MS006330 (gene) Bitter gourd (TR) v1

Overview
NameMS006330
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold123_1: 136324 .. 136494 (+)
RNA-Seq ExpressionMS006330
SyntenyMS006330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAATTTCTCGAAATCGACTCTCTTGTTTTCTCCAAATATGCATAAAGACAAGCAATTGTTTCTTCAATCTTTACTTGGTGTTCGCTTGGTTCAAGATTTTGGGAATTACCTTGGCCTGCCTTCTTCATTTACTTGGCGAAAAGGAAAGGATTTGTCTTATTTAAAGGAT

mRNA sequence

ATTAATTTCTCGAAATCGACTCTCTTGTTTTCTCCAAATATGCATAAAGACAAGCAATTGTTTCTTCAATCTTTACTTGGTGTTCGCTTGGTTCAAGATTTTGGGAATTACCTTGGCCTGCCTTCTTCATTTACTTGGCGAAAAGGAAAGGATTTGTCTTATTTAAAGGAT

Coding sequence (CDS)

ATTAATTTCTCGAAATCGACTCTCTTGTTTTCTCCAAATATGCATAAAGACAAGCAATTGTTTCTTCAATCTTTACTTGGTGTTCGCTTGGTTCAAGATTTTGGGAATTACCTTGGCCTGCCTTCTTCATTTACTTGGCGAAAAGGAAAGGATTTGTCTTATTTAAAGGAT

Protein sequence

INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD
Homology
BLAST of MS006330 vs. NCBI nr
Match: XP_022143493.1 (uncharacterized protein LOC111013370 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1   INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD 58
           INF+KS L+FSPN+H  +Q FL SLL V LV DFGNY GLPSSF+ RKG+D  +LKD
Sbjct: 169 INFAKSALIFSPNVHILRQQFLPSLLDVVLVNDFGNYFGLPSSFSRRKGQDWRFLKD 225

BLAST of MS006330 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 1   INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGK 51
           INFSKS LLFSPN+H ++Q +LQ +L V+LV  FGNYLGLPS FT R+G+
Sbjct: 876 INFSKSALLFSPNVHPERQQYLQCILNVKLVSHFGNYLGLPSHFTRRRGE 925

BLAST of MS006330 vs. NCBI nr
Match: XP_024160415.1 (uncharacterized protein LOC112167601 [Rosa chinensis])

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-04
Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 0

Query: 1   INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD 58
           +NF+KS+++FS N+H D Q ++ SLLGV +V+    YLGLP+    +K     Y+K+
Sbjct: 110 VNFAKSSVVFSKNVHIDLQNYISSLLGVEVVESHAKYLGLPTYVGRKKTSTFQYIKE 166

BLAST of MS006330 vs. NCBI nr
Match: XP_030479385.1 (uncharacterized protein LOC115696632 [Cannabis sativa])

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-04
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 0

Query: 1   INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD 58
           +N+SKS+L FSPN +++ ++ + S+LG+ +   F  YLGLP +F   K +  +YLKD
Sbjct: 440 VNYSKSSLFFSPNTNENIKIHITSVLGIPIRNSFEKYLGLPQTFGRTKKEVFNYLKD 496

BLAST of MS006330 vs. NCBI nr
Match: GEU97436.1 (reverse transcriptase [Tanacetum cinerariifolium])

HSP 1 Score: 53.1 bits (126), Expect = 8.9e-04
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 1   INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYL 56
           INFSKS ++FSPN   ++Q+ L S LGVRL++    YLGLPS     KG+ LS +
Sbjct: 77  INFSKSEVMFSPNTPMNEQIELCSRLGVRLMKQCSRYLGLPSIHRRNKGELLSLI 131

BLAST of MS006330 vs. ExPASy TrEMBL
Match: A0A6J1CQU9 (uncharacterized protein LOC111013370 OS=Momordica charantia OX=3673 GN=LOC111013370 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.6e-12
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 1   INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD 58
           INF+KS L+FSPN+H  +Q FL SLL V LV DFGNY GLPSSF+ RKG+D  +LKD
Sbjct: 169 INFAKSALIFSPNVHILRQQFLPSLLDVVLVNDFGNYFGLPSSFSRRKGQDWRFLKD 225

BLAST of MS006330 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.3e-10
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 0

Query: 1   INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGK 51
           INFSKS LLFSPN+H ++Q +LQ +L V+LV  FGNYLGLPS FT R+G+
Sbjct: 876 INFSKSALLFSPNVHPERQQYLQCILNVKLVSHFGNYLGLPSHFTRRRGE 925

BLAST of MS006330 vs. ExPASy TrEMBL
Match: A0A5B7AER2 (Reverse transcriptase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_022934 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.6e-04
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 1   INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD 58
           INF KS+L FSPN+ +DK+  ++ +LGV L      YLGLPS+    K +  +++KD
Sbjct: 295 INFDKSSLSFSPNVPEDKREVIKQILGVSLCSIHNKYLGLPSTIGRSKMQPFNFIKD 351

BLAST of MS006330 vs. ExPASy TrEMBL
Match: A0A803PYQ3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.6e-04
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 0

Query: 1    INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD 58
            +NFSKS L FSPN  ++ Q  + ++LG+ +   F  YLGLP +F   K +  +Y+KD
Sbjct: 1431 VNFSKSALFFSPNTTEEIQTNVAAILGIPVSDTFDKYLGLPQTFGRSKKEAFNYIKD 1487

BLAST of MS006330 vs. ExPASy TrEMBL
Match: A0A803NNJ1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 7.4e-04
Identity = 24/57 (42.11%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 1   INFSKSTLLFSPNMHKDKQLFLQSLLGVRLVQDFGNYLGLPSSFTWRKGKDLSYLKD 58
           +N++KS+L FSPN  +D +  + S LG+ +   F  YLGLP SF   K +  +YL D
Sbjct: 596 VNYNKSSLFFSPNTDEDTKYHITSTLGIPVRNSFEKYLGLPQSFGRTKKEIFNYLSD 652

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022143493.12.0e-1166.67uncharacterized protein LOC111013370 [Momordica charantia][more]
XP_022158377.11.1e-0966.00uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_024160415.11.8e-0442.11uncharacterized protein LOC112167601 [Rosa chinensis][more]
XP_030479385.13.1e-0442.11uncharacterized protein LOC115696632 [Cannabis sativa][more]
GEU97436.18.9e-0450.91reverse transcriptase [Tanacetum cinerariifolium][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CQU99.6e-1266.67uncharacterized protein LOC111013370 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DX305.3e-1066.00uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5B7AER25.6e-0443.86Reverse transcriptase domain-containing protein OS=Davidia involucrata OX=16924 ... [more]
A0A803PYQ35.6e-0442.11Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803NNJ17.4e-0442.11Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006330.1MS006330.1mRNA