MS006237 (gene) Bitter gourd (TR) v1

Overview
NameMS006237
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionWD repeat-containing protein 91-like protein
Locationscaffold96: 1418491 .. 1419018 (-)
RNA-Seq ExpressionMS006237
SyntenyMS006237
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGTCATGGAACTTGGAGAGCTGAAGAGGAATTTTGGGGAGTTGAAAGTTATTAACGAGAAGCAAGAATCTAGGGTGCGTTACCATGAAACCAAAGTGCAGAACATTGTAATTGGTTATCTCATTTGGGGATGCTCCTTCTTCTTTGCTGTCTCTCAGACTTCTTCATTCCTCAAGTGCAATGATTGGTGGGTTGTTTTGGCTATGAATCTGTTGTGTGCCTTTGTCTACTTTTTGCTTTTTCTGGATGCTGTCACTATGTTATGTCGGACCCAGTACCAGCTAGACTTAATGTGCGAGGAATTAACTGAAGTTTGCCAACAAATTTTGGTAGTAAAAAACGAAGGTGATGGTTTAATAGAGGCTGGAGAATCTTGTGATGCATTTGATTTCAGTTTCCATGAGAAGATACTCATGCTTGATCCTTGTAGAATTGTTGGGAGGAAAGTTTACATGTACTTCACTGTCTGTGCTTTGCTTGCTGTTACTGCTATTGAATTATATGGTTGCAAGTATTTGTTGTGCAAC

mRNA sequence

ATAGTCATGGAACTTGGAGAGCTGAAGAGGAATTTTGGGGAGTTGAAAGTTATTAACGAGAAGCAAGAATCTAGGGTGCGTTACCATGAAACCAAAGTGCAGAACATTGTAATTGGTTATCTCATTTGGGGATGCTCCTTCTTCTTTGCTGTCTCTCAGACTTCTTCATTCCTCAAGTGCAATGATTGGTGGGTTGTTTTGGCTATGAATCTGTTGTGTGCCTTTGTCTACTTTTTGCTTTTTCTGGATGCTGTCACTATGTTATGTCGGACCCAGTACCAGCTAGACTTAATGTGCGAGGAATTAACTGAAGTTTGCCAACAAATTTTGGTAGTAAAAAACGAAGGTGATGGTTTAATAGAGGCTGGAGAATCTTGTGATGCATTTGATTTCAGTTTCCATGAGAAGATACTCATGCTTGATCCTTGTAGAATTGTTGGGAGGAAAGTTTACATGTACTTCACTGTCTGTGCTTTGCTTGCTGTTACTGCTATTGAATTATATGGTTGCAAGTATTTGTTGTGCAAC

Coding sequence (CDS)

ATAGTCATGGAACTTGGAGAGCTGAAGAGGAATTTTGGGGAGTTGAAAGTTATTAACGAGAAGCAAGAATCTAGGGTGCGTTACCATGAAACCAAAGTGCAGAACATTGTAATTGGTTATCTCATTTGGGGATGCTCCTTCTTCTTTGCTGTCTCTCAGACTTCTTCATTCCTCAAGTGCAATGATTGGTGGGTTGTTTTGGCTATGAATCTGTTGTGTGCCTTTGTCTACTTTTTGCTTTTTCTGGATGCTGTCACTATGTTATGTCGGACCCAGTACCAGCTAGACTTAATGTGCGAGGAATTAACTGAAGTTTGCCAACAAATTTTGGTAGTAAAAAACGAAGGTGATGGTTTAATAGAGGCTGGAGAATCTTGTGATGCATTTGATTTCAGTTTCCATGAGAAGATACTCATGCTTGATCCTTGTAGAATTGTTGGGAGGAAAGTTTACATGTACTTCACTGTCTGTGCTTTGCTTGCTGTTACTGCTATTGAATTATATGGTTGCAAGTATTTGTTGTGCAAC

Protein sequence

IVMELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQTSSFLKCNDWWVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEGDGLIEAGESCDAFDFSFHEKILMLDPCRIVGRKVYMYFTVCALLAVTAIELYGCKYLLCN
Homology
BLAST of MS006237 vs. NCBI nr
Match: XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])

