MS006240 (gene) Bitter gourd (TR) v1

Overview
NameMS006240
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionWD repeat-containing protein 91-like protein
Locationscaffold96: 1450609 .. 1451148 (-)
RNA-Seq ExpressionMS006240
SyntenyMS006240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGCCATGGAGTTTGGAGAGCTGAAGAGGAATTTTGAGGCTTTGAAGGATCTTGTTGAAAAGCAGGAGAGCAGAGTGCAGTACCATGAGAGCAGAGCCCAGAACATAACTATGGCCTACCTTATCTGGGGGCGGTTGTTCTTCTTTGCTATCTCTCAGACTTCTTCGTCCCTCCTCAAGTGTATTGATTGGTGGATGGTTTTGGGTTTGAGTGTTTCGTGTGCCTTCGTCTACTTTCTGTTTTTCCTGGAGGCTGTCACCATGTTATATCGGGTTCAGCACCAGATGGACATAATTTGCAAGGAACAGGCAGAAATTTGCCAGCAGATTTTGGTGGCCAGAAGCCAATTAGATGATGTGGATCTGGCAATGGAGGCTGGAGATTCAAGTGATGGGTTCCAGTTCAGTTTCCACGTGAAGTTACTTGAGTATGGTGCATTTAGAATTGTGGAGAGGAAATTTTACATATGCGCCACTGTCTCTGCTCTGCTTGCTGTTACTGCTATTGAACTATACGCCTGTAAGTTCTTGTTATGCAAC

mRNA sequence

ATAGCCATGGAGTTTGGAGAGCTGAAGAGGAATTTTGAGGCTTTGAAGGATCTTGTTGAAAAGCAGGAGAGCAGAGTGCAGTACCATGAGAGCAGAGCCCAGAACATAACTATGGCCTACCTTATCTGGGGGCGGTTGTTCTTCTTTGCTATCTCTCAGACTTCTTCGTCCCTCCTCAAGTGTATTGATTGGTGGATGGTTTTGGGTTTGAGTGTTTCGTGTGCCTTCGTCTACTTTCTGTTTTTCCTGGAGGCTGTCACCATGTTATATCGGGTTCAGCACCAGATGGACATAATTTGCAAGGAACAGGCAGAAATTTGCCAGCAGATTTTGGTGGCCAGAAGCCAATTAGATGATGTGGATCTGGCAATGGAGGCTGGAGATTCAAGTGATGGGTTCCAGTTCAGTTTCCACGTGAAGTTACTTGAGTATGGTGCATTTAGAATTGTGGAGAGGAAATTTTACATATGCGCCACTGTCTCTGCTCTGCTTGCTGTTACTGCTATTGAACTATACGCCTGTAAGTTCTTGTTATGCAAC

Coding sequence (CDS)

ATAGCCATGGAGTTTGGAGAGCTGAAGAGGAATTTTGAGGCTTTGAAGGATCTTGTTGAAAAGCAGGAGAGCAGAGTGCAGTACCATGAGAGCAGAGCCCAGAACATAACTATGGCCTACCTTATCTGGGGGCGGTTGTTCTTCTTTGCTATCTCTCAGACTTCTTCGTCCCTCCTCAAGTGTATTGATTGGTGGATGGTTTTGGGTTTGAGTGTTTCGTGTGCCTTCGTCTACTTTCTGTTTTTCCTGGAGGCTGTCACCATGTTATATCGGGTTCAGCACCAGATGGACATAATTTGCAAGGAACAGGCAGAAATTTGCCAGCAGATTTTGGTGGCCAGAAGCCAATTAGATGATGTGGATCTGGCAATGGAGGCTGGAGATTCAAGTGATGGGTTCCAGTTCAGTTTCCACGTGAAGTTACTTGAGTATGGTGCATTTAGAATTGTGGAGAGGAAATTTTACATATGCGCCACTGTCTCTGCTCTGCTTGCTGTTACTGCTATTGAACTATACGCCTGTAAGTTCTTGTTATGCAAC

Protein sequence

IAMEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCIDWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDLAMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACKFLLCN
Homology
BLAST of MS006240 vs. NCBI nr
Match: XP_022157130.1 (uncharacterized protein LOC111023927 [Momordica charantia])

HSP 1 Score: 339.0 bits (868), Expect = 2.6e-89
Identity = 174/178 (97.75%), Postives = 176/178 (98.88%), Query Frame = 0

Query: 3   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 62
           MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI
Sbjct: 1   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 60

Query: 63  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 122
           DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL
Sbjct: 61  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 120

Query: 123 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACKFLLCN 181
           AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYAC +L C+
Sbjct: 121 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYCD 178

