MS006161 (gene) Bitter gourd (TR) v1

Overview
NameMS006161
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionserine/arginine-rich splicing factor SR34A
Locationscaffold96: 781844 .. 785141 (-)
RNA-Seq ExpressionMS006161
SyntenyMS006161
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATTAAAGAATATGAAATCGAAGATTTGTTCTACAAGGTATATGTTTTTTTCTTTAGCTGTTTCTTGTCATGTGGTGTCTGTGCAAAAACTTGTTATGTTCTCTTTTCATATTTTATAATTTTAATACTATTCTCAATTATTTTAAGTTTTTTAGGGAGGCACCTATGATGGTGATTTACAGAGTCATTCAAATCTGTTTTAAATTTTTATTTTGAACAGAAAATTTACATGTATTTTATGGTTCCTGTATGTTTAAGGTTAATTTTTTTTAACTTATAATTTTTACATGATTAATATTTCCTTTGGCAGTATGGTCGGATTCTGGATATTGAATTGAAGATTCCACCCCGTCCTCCATGTTATTGTTTTGTGGAGGTATTGCTACTGATTTTTAGTTTTTATTTACTTTTGGCTGCATTTGCAAAATTGTCTTTTATGACATTATGTGCTTTCGGTTGGTAGTTTGAGAGTGTTAGGGACGCCGAAGATGCAATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGGTTAAGGGTAAAAACTAAATCTTCTCTTTCCTTCATTTCCTGATTCCTATTTCTTTTCTTGATTTTTTCAGTTTTCTTATTAGGTTGAGCTTGCACATGGTGGTAGAGGTCCGTCATCAAGTGATCGTCGTAGTAGCTATGGCGGTGGTGGCGGCGGCGGCGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTCTCAAAACGATCAGAATATCGAGGTGCGGGAATATATATGATGCTGCTATTTAAGGGAGCATTCTGCCAACAAAATTGCCTATGTGAAATATTGCATTTGGTTCATATTATTTTCAATGTTCTAAAAAATTTTTTATTTCCATCACAGTTATTGTACGCGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGTGTTCGTCTTTATTGTTCAACCAAAGATTGATGTTTCCTTCTACGGGATCATGTTAATGAACTTTACTGATATAATGCTTTCAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCTCGTGACAATGAAGGTTTAATTACATACGTCTTTCACCCTGTACTGAGAATTGCTAATTTCTTTTTTATCATGTGCAAAACAGTTTCTACGGAGGAATGATTTCTCAAGCCCATGTTGCTCATTTGTTTTGTTTTACAAATTCAACTCTAGTGGATATTTCTGATCATGTTCCTAGAGTAATTATAACACACATGATGAGTAAGTATGTAAGATTTGCATCATTTATAGTTCTTACTGCTAAATATTTAATTTATGCATAAGTTCCACTGGTGACCTTAGAGCATAACGTGTTAGATGGGCGTATTTTATATTTGAAAAGTGGTCTGCTTTCTATTTAAGGTCTGCGTGCTGTGTTTATAAGAATTGGGTATGCCTCTAGAGGAATGCAAGTTAAGCTGTAAGTTTAAATTTTCTCTAAAGTTCTCCATGATTTACAATCTTGATGGATTTTGTTTTGGCTCTTCTTGGAATTCGGGGTTCTGATCTGGTTGTTTTTGAGGCCCAATTTCGTCATTTGGCACACAATGTGATATGCGGATTTGGATACTTCCCTTTGTCATTGTGTCACATGAGCTAAGAATGCCATGTAGCTTAGATTTCCGACATAGCAATTGGTAGTTCTAGGTGGTTACCCTTCCAAGATCTGGCCTTGGCCTGGAATAGCTGATGTGTGTAATTTTACTTGACTCTATAGTATGGCATGAGATAGAATATTGAGCATTTTGTAGGAAGTCTTTAATATATCTTTCAGAGAATACATTGTCTTCAGCTGGTTGATAATCAACAGAAAAAAAAAGTGGTGATATGTCTAGCTAATTCTGGGGAGAAGAGGTCGTAGGGTAACTTATTGTTATTGATGATTCATTCCCAGTTCTCAATCCAACATGAATTGCCATAACATGAGATATCACCACATACTGGTGATGTGTGTACTTTTACTCGTCTTTCTTTTATAGCATGGGATAGAATATCGAGTATTCTGTAGGGAGGGGTTTGGCTGGTAATGAATCTTCAATCTATCTTTTAGAGAATATATTGTCTTCAGCTAGTTGATAATCAACAGAAAAACTATGTGGTGATATGTCTAGCTAATTTTGGGGAGAAGAGGTCTTAGGGTAACTTCTTGTTATTGATTATTCATTCCCAGTTCTCAGTCCAACATGAATTGCCATAATTCTTGCAACTTTCGATCATCTTCATTTGATTTTTGCTGTATGGATAGTATTTTGTTGGTAACAAGTTATTCTGCTACTTAGTTGAAGAGACATATTTTCATCAATCTATACTCGAGGGTTGTATTTTGGATGAATTTAATTTTTATAATTGTGGCTTGCGACATACTGCAGAATGCAGAGGATCATTCGCACTGTAACTACTTCAAGTTACCTTTACTTTTTGTTGTGCTACTTAGTTGGAGGCACAGATTTTCCATCAATTTATACTCTACGGTTGTATTTTGAATAAATTTTATTTTTCTAATTTTGGCATGCGACATACCACAGAATGCGTATCATTTGCACTATAACTACTTCAACTTAACCTTTTTTTTTTCTCTCTTTACAAGTGCCAACAAATTTCAGAACCTGAATTTACTTCAAATTGATTTGATAGTTAGATAAATATTTACTATTTTAACTCAACATGTTCAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTGTAAGTTTCTCTAAGAGTACGTTTCATCAGAAGTCTTGTATTATTTCAATTTGACAACTAATATTTTTTATGTAATTTAGATTCGAAAACTTGATGATACTGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTACCTTAACCTCTATTCTCTATTCTCTTTTCTAGTTTTTTTATGTGATAATTTCGTGGTAACATTTGGTTGCAGGTGAAGAAGTATGATGGAAGTCCCACTAGGAGTCGAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGTAGAAGTCGTAGTCAAAGCCGAAGCCGAAGTGCTAGACGAAATAGGAGGTACCAACTTTTCTGTTTTACTATTATCCCTGTCATGGCCTCTTATTATGTGTCGTAATGTTTTGTTGTACCATGCAGCAAATCAGTAGAGCGATCTGTTTCTAGATCAGTTTCAAGGTCAAGATCTCCATCCCCCGTTAAATCTTCTAGG

