MS006162 (gene) Bitter gourd (TR) v1

Overview
NameMS006162
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPre-mRNA-splicing factor SF2
Locationscaffold96: 785285 .. 785587 (-)
RNA-Seq ExpressionMS006162
SyntenyMS006162
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACGTAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTATGGGTATTATTTTTTTAAATGGAGATTCTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTAGATTACCTTTGGAGCTTCTTGGAGCAAATGAGCAATGGAGTTGTGGAGCAGGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCTTTATTTTGGGAG

mRNA sequence

ATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACGTAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTATGGGTATTATTTTTTTAAATGGAGATTCTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTAGATTACCTTTGGAGCTTCTTGGAGCAAATGAGCAATGGAGTTGTGGAGCAGGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCTTTATTTTGGGAG

Coding sequence (CDS)

ATGACAAGCGCTTGGACAAATATGAGCATTGCAATCATACGTAGGGATATAGAGAGGGAATGGGAGAATCATTGTGGAGTTATGGGTATTATTTTTTTAAATGGAGATTCTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAAATTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTAGATTACCTTTGGAGCTTCTTGGAGCAAATGAGCAATGGAGTTGTGGAGCAGGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCTTTATTTTGGGAG

Protein sequence

MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFWE
Homology
[Close]
BLAST of MS006162 vs. NCBI nr
Match: KGN49818.1 (hypothetical protein Csa_000599 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 9.5e-41
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYF 60
           MTSA TNMSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYF
Sbjct: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60

Query: 61  NIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFWE 102
           NI +PLE LGANEQW+CGA LTSRIALLVCFIV+ SALF E
Sbjct: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFGE 101

[Close]
BLAST of MS006162 vs. NCBI nr
Match: TYK05915.1 (Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-32
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 8  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLE 67
          MSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYFNI +PLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 LLGANEQWSCGAGLTSRIALL 89
           LGANEQW+CGA LTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]
BLAST of MS006162 vs. NCBI nr
Match: KAA0042513.1 (Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-32
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 8  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLE 67
          MSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYFNI +PLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 LLGANEQWSCGAGLTSRIALL 89
           LGANEQW+CGA LTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]
BLAST of MS006162 vs. NCBI nr
Match: PON83659.1 (hypothetical protein TorRG33x02_204650, partial [Trema orientale])

HSP 1 Score: 104.0 bits (258), Expect = 7.8e-19
Identity = 57/101 (56.44%), Postives = 68/101 (67.33%), Query Frame = 0 

Query: 1   MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIY 60
           M SAWTNMSIA+I RDIER+WE  CGVMG+IFL  +  + S+++ T AKILERMRR K  
Sbjct: 61  MASAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTNAKILERMRRSKFI 120

Query: 61  FNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFW 101
               L   +L      +CGA LTSRIALLVCF+V     FW
Sbjct: 121 SIYLLLWSILEQMSNGACGARLTSRIALLVCFMVLVLLYFW 161

[Close]
BLAST of MS006162 vs. NCBI nr
Match: PON71975.1 (hypothetical protein PanWU01x14_068170, partial [Parasponia andersonii])

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 0 

Query: 1   MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIY 60
           MTSAWTNMSIA+I RDIER+WE  CGVMG+IFL  +  + S+++ T AKILERMRR K  
Sbjct: 61  MTSAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTSAKILERMRRSKFI 120

Query: 61  FNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFW 101
               L   +L      + GA LT RIALLVCF+V     FW
Sbjct: 121 SIYLLLWSILEQMSNGAFGAWLTWRIALLVCFMVLVLLYFW 161

[Close]
BLAST of MS006162 vs. ExPASy TrEMBL
Match: A0A0A0KJQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138500 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.6e-41
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 1   MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYF 60
           MTSA TNMSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYF
Sbjct: 1   MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYF 60

Query: 61  NIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFWE 102
           NI +PLE LGANEQW+CGA LTSRIALLVCFIV+ SALF E
Sbjct: 61  NIIIPLEHLGANEQWNCGARLTSRIALLVCFIVYCSALFGE 101

[Close]
BLAST of MS006162 vs. ExPASy TrEMBL
Match: A0A5A7TGZ1 (Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00050 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-32
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 8  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLE 67
          MSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYFNI +PLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 LLGANEQWSCGAGLTSRIALL 89
           LGANEQW+CGA LTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]
BLAST of MS006162 vs. ExPASy TrEMBL
Match: A0A5D3C3G3 (Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00060 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-32
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 8  MSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCTAKILERMRRYKIYFNIRLPLE 67
          MSIAII RDIEREWE+HCGVMGIIF+NG +CSLSEELCTAK LERMRRYKIYFNI +PLE
Sbjct: 1  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKIYFNIIIPLE 60

Query: 68 LLGANEQWSCGAGLTSRIALL 89
           LGANEQW+CGA LTSRIALL
Sbjct: 61 HLGANEQWNCGARLTSRIALL 81

[Close]
BLAST of MS006162 vs. ExPASy TrEMBL
Match: A0A2P5EDP3 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_204650 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 57/101 (56.44%), Postives = 68/101 (67.33%), Query Frame = 0 

Query: 1   MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIY 60
           M SAWTNMSIA+I RDIER+WE  CGVMG+IFL  +  + S+++ T AKILERMRR K  
Sbjct: 61  MASAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTNAKILERMRRSKFI 120

Query: 61  FNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFW 101
               L   +L      +CGA LTSRIALLVCF+V     FW
Sbjct: 121 SIYLLLWSILEQMSNGACGARLTSRIALLVCFMVLVLLYFW 161

[Close]
BLAST of MS006162 vs. ExPASy TrEMBL
Match: A0A2P5DF99 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_068170 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 56/101 (55.45%), Postives = 67/101 (66.34%), Query Frame = 0 

Query: 1   MTSAWTNMSIAIIRRDIEREWENHCGVMGIIFLNGDSCSLSEELCT-AKILERMRRYKIY 60
           MTSAWTNMSIA+I RDIER+WE  CGVMG+IFL  +  + S+++ T AKILERMRR K  
Sbjct: 61  MTSAWTNMSIAMIHRDIERDWEIQCGVMGVIFLLLEILAHSQKIYTSAKILERMRRSKFI 120

Query: 61  FNIRLPLELLGANEQWSCGAGLTSRIALLVCFIVFGSALFW 101
               L   +L      + GA LT RIALLVCF+V     FW
Sbjct: 121 SIYLLLWSILEQMSNGAFGAWLTWRIALLVCFMVLVLLYFW 161

The following BLAST results are available for this feature:
BLAST of MS006162 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49818.19.5e-4185.15hypothetical protein Csa_000599 [Cucumis sativus][more]
TYK05915.12.1e-3286.42Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa][more]
KAA0042513.12.1e-3286.42Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa][more]
PON83659.17.8e-1956.44hypothetical protein TorRG33x02_204650, partial [Trema orientale][more]
PON71975.12.5e-1755.45hypothetical protein PanWU01x14_068170, partial [Parasponia andersonii][more]
BLAST of MS006162 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS006162 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJQ04.6e-4185.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138500 PE=4 SV=1[more]
A0A5A7TGZ11.0e-3286.42Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5D3C3G31.0e-3286.42Pre-mRNA-splicing factor SF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A2P5EDP33.8e-1956.44Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_204... [more]
A0A2P5DF991.2e-1755.45Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
BLAST of MS006162 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006162.1MS006162.1mRNA