPASy TrEMBL
Match: E0CTN6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g02490 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 69/76 (90.79%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI 60
          MCCDGDCRPLGFLLGLPFAFLSLL+SI+GV++WIVGL+LTCICPCCLC+TV+VELALELI
Sbjct: 1  MCCDGDCRPLGFLLGLPFAFLSLLISIIGVVIWIVGLLLTCICPCCLCVTVLVELALELI 60

Query: 61 KAPIHVMEWFTSQIPC 77
          KAPIHVMEWFTSQIPC
Sbjct: 61 KAPIHVMEWFTSQIPC 76

[Close]

BLAST of MS006350 vs. ExPASy TrEMBL
Match: A0A200QVP3 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1037g53 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.5e-32
Identity = 68/75 (90.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 2  CCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELIK 61
          CCDGDCRPLGFLLGLPFAFLSLLLSI+GV++WIVGL+LTCICPCCLC+T+IVELALELIK
Sbjct: 3  CCDGDCRPLGFLLGLPFAFLSLLLSIIGVVIWIVGLLLTCICPCCLCVTIIVELALELIK 62

Query: 62 APIHVMEWFTSQIPC 77
          APIHVMEWFTS+IPC
Sbjct: 63 APIHVMEWFTSKIPC 77

[Close]

BLAST of MS006350 vs. ExPASy TrEMBL
Match: A0A2G9GM78 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21067 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-31
Identity = 64/76 (84.21%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MCCDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELI 60
          MCCDGDCRPLGFLLGLPFAFLSL++S++G+++WIVGL+L+CICPCCLC+TV+VE+ALELI
Sbjct: 1  MCCDGDCRPLGFLLGLPFAFLSLIISLIGIVIWIVGLLLSCICPCCLCVTVLVEMALELI 60

Query: 61 KAPIHVMEWFTSQIPC 77
          KAPIHVMEWFTSQIPC
Sbjct: 61 KAPIHVMEWFTSQIPC 76

[Close]

BLAST of MS006350 vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 134.8 bits (338), Expect = 2.9e-32
Identity = 62/74 (83.78%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 3  CDGDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELIKA 62
          CDGDCRPLGFLLGLPFAFLSLLLSI+GV++WIVGL+L+CICPCCLC+TV+VE+A+ LIKA
Sbjct: 2  CDGDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKA 61

Query: 63 PIHVMEWFTSQIPC 77
          PIHVMEWF S+IPC
Sbjct: 62 PIHVMEWFMSKIPC 75

[Close]

BLAST of MS006350 vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 2.3e-21
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 0


Query: 5  GDCRPLGFLLGLPFAFLSLLLSIVGVLVWIVGLMLTCICPCCLCLTVIVELALELIKAPI 64
          GDCRPLGFL+GLPFA ++L+L++VG ++WI+G +L+C+CPCC C   +   A++LIK PI
Sbjct: 2  GDCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPI 61

Query: 65 HVMEWFTSQIPC 77
           V+ WFT  IPC
Sbjct: 62 KVLRWFTHSIPC 73

The following BLAST results are available for this feature:

BLAST of MS006350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147895.1	4.9e-34	100.00	uncharacterized protein LOC111016720 [Momordica charantia]	[more]
XP_034702088.1	2.1e-32	92.11	signaling peptide TAXIMIN 1 [Vitis riparia] >RVW46767.1 hypothetical protein CK2...	[more]
XP_002279581.1	2.7e-32	90.79	PREDICTED: uncharacterized protein LOC100260766 [Vitis vinifera] >CBI21952.3 unn...	[more]
OVA14505.1	1.3e-31	90.67	hypothetical protein BVC80_1037g53 [Macleaya cordata]	[more]
XP_024987348.1	1.8e-31	93.51	uncharacterized protein LOC112522459 [Cynara cardunculus var. scolymus]	[more]

BLAST of MS006350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82275	4.1e-31	83.78	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]
Q1G309	3.2e-20	56.94	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]

BLAST of MS006350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1E5	2.4e-34	100.00	uncharacterized protein LOC111016720 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A438JK03	1.0e-32	92.11	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_015458 PE=4 SV=1	[more]
E0CTN6	1.3e-32	90.79	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g02490 PE=4 SV=...	[more]
A0A200QVP3	6.5e-32	90.67	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1037g53 PE=4 SV=1	[more]
A0A2G9GM78	2.5e-31	84.21	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21067 P...	[more]

BLAST of MS006350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31090.1	2.9e-32	83.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20562.1	2.3e-21	56.94	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834:SF2	SIGNALING PEPTIDE TAXIMIN 1	coord: 1..76
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006350.1	MS006350.1	mRNA