mRNA sequence

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATTAAAGAATATGAAATCGAAGATTTGTTCTACAAGTATGGTCGGATTCTGGATATTGAATTGAAGATTCCACCCCGTCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGACGCCGAAGATGCAATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGGTTAAGGGTTGAGCTTGCACATGGTGGTAGAGGTCCGTCATCAAGTGATCGTCGTAGTAGCTATGGCGGTGGTGGCGGCGGCGGCGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTCTCAAAACGATCAGAATATCGAGTTATTGTACGCGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCTCGTGACAATGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTATTCGAAAACTTGATGATACTGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAGAAGTATGATGGAAGTCCCACTAGGAGTCGAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGTAGAAGTCGTAGTCAAAGCCGAAGCCGAAGTGCTAGACGAAATAGGAGCAAATCAGTAGAGCGATCTGTTTCTAGATCAGTTTCAAGGTCAAGATCTCCATCCCCCGTTAAATCTTCTAGG

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATTAAAGAATATGAAATCGAAGATTTGTTCTACAAGTATGGTCGGATTCTGGATATTGAATTGAAGATTCCACCCCGTCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGACGCCGAAGATGCAATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGGTTAAGGGTTGAGCTTGCACATGGTGGTAGAGGTCCGTCATCAAGTGATCGTCGTAGTAGCTATGGCGGTGGTGGCGGCGGCGGCGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGACGTTTTGGTGTCTCAAAACGATCAGAATATCGAGTTATTGTACGCGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCTCGTGACAATGAAGGGACGTTTGGGATTGTTGATTATACTAACTATGATGACATGAAATATGCTATTCGAAAACTTGATGATACTGAATTCAAAAATCCTTGGGCAAGAGCATACATTCGGGTGAAGAAGTATGATGGAAGTCCCACTAGGAGTCGAAGCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGTAGAAGTCGTAGTCAAAGCCGAAGCCGAAGTGCTAGACGAAATAGGAGCAAATCAGTAGAGCGATCTGTTTCTAGATCAGTTTCAAGGTCAAGATCTCCATCCCCCGTTAAATCTTCTAGG