BLAST of MS006240 vs. NCBI nr
Match: XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])

HSP 1 Score: 212.6 bits (540), Expect = 2.8e-51
Identity = 113/178 (63.48%), Postives = 139/178 (78.09%), Query Frame = 0

Query: 3   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 62
           M  GEL+R FE LKD+ EKQESRV+Y+E++ QNI   YLI+ RLFFF ISQTSSS   C 
Sbjct: 1   MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSS-FNCK 60

Query: 63  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 122
           DWW++L LS+ C+F+YFL FL+AV ML+R Q+Q+DIICKE  E+ QQILV+++Q DDV L
Sbjct: 61  DWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQ-DDVGL 120

Query: 123 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACKFLLCN 181
           +ME G+SS GF+F FH K+L    FRIV RK YI  TVSALLAVTAIELY  K++LCN
Sbjct: 121 SMETGESSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

BLAST of MS006240 vs. NCBI nr
Match: XP_022157176.1 (uncharacterized protein LOC111023953 isoform X2 [Momordica charantia])

HSP 1 Score: 211.5 bits (537), Expect = 6.2e-51
Identity = 114/178 (64.04%), Postives = 135/178 (75.84%), Query Frame = 0

Query: 3   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 62
           M  GEL+R F  LKD+ EKQESRV+YHE++ Q I   YLI  RLFFF ISQTSSS  KC 
Sbjct: 1   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSSS--KCH 60

Query: 63  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 122
           DWW++L LS+ C+FVYFL FL+A T LY+ + Q+D+ICKE  E+CQQILVA++Q DDVDL
Sbjct: 61  DWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQ-DDVDL 120

Query: 123 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACKFLLCN 181
           AME GD SDGF+F FH K+L    FR V RK YI  TV AL+AVTAIELY  K+LLCN
Sbjct: 121 AMEGGDFSDGFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175

BLAST of MS006240 vs. NCBI nr
Match: XP_022157172.1 (uncharacterized protein LOC111023951 [Momordica charantia])

HSP 1 Score: 198.7 bits (504), Expect = 4.1e-47
Identity = 115/175 (65.71%), Postives = 139/175 (79.43%), Query Frame = 0

Query: 3   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 62
           M+   LKR+FE LK L EKQE  ++++ESRAQNITM YLIW R FFFA+SQTSS  LKCI
Sbjct: 1   MKLRVLKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQTSSP-LKCI 60

Query: 63  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 122
           DW +VLGLS+ C+FVYFL FLEAVTMLYR Q+QMD+ICKEQ++ICQQIL A +Q DD   
Sbjct: 61  DWRVVLGLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQ-DDGGS 120

Query: 123 AMEAGDSSDG--FQFSFHVK-LLEYG-AFRIVERKFYICATVSALLAVTAIELYA 174
           AMEAGD SDG  F FSFH++  L Y  +FRI ++K YI A +S+L+AVTA+ELYA
Sbjct: 121 AMEAGDLSDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALELYA 173

BLAST of MS006240 vs. NCBI nr
Match: KAA0042579.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05983.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 1.5e-41
Identity = 98/182 (53.85%), Postives = 129/182 (70.88%), Query Frame = 0

Query: 1   IAMEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLK 60
           I  + G+L+RNF  LKD+ + QE+ ++Y E++ QN+ + YL WGRLFFF +S +     K
Sbjct: 43  IHFQLGDLRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGVSFS----FK 102

Query: 61  CIDWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDV 120
           C DWW++L L++   F YFL F++AV ML R   Q+DII KE AEICQQILVA++Q D+V
Sbjct: 103 CKDWWVILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQ-DNV 162

Query: 121 DLAMEAGDSSDGFQFSFHVKLLEYGAFRIVE--RKFYICATVSALLAVTAIELYACKFLL 180
            L+MEAG+ SDGF+ SFH ++     FR+VE  RK YI   V  LLA+TAIELYACK LL
Sbjct: 163 GLSMEAGEDSDGFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLL 219

BLAST of MS006240 vs. ExPASy TrEMBL
Match: A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 174/178 (97.75%), Postives = 176/178 (98.88%), Query Frame = 0

Query: 3   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 62
           MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI
Sbjct: 1   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 60

Query: 63  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 122
           DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL
Sbjct: 61  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 120

Query: 123 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACKFLLCN 181
           AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYAC +L C+
Sbjct: 121 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYCD 178

BLAST of MS006240 vs. ExPASy TrEMBL
Match: A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.3e-51
Identity = 113/178 (63.48%), Postives = 139/178 (78.09%), Query Frame = 0