HSP 1 Score: 238.0 bits (606), Expect = 6.0e-59
Identity = 126/176 (71.59%), Postives = 145/176 (82.39%), Query Frame = 0

Query: 3   MELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQTSSFLKCND 62
           M LGEL+R F ELK INEKQESRVRY+ETKVQNIV GYLI+   FFF +SQTSS   C D
Sbjct: 1   MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKD 60

Query: 63  WWVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEGD-GL-I 122
           WWV+LA++LLC+F+YFLLFLDAV ML RTQYQLD++C+EL E+ QQILV KN+ D GL +
Sbjct: 61  WWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSM 120

Query: 123 EAGESCDAFDFSFHEKILMLDPCRIVGRKVYMYFTVCALLAVTAIELYGCKYLLCN 177
           E GES   F+F FHEK+LMLD  RIVGRKVY+YFTV ALLAVTAIELY  KY+LCN
Sbjct: 121 ETGESSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

BLAST of MS006237 vs. NCBI nr
Match: XP_022157176.1 (uncharacterized protein LOC111023953 isoform X2 [Momordica charantia])

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-55
Identity = 118/176 (67.05%), Postives = 141/176 (80.11%), Query Frame = 0

Query: 3   MELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQTSSFLKCND 62
           M +GEL+R FGELK INEKQESRVRYHE K Q IV GYLI    FFF +SQTSS  KC+D
Sbjct: 1   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSS-SKCHD 60

Query: 63  WWVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEGDG--LI 122
           WWV+L+++LLC+FVYFLLFLDA T L +T+ QLD++C+EL EVCQQILV +N+ D    +
Sbjct: 61  WWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAM 120

Query: 123 EAGESCDAFDFSFHEKILMLDPCRIVGRKVYMYFTVCALLAVTAIELYGCKYLLCN 177
           E G+  D F+F FHEK+L+LD  R VGRKVY+YFTVCAL+AVTAIELY  KYLLCN
Sbjct: 121 EGGDFSDGFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175

BLAST of MS006237 vs. NCBI nr
Match: KAG7016840.1 (hypothetical protein SDJN02_21951, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.0 bits (567), Expect = 2.0e-54
Identity = 116/176 (65.91%), Postives = 137/176 (77.84%), Query Frame = 0

Query: 1   IVMELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQTSSFLKC 60
           IVM  GELKR   EL  +NEKQE++V YH+ KVQNIV GYLIW   FF+ +SQ  SF KC
Sbjct: 34  IVMAHGELKRRIKELIDVNEKQETKVCYHKNKVQNIVFGYLIWVRLFFYGISQALSF-KC 93

Query: 61  NDWWVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEGD-GL 120
           N+WWV+LA++LL  F+YFLLFLDA+TML R QYQLD++C+EL E CQQ L+ KN  D  L
Sbjct: 94  NNWWVILALSLLWNFIYFLLFLDAMTMLHRAQYQLDIICKELIEFCQQNLIPKNRDDMDL 153

Query: 121 IEAGESCDAFDFSFHEKILMLDPCRIVGRKVYMYFTVCALLAVTAIELYGCKYLLC 176
           +EAGESCD F+F FH+K+LMLD   IVGR VY+YF VCALLAV AIELY  KYLLC
Sbjct: 154 VEAGESCDRFEFGFHKKMLMLDHSTIVGRNVYIYFIVCALLAVAAIELYAYKYLLC 208

BLAST of MS006237 vs. NCBI nr
Match: KAG6579338.1 (hypothetical protein SDJN03_23786, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.1 bits (549), Expect = 2.5e-52
Identity = 113/174 (64.94%), Postives = 134/174 (77.01%), Query Frame = 0

Query: 3   MELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQTSSFLKCND 62
           M  GELKR F EL  +NEKQE++V YH+ KVQNIV GYLIW   F + +SQ  SF KCN+
Sbjct: 1   MAHGELKRRFKELIDVNEKQETKVCYHKNKVQNIVFGYLIWVRLFIYGISQALSF-KCNN 60