Protein sequence

MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSQSRSRSARRNRSKSVERSVSRSVSRSRSPSPVKSSR
Homology
BLAST of MS006161 vs. NCBI nr
Match: XP_022137780.1 (serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137782.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137783.1 serine/arginine-rich splicing factor SR34A [Momordica charantia])

HSP 1 Score: 463.4 bits (1191), Expect = 1.3e-126
Identity = 258/261 (98.85%), Postives = 258/261 (98.85%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY GGGGGGGGGGGGGGGGGGGGRFGV
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY-GGGGGGGGGGGGGGGGGGGGRFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI
Sbjct: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSQSRSRSARRNRSKSV 240
           RKLDDTEFKNPWARAYIRVKKYDGSPT  RSRSRSRSRSRSRSRSQSRSRSARRNRSKSV
Sbjct: 181 RKLDDTEFKNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSQSRSRSARRNRSKSV 240

Query: 241 ERSVSRSVSRSRSPSPVKSSR 262
           ERSVSRSVSRSRSPSPVKSSR
Sbjct: 241 ERSVSRSVSRSRSPSPVKSSR 258

BLAST of MS006161 vs. NCBI nr
Match: XP_038907230.1 (serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907232.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907233.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida])

HSP 1 Score: 444.5 bits (1142), Expect = 6.3e-121
Identity = 246/269 (91.45%), Postives = 251/269 (93.31%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY       GGGG GGGGG GGGRFGV
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY-------GGGGSGGGGGAGGGRFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFGIVDYTNYDDMKYA+
Sbjct: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAM 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSQSRSRS--------A 240
           RKLDDTEF+NPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRS+SRSRS        A
Sbjct: 181 RKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSRSRPA 240

Query: 241 RRNRSKSVERSVSRSVSRSRSPSPVKSSR 262
           RRNRSKS ERSVSRSVSRSRSPSPVKSSR
Sbjct: 241 RRNRSKSAERSVSRSVSRSRSPSPVKSSR 262

BLAST of MS006161 vs. NCBI nr
Match: XP_022974340.1 (serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita maxima] >XP_022974341.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita maxima] >XP_022974342.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita maxima] >XP_022974343.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita maxima] >XP_022974344.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita maxima] >XP_022974345.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 437.2 bits (1123), Expect = 1.0e-118
Identity = 249/291 (85.57%), Postives = 256/291 (87.97%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY---GGGGGGGGGGGGGGGGGGGGGR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY   GGGGGGGGGGGGGGGGGGGGGR
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGGR 120

Query: 121 FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMK 180
           FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFG+VDYTNYDDMK
Sbjct: 121 FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMK 180

Query: 181 YAIRKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRS---------------------- 240
           YAIRKLDDTEF+NPWAR YIRVKKYDGSPTRSRSRSRS                      
Sbjct: 181 YAIRKLDDTEFRNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSRSRSRSRSRSRSRGR 240

Query: 241 -------RSRSRSRSRSQSRSRSARRNRSKSVERSVSRSVSRSRSPSPVKS 260
                  RS+SRSRSRS+SRSRSAR NRSKS ERSVSRSVSRSRSPSPVKS
Sbjct: 241 DRSRSRNRSQSRSRSRSRSRSRSARPNRSKSAERSVSRSVSRSRSPSPVKS 291

BLAST of MS006161 vs. NCBI nr
Match: XP_023533518.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 432.6 bits (1111), Expect = 2.5e-117
Identity = 236/261 (90.42%), Postives = 244/261 (93.49%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+Y        GG GGGGGGGGGGRFGV
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNY--------GGSGGGGGGGGGGRFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS D+EGTFG VDYTNYDDMKYAI
Sbjct: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEGTFGTVDYTNYDDMKYAI 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSQSRSRSARRNRSKSV 240
           RKLDDTEFKNPWARAYIRVKKY+GSPTR RSR+RSRSRSRSRSRS+SRSRSARRNRSKS 
Sbjct: 181 RKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRSRSRSRSRSARRNRSKSA 240

Query: 241 ERSVSRSVSRSRSPSPVKSSR 262
           E+SVSRSVSRSRS SPVKSSR
Sbjct: 241 EQSVSRSVSRSRSLSPVKSSR 253

BLAST of MS006161 vs. NCBI nr
Match: XP_022974346.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 431.4 bits (1108), Expect = 5.5e-117
Identity = 242/288 (84.03%), Postives = 249/288 (86.46%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY       GGGGGGGGGGGGGGRFGV
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY-------GGGGGGGGGGGGGGRFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFG+VDYTNYDDMKYAI
Sbjct: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAI 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRS------------------------- 240
           RKLDDTEF+NPWAR YIRVKKYDGSPTRSRSRSRS                         
Sbjct: 181 RKLDDTEFRNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSRSRSRSRSRSRSRGRDRS 240

Query: 241 ----RSRSRSRSRSQSRSRSARRNRSKSVERSVSRSVSRSRSPSPVKS 260
               RS+SRSRSRS+SRSRSAR NRSKS ERSVSRSVSRSRSPSPVKS
Sbjct: 241 RSRNRSQSRSRSRSRSRSRSARPNRSKSAERSVSRSVSRSRSPSPVKS 281

BLAST of MS006161 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 3.4e-101
Identity = 209/270 (77.41%), Postives = 233/270 (86.30%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR    GG GGGG G GGGGGGGG  RFGV
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR----GGYGGGGSGYGGGGGGGGSARFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           S+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RD++GT+G+VDYTNYDDMKYAI
Sbjct: 121 SRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAI 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDG------SPTRSRSRSRSRSRSR------SRSRSQSR 240
           RKLDDTEF+NPWAR +IRVKKY+       SP+RSRSRSRSRSRSR      SRSRS SR
Sbjct: 181 RKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSR 240

Query: 241 SRSARRNRSKSVERSVSRSVSRSRSPSPVK 259
           S+S R++ SKS  RS+SRS+S+SRSPSP K
Sbjct: 241 SKSPRKDLSKSPRRSLSRSISKSRSPSPDK 266

BLAST of MS006161 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 6.0e-74
Identity = 173/274 (63.14%), Postives = 205/274 (74.82%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GGG G G GG        G 
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSR------GP 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD  GT G+VDYT Y+DMKYA+
Sbjct: 121 SRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYAL 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSQSRSRSARRN 240
           +KLDDTEF+N ++  Y+RV++YD      SP+R RS S+SRSRSR RS S+SRSRS  R+
Sbjct: 181 KKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRS 240

Query: 241 RS---KSVERSVSRSVSR-------SRSPSPVKS 260
           RS   KS  RS ++S SR       SRSPSP +S
Sbjct: 241 RSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRS 267

BLAST of MS006161 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.6e-72
Identity = 173/268 (64.55%), Postives = 201/268 (75.00%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRTIYVGNLP DI+E E+EDLF KYG ++ I+LKIPPRPP Y FVEFE  RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AI  RDGY+FDG  LRVELAHGGR  SS D R SY      G G GG GGG GGG   G 
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSY-----SGRGRGGRGGGDGGGRERGP 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           S+RSEYRV+V GLPSSASWQDLKDHMRK G+VCF++V RD  GT GIVDYT+Y+DMKYA 
Sbjct: 121 SRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA- 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSQSRSRSARRN 240
             LDDTEF+N ++  Y+RV++YD      SP+R RS S+SRSR RS SRS+SRSRS  ++
Sbjct: 181 --LDDTEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKS 240

Query: 241 RS---KSVERSVSRSVSRS-RSPSPVKS 260
           RS   KS+ RS ++S SRS RS S  KS
Sbjct: 241 RSPKAKSLRRSPAKSTSRSPRSRSRSKS 259

BLAST of MS006161 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.7e-68
Identity = 164/278 (58.99%), Postives = 196/278 (70.50%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR++RTIYVGNLP DI++ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE  RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGR--GPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRF 120
           AI  RDGY+FDGCRLRVE+AHGGR   PS     SSY                       
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR------------------- 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKY 180
             S+RS+YRV+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G+VDY+NYDDMKY
Sbjct: 121 APSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKY 180

Query: 181 AIRKLDDTEFKNPWARAYIRVKKYDG-----SPTRSRS-RSRSRSR-------SRSRSRS 240
           AIRKLD TEF+N ++ AYIRV++Y+      SP  S+S RSRSRSR       S+SRS S
Sbjct: 181 AIRKLDATEFRNAFSSAYIRVREYESRSVSRSPDDSKSYRSRSRSRGPSCSYSSKSRSVS 240