Query: 3   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 62
           M  GEL+R FE LKD+ EKQESRV+Y+E++ QNI   YLI+ RLFFF ISQTSSS   C 
Sbjct: 1   MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSS-FNCK 60

Query: 63  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 122
           DWW++L LS+ C+F+YFL FL+AV ML+R Q+Q+DIICKE  E+ QQILV+++Q DDV L
Sbjct: 61  DWWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQ-DDVGL 120

Query: 123 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACKFLLCN 181
           +ME G+SS GF+F FH K+L    FRIV RK YI  TVSALLAVTAIELY  K++LCN
Sbjct: 121 SMETGESSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

BLAST of MS006240 vs. ExPASy TrEMBL
Match: A0A6J1DX74 (uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023953 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 3.0e-51
Identity = 114/178 (64.04%), Postives = 135/178 (75.84%), Query Frame = 0

Query: 3   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 62
           M  GEL+R F  LKD+ EKQESRV+YHE++ Q I   YLI  RLFFF ISQTSSS  KC 
Sbjct: 1   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSSS--KCH 60

Query: 63  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 122
           DWW++L LS+ C+FVYFL FL+A T LY+ + Q+D+ICKE  E+CQQILVA++Q DDVDL
Sbjct: 61  DWWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQ-DDVDL 120

Query: 123 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACKFLLCN 181
           AME GD SDGF+F FH K+L    FR V RK YI  TV AL+AVTAIELY  K+LLCN
Sbjct: 121 AMEGGDFSDGFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175

BLAST of MS006240 vs. ExPASy TrEMBL
Match: A0A6J1DTV6 (uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023951 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 2.0e-47
Identity = 115/175 (65.71%), Postives = 139/175 (79.43%), Query Frame = 0

Query: 3   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 62
           M+   LKR+FE LK L EKQE  ++++ESRAQNITM YLIW R FFFA+SQTSS  LKCI
Sbjct: 1   MKLRVLKRDFEELKLLAEKQEPILRFYESRAQNITMGYLIWERFFFFALSQTSSP-LKCI 60

Query: 63  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 122
           DW +VLGLS+ C+FVYFL FLEAVTMLYR Q+QMD+ICKEQ++ICQQIL A +Q DD   
Sbjct: 61  DWRVVLGLSLVCSFVYFLLFLEAVTMLYRTQNQMDMICKEQSDICQQILDAGNQ-DDGGS 120

Query: 123 AMEAGDSSDG--FQFSFHVK-LLEYG-AFRIVERKFYICATVSALLAVTAIELYA 174
           AMEAGD SDG  F FSFH++  L Y  +FRI ++K YI A +S+L+AVTA+ELYA
Sbjct: 121 AMEAGDLSDGVAFNFSFHMRTTLNYDYSFRIFQKKVYISAIISSLVAVTALELYA 173

BLAST of MS006240 vs. ExPASy TrEMBL
Match: A0A5A7TMJ1 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00790 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 7.4e-42
Identity = 98/182 (53.85%), Postives = 129/182 (70.88%), Query Frame = 0

Query: 1   IAMEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLK 60
           I  + G+L+RNF  LKD+ + QE+ ++Y E++ QN+ + YL WGRLFFF +S +     K
Sbjct: 43  IHFQLGDLRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGVSFS----FK 102

Query: 61  CIDWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDV 120
           C DWW++L L++   F YFL F++AV ML R   Q+DII KE AEICQQILVA++Q D+V
Sbjct: 103 CKDWWVILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQ-DNV 162

Query: 121 DLAMEAGDSSDGFQFSFHVKLLEYGAFRIVE--RKFYICATVSALLAVTAIELYACKFLL 180
            L+MEAG+ SDGF+ SFH ++     FR+VE  RK YI   V  LLA+TAIELYACK LL
Sbjct: 163 GLSMEAGEDSDGFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLL 219

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157130.12.6e-8997.75uncharacterized protein LOC111023927 [Momordica charantia][more]
XP_022157182.12.8e-5163.48uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... [more]
XP_022157176.16.2e-5164.04uncharacterized protein LOC111023953 isoform X2 [Momordica charantia][more]
XP_022157172.14.1e-4765.71uncharacterized protein LOC111023951 [Momordica charantia][more]
KAA0042579.11.5e-4153.85WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DS871.2e-8997.75uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DSQ01.3e-5163.48uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DX743.0e-5164.04uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DTV62.0e-4765.71uncharacterized protein LOC111023951 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7TMJ17.4e-4253.85WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 5..25
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 3..180
NoneNo IPR availablePANTHERPTHR33287:SF8SUBFAMILY NOT NAMEDcoord: 3..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006240.1MS006240.1mRNA