Query: 63  WWVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEGD-GLIE 122
           WWV+LA++LL  F+YFLLFLDA+TML R QYQLD++C+EL E CQQ L+ KN  D  L+E
Sbjct: 61  WWVILALSLLWNFIYFLLFLDAMTMLHRAQYQLDIICKELIEFCQQNLIPKNRDDMDLVE 120

Query: 123 AGESCDAFDFSFHEKILMLDPCRIVGRKVYMYFTVCALLAVTAIELYGCKYLLC 176
           AGES D F+F FH+K+LMLD   IVGR VY+YF VCALLAV AIELY  KYLLC
Sbjct: 121 AGESRDGFEFGFHKKMLMLDHSTIVGRNVYIYFIVCALLAVAAIELYAYKYLLC 173

BLAST of MS006237 vs. NCBI nr
Match: XP_022157130.1 (uncharacterized protein LOC111023927 [Momordica charantia])

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-49
Identity = 108/178 (60.67%), Postives = 135/178 (75.84%), Query Frame = 0

Query: 3   MELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQT-SSFLKCN 62
           ME GELKRNF  LK + EKQESRV+YHE++ QNI + YLIWG  FFFA+SQT SS LKC 
Sbjct: 1   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 60

Query: 63  DWWVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEGDGL-- 122
           DWW+VL +++ CAFVYFL FL+AVTML R Q+Q+D++C+E  E+CQQILV +++ D +  
Sbjct: 61  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 120

Query: 123 -IEAGESCDAFDFSFHEKILMLDPCRIVGRKVYMYFTVCALLAVTAIELYGCKYLLCN 177
            +EAG+S D F FSFH K+L     RIV RK Y+  TV ALLAVTAIELY C +L C+
Sbjct: 121 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYCD 178

BLAST of MS006237 vs. ExPASy TrEMBL
Match: A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.9e-59
Identity = 126/176 (71.59%), Postives = 145/176 (82.39%), Query Frame = 0

Query: 3   MELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQTSSFLKCND 62
           M LGEL+R F ELK INEKQESRVRY+ETKVQNIV GYLI+   FFF +SQTSS   C D
Sbjct: 1   MALGELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKD 60

Query: 63  WWVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEGD-GL-I 122
           WWV+LA++LLC+F+YFLLFLDAV ML RTQYQLD++C+EL E+ QQILV KN+ D GL +
Sbjct: 61  WWVILALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSM 120

Query: 123 EAGESCDAFDFSFHEKILMLDPCRIVGRKVYMYFTVCALLAVTAIELYGCKYLLCN 177
           E GES   F+F FHEK+LMLD  RIVGRKVY+YFTV ALLAVTAIELY  KY+LCN
Sbjct: 121 ETGESSGGFEFGFHEKMLMLDHFRIVGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

BLAST of MS006237 vs. ExPASy TrEMBL
Match: A0A6J1DX74 (uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023953 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 8.8e-56
Identity = 118/176 (67.05%), Postives = 141/176 (80.11%), Query Frame = 0

Query: 3   MELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQTSSFLKCND 62
           M +GEL+R FGELK INEKQESRVRYHE K Q IV GYLI    FFF +SQTSS  KC+D
Sbjct: 1   MAVGELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSS-SKCHD 60

Query: 63  WWVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEGDG--LI 122
           WWV+L+++LLC+FVYFLLFLDA T L +T+ QLD++C+EL EVCQQILV +N+ D    +
Sbjct: 61  WWVILSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAM 120

Query: 123 EAGESCDAFDFSFHEKILMLDPCRIVGRKVYMYFTVCALLAVTAIELYGCKYLLCN 177
           E G+  D F+F FHEK+L+LD  R VGRKVY+YFTVCAL+AVTAIELY  KYLLCN
Sbjct: 121 EGGDFSDGFEFGFHEKMLVLDHFRFVGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175

BLAST of MS006237 vs. ExPASy TrEMBL
Match: A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 5.5e-50
Identity = 108/178 (60.67%), Postives = 135/178 (75.84%), Query Frame = 0