Query: 241 QSRS---RSARRNRSKSVERSVSRSVSRSRSPSPVKSS 261
            +RS   RS   +RS+S+  SVSRS SRS+S S  +S+
Sbjct: 241 PARSISPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSN 259

BLAST of MS006161 vs. ExPASy Swiss-Prot
Match: Q6DII2 (Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis OX=8364 GN=srsf1 PE=2 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.5e-56
Identity = 156/253 (61.66%), Postives = 181/253 (71.54%), Query Frame = 0

Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           IYVGNLP DI+  +IED+FYKYG I DI+LK     P + FVEFE  RDAEDA+  RDGY
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGG----GRFG-VSKR 128
           ++DG RLRVE    GRG          GGGGGGGGGGGGGGGGGGGG    GR+G  S+R
Sbjct: 78  DYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRR 137

Query: 129 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAIRKL 188
           SEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT G+V++   +DM YA+RKL
Sbjct: 138 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKL 197

Query: 189 DDTEFK-NPWARAYIRVKKYDG--SPTRSRSRSRSRSRSRSRSRSQSRSRSARRNRSKSV 248
           D+T+F+ +    AYIRV K DG  SP+  RSRSRSRSRSRSRSRS SRSRS    RS+  
Sbjct: 198 DNTKFRSHEGETAYIRV-KVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGS 257

Query: 249 ERSVSRSVSRSRS 254
            R   R  SRSRS
Sbjct: 258 PRYSPRH-SRSRS 265

BLAST of MS006161 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 6.3e-127
Identity = 258/261 (98.85%), Postives = 258/261 (98.85%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY GGGGGGGGGGGGGGGGGGGGRFGV
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY-GGGGGGGGGGGGGGGGGGGGRFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI
Sbjct: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSQSRSRSARRNRSKSV 240
           RKLDDTEFKNPWARAYIRVKKYDGSPT  RSRSRSRSRSRSRSRSQSRSRSARRNRSKSV
Sbjct: 181 RKLDDTEFKNPWARAYIRVKKYDGSPT--RSRSRSRSRSRSRSRSQSRSRSARRNRSKSV 240

Query: 241 ERSVSRSVSRSRSPSPVKSSR 262
           ERSVSRSVSRSRSPSPVKSSR
Sbjct: 241 ERSVSRSVSRSRSPSPVKSSR 258

BLAST of MS006161 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.6e-125
Identity = 255/264 (96.59%), Postives = 260/264 (98.48%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY--GGGGGGGGGGGGGGGGGGGGGRF 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY  GGGGGGGGGGGGGGGGGGGGGRF
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120

Query: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKY 180
           GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFGIVDYTNYDDMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSQSRSRSARRNRSK 240
           AIRKLDDTEF+NPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRS+SRSR+ARRNRSK
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSK 240

Query: 241 SVE-RSVSRSVSRSRSPSPVKSSR 262
           S E RSVSRSVSRSRSPSP+KSSR
Sbjct: 241 SAERRSVSRSVSRSRSPSPIKSSR 264

BLAST of MS006161 vs. ExPASy TrEMBL
Match: A0A6J1IB34 (serine/arginine-rich splicing factor SR34A-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.9e-119
Identity = 249/291 (85.57%), Postives = 256/291 (87.97%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY---GGGGGGGGGGGGGGGGGGGGGR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY   GGGGGGGGGGGGGGGGGGGGGR
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGGR 120

Query: 121 FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMK 180
           FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFG+VDYTNYDDMK
Sbjct: 121 FGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMK 180

Query: 181 YAIRKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRS---------------------- 240
           YAIRKLDDTEF+NPWAR YIRVKKYDGSPTRSRSRSRS                      
Sbjct: 181 YAIRKLDDTEFRNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSRSRSRSRSRSRSRGR 240

Query: 241 -------RSRSRSRSRSQSRSRSARRNRSKSVERSVSRSVSRSRSPSPVKS 260
                  RS+SRSRSRS+SRSRSAR NRSKS ERSVSRSVSRSRSPSPVKS
Sbjct: 241 DRSRSRNRSQSRSRSRSRSRSRSARPNRSKSAERSVSRSVSRSRSPSPVKS 291

BLAST of MS006161 vs. ExPASy TrEMBL
Match: A0A6J1IB38 (serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 2.7e-117
Identity = 242/288 (84.03%), Postives = 249/288 (86.46%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY       GGGGGGGGGGGGGGRFGV
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY-------GGGGGGGGGGGGGGRFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFG+VDYTNYDDMKYAI
Sbjct: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAI 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRS------------------------- 240
           RKLDDTEF+NPWAR YIRVKKYDGSPTRSRSRSRS                         
Sbjct: 181 RKLDDTEFRNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSRSRSRSRSRSRSRGRDRS 240

Query: 241 ----RSRSRSRSRSQSRSRSARRNRSKSVERSVSRSVSRSRSPSPVKS 260
               RS+SRSRSRS+SRSRSAR NRSKS ERSVSRSVSRSRSPSPVKS
Sbjct: 241 RSRNRSQSRSRSRSRSRSRSARPNRSKSAERSVSRSVSRSRSPSPVKS 281

BLAST of MS006161 vs. ExPASy TrEMBL
Match: A0A6J1E2U1 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN=LOC111430311 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 3.5e-117
Identity = 245/297 (82.49%), Postives = 252/297 (84.85%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY    GGGGGGGGGGGGGGGGGRFGV
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSY----GGGGGGGGGGGGGGGGGRFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EGTFG+VDYTNYDDMKYAI
Sbjct: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAI 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSR---------------- 240
           RKLDDTEF+NPWAR YIRVKKYDGSPTRSRSRSRSRS+SRSRSR                
Sbjct: 181 RKLDDTEFRNPWARGYIRVKKYDGSPTRSRSRSRSRSKSRSRSRSRSRSRSRSRSRSRSR 240

Query: 241 ----------------------SQSRSRSARRNRSKSVERSVSRSVSRSRSPSPVKS 260
                                 S+SRSRSAR NRSKS ERSVSRSVSRSRSPSPVKS
Sbjct: 241 GRDRDRSRSRSRSRNRSQSRNQSRSRSRSARPNRSKSAERSVSRSVSRSRSPSPVKS 293

BLAST of MS006161 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 369.4 bits (947), Expect = 2.4e-102
Identity = 209/270 (77.41%), Postives = 233/270 (86.30%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR    GG GGGG G GGGGGGGG  RFGV
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR----GGYGGGGSGYGGGGGGGGSARFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           S+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RD++GT+G+VDYTNYDDMKYAI
Sbjct: 121 SRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAI 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDG------SPTRSRSRSRSRSRSR------SRSRSQSR 240
           RKLDDTEF+NPWAR +IRVKKY+       SP+RSRSRSRSRSRSR      SRSRS SR
Sbjct: 181 RKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSR 240

Query: 241 SRSARRNRSKSVERSVSRSVSRSRSPSPVK 259
           S+S R++ SKS  RS+SRS+S+SRSPSP K
Sbjct: 241 SKSPRKDLSKSPRRSLSRSISKSRSPSPDK 266

BLAST of MS006161 vs. TAIR 10
Match: AT3G49430.2 (SER/ARG-rich protein 34A )

HSP 1 Score: 369.4 bits (947), Expect = 2.4e-102
Identity = 209/270 (77.41%), Postives = 233/270 (86.30%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR    GG GGGG G GGGGGGGG  RFGV
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR----GGYGGGGSGYGGGGGGGGSARFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           S+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RD++GT+G+VDYTNYDDMKYAI
Sbjct: 121 SRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAI 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDG------SPTRSRSRSRSRSRSR------SRSRSQSR 240
           RKLDDTEF+NPWAR +IRVKKY+       SP+RSRSRSRSRSRSR      SRSRS SR
Sbjct: 181 RKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSR 240

Query: 241 SRSARRNRSKSVERSVSRSVSRSRSPSPVK 259
           S+S R++ SKS  RS+SRS+S+SRSPSP K
Sbjct: 241 SKSPRKDLSKSPRRSLSRSISKSRSPSPDK 266

BLAST of MS006161 vs. TAIR 10
Match: AT3G49430.3 (SER/ARG-rich protein 34A )

HSP 1 Score: 369.4 bits (947), Expect = 2.4e-102
Identity = 209/270 (77.41%), Postives = 233/270 (86.30%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR    GG GGGG G GGGGGGGG  RFGV
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRR----GGYGGGGSGYGGGGGGGGSARFGV 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           S+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RD++GT+G+VDYTNYDDMKYAI
Sbjct: 121 SRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAI 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDG------SPTRSRSRSRSRSRSR------SRSRSQSR 240
           RKLDDTEF+NPWAR +IRVKKY+       SP+RSRSRSRSRSRSR      SRSRS SR
Sbjct: 181 RKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSR 240