Query: 3   MELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQT-SSFLKCN 62
           ME GELKRNF  LK + EKQESRV+YHE++ QNI + YLIWG  FFFA+SQT SS LKC 
Sbjct: 1   MEFGELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCI 60

Query: 63  DWWVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEGDGL-- 122
           DWW+VL +++ CAFVYFL FL+AVTML R Q+Q+D++C+E  E+CQQILV +++ D +  
Sbjct: 61  DWWMVLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDL 120

Query: 123 -IEAGESCDAFDFSFHEKILMLDPCRIVGRKVYMYFTVCALLAVTAIELYGCKYLLCN 177
            +EAG+S D F FSFH K+L     RIV RK Y+  TV ALLAVTAIELY C +L C+
Sbjct: 121 AMEAGDSSDGFQFSFHVKLLEYGAFRIVERKFYICATVSALLAVTAIELYACSWLYCD 178

BLAST of MS006237 vs. ExPASy TrEMBL
Match: A0A5A7TMJ1 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00790 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.2e-47
Identity = 107/180 (59.44%), Postives = 134/180 (74.44%), Query Frame = 0

Query: 1   IVMELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQTSSFLKC 60
           I  +LG+L+RNF  LK IN+ QE+ +RY ETK+QN+V+GYL WG  FFF VS +    KC
Sbjct: 43  IHFQLGDLRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGVSFS---FKC 102

Query: 61  NDWWVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEGD-GL 120
            DWWV+LA+ L   F YFLLF+DAV ML RT  QLD++ +EL E+CQQILV +N+ + GL
Sbjct: 103 KDWWVILALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQDNVGL 162

Query: 121 -IEAGESCDAFDFSFHEKILMLDPCRIV--GRKVYMYFTVCALLAVTAIELYGCKYLLCN 177
            +EAGE  D F+ SFHE++ MLD  R+V  GRKVY+YF VC LLA+TAIELY CK LLCN
Sbjct: 163 SMEAGEDSDGFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLLCN 219

BLAST of MS006237 vs. ExPASy TrEMBL
Match: A0A0A0KJZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 8.2e-46
Identity = 102/177 (57.63%), Postives = 129/177 (72.88%), Query Frame = 0

Query: 4   ELGELKRNFGELKVINEKQESRVRYHETKVQNIVIGYLIWGCSFFFAVSQTSSFLKCNDW 63
           +LG+L++NF  LK IN+ QE+ +RY ETK+QNIV+GYL WG  FFF  S +    KC DW
Sbjct: 80  QLGDLRKNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGFSFS---FKCKDW 139

Query: 64  WVVLAMNLLCAFVYFLLFLDAVTMLCRTQYQLDLMCEELTEVCQQILVVKNEG--DGLIE 123
           WVVL++ LL  F+Y LLF+DAV ML RT  QL ++ +ELTE+CQQILV +N+   D  +E
Sbjct: 140 WVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQDTVDLSME 199

Query: 124 AGESCDAFDFSFHEKILMLDPCRIV--GRKVYMYFTVCALLAVTAIELYGCKYLLCN 177
            GE CD F+ SFHE++ MLD   +V  GRK Y+YF VCALL +TAIELY CK LLCN
Sbjct: 200 GGECCDGFELSFHERMFMLDQFSVVENGRKGYIYFIVCALLVITAIELYACKRLLCN 253

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022157182.16.0e-5971.59uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha... [more]
XP_022157176.11.8e-5567.05uncharacterized protein LOC111023953 isoform X2 [Momordica charantia][more]
KAG7016840.12.0e-5465.91hypothetical protein SDJN02_21951, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6579338.12.5e-5264.94hypothetical protein SDJN03_23786, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022157130.11.1e-4960.67uncharacterized protein LOC111023927 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DSQ02.9e-5971.59uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DX748.8e-5667.05uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DS875.5e-5060.67uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5A7TMJ11.2e-4759.44WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194... [more]
A0A0A0KJZ38.2e-4657.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33287OS03G0453550 PROTEINcoord: 3..176
NoneNo IPR availablePANTHERPTHR33287:SF8SUBFAMILY NOT NAMEDcoord: 3..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006237.1MS006237.1mRNA