Query: 241 SRSARRNRSKSVERSVSRSVSRSRSPSPVK 259
           S+S R++ SKS  RS+SRS+S+SRSPSP K
Sbjct: 241 SKSPRKDLSKSPRRSLSRSISKSRSPSPDK 266

BLAST of MS006161 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 278.9 bits (712), Expect = 4.3e-75
Identity = 173/274 (63.14%), Postives = 205/274 (74.82%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GGG G G GG        G 
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSR------GP 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD  GT G+VDYT Y+DMKYA+
Sbjct: 121 SRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYAL 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSQSRSRSARRN 240
           +KLDDTEF+N ++  Y+RV++YD      SP+R RS S+SRSRSR RS S+SRSRS  R+
Sbjct: 181 KKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRS 240

Query: 241 RS---KSVERSVSRSVSR-------SRSPSPVKS 260
           RS   KS  RS ++S SR       SRSPSP +S
Sbjct: 241 RSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRS 267

BLAST of MS006161 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 278.9 bits (712), Expect = 4.3e-75
Identity = 173/274 (63.14%), Postives = 205/274 (74.82%), Query Frame = 0

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGRFGV 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG GGG G G GG        G 
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSR------GP 120

Query: 121 SKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEGTFGIVDYTNYDDMKYAI 180
           S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD  GT G+VDYT Y+DMKYA+
Sbjct: 121 SRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYAL 180

Query: 181 RKLDDTEFKNPWARAYIRVKKYDG-----SPTRSRSRSRSRSRSRSRSRSQSRSRSARRN 240
           +KLDDTEF+N ++  Y+RV++YD      SP+R RS S+SRSRSR RS S+SRSRS  R+
Sbjct: 181 KKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRS 240

Query: 241 RS---KSVERSVSRSVSR-------SRSPSPVKS 260
           RS   KS  RS ++S SR       SRSPSP +S
Sbjct: 241 RSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRS 267

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137780.11.3e-12698.85serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1... [more]
XP_038907230.16.3e-12191.45serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 s... [more]
XP_022974340.11.0e-11885.57serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita maxima] >X... [more]
XP_023533518.12.5e-11790.42serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp... [more]
XP_022974346.15.5e-11784.03serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A2RVS63.4e-10177.41Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
O223156.0e-7463.14Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
F4JHI79.6e-7264.55Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
Q9XFR51.7e-6858.99Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
Q6DII21.5e-5661.66Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis OX=8364 GN=srsf1 PE... [more]
Match NameE-valueIdentityDescription
A0A6J1C7M86.3e-12798.85serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0KLR91.6e-12596.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1[more]
A0A6J1IB344.9e-11985.57serine/arginine-rich splicing factor SR34A-like isoform X1 OS=Cucurbita maxima O... [more]
A0A6J1IB382.7e-11784.03serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Cucurbita maxima O... [more]
A0A6J1E2U13.5e-11782.49serine/arginine-rich splicing factor SR34A-like OS=Cucurbita moschata OX=3662 GN... [more]
Match NameE-valueIdentityDescription
AT3G49430.12.4e-10277.41SER/ARG-rich protein 34A [more]
AT3G49430.22.4e-10277.41SER/ARG-rich protein 34A [more]
AT3G49430.32.4e-10277.41SER/ARG-rich protein 34A [more]
AT1G02840.14.3e-7563.14RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G02840.34.3e-7563.14RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 127..196
e-value: 9.9E-8
score: 41.7
coord: 8..78
e-value: 3.1E-22
score: 89.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..76
e-value: 2.1E-18
score: 65.9
coord: 128..190
e-value: 2.2E-12
score: 46.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 126..204
score: 10.274912
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..82
score: 16.568354
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..122
e-value: 2.2E-29
score: 104.3
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 125..203
e-value: 5.2E-24
score: 85.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 202..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..261
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..117
NoneNo IPR availablePANTHERPTHR23147:SF63SERINE/ARGININE-RICH SPLICING FACTOR SR34Acoord: 2..259
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 2..259
NoneNo IPR availableCDDcd12602RRM2_SF2_plant_likecoord: 126..201
e-value: 1.06796E-42
score: 138.408
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..196

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006161.1MS006161.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding