MS006109 (gene) Bitter gourd (TR) v1

Overview


Name	MS006109
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold96: 119645 .. 119929 (-)
RNA-Seq Expression	MS006109
Synteny	MS006109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTTGAAGGCGGAAGAAGCTTGGAGCGGATGAATGCTTATGGGAAGAAACAATGTAGGAGCTTGTTCTGGAGGGCGAGGGCGGCCTTAAAGAAGGCTATGAAGAATGGAAGCAAGCGACAACTCAAGTTTCAGTACGATCCCAGCAGCTATGCTCTTAATTTTGATGATGGTCACAACAAAATGGGCGAGGATTCTGATGCCTTCAAATTTGAACTTCAGTACTGTGGCAGTGCTTACAATTCCGCCATGTGGGTTTATGTTCTTTGGGTGAAATCTGAG

mRNA sequence

ATGAAACTTGAAGGCGGAAGAAGCTTGGAGCGGATGAATGCTTATGGGAAGAAACAATGTAGGAGCTTGTTCTGGAGGGCGAGGGCGGCCTTAAAGAAGGCTATGAAGAATGGAAGCAAGCGACAACTCAAGTTTCAGTACGATCCCAGCAGCTATGCTCTTAATTTTGATGATGGTCACAACAAAATGGGCGAGGATTCTGATGCCTTCAAATTTGAACTTCAGTACTGTGGCAGTGCTTACAATTCCGCCATGTGGGTTTATGTTCTTTGGGTGAAATCTGAG

Coding sequence (CDS)

ATGAAACTTGAAGGCGGAAGAAGCTTGGAGCGGATGAATGCTTATGGGAAGAAACAATGTAGGAGCTTGTTCTGGAGGGCGAGGGCGGCCTTAAAGAAGGCTATGAAGAATGGAAGCAAGCGACAACTCAAGTTTCAGTACGATCCCAGCAGCTATGCTCTTAATTTTGATGATGGTCACAACAAAATGGGCGAGGATTCTGATGCCTTCAAATTTGAACTTCAGTACTGTGGCAGTGCTTACAATTCCGCCATGTGGGTTTATGTTCTTTGGGTGAAATCTGAG

Protein sequence

MKLEGGRSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDGHNKMGEDSDAFKFELQYCGSAYNSAMWVYVLWVKSE

Homology

[Close]

BLAST of MS006109 vs. NCBI nr
Match: KGN64641.1 (hypothetical protein Csa_013386 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 1.4e-38
Identity = 79/96 (82.29%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MKLEGGRSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDGH 60
          MK+EG RSLERMNAYGKKQCRSLFW+ +AALKKA+KNG+KRQLKFQYDPSSYALNFDDGH
Sbjct: 1  MKMEGSRSLERMNAYGKKQCRSLFWKVKAALKKAIKNGNKRQLKFQYDPSSYALNFDDGH 60

Query: 61 NKMGEDS-DAFKFELQYCGSAYNSAMWVYVLWVKSE 96
          +++ ED+ DA+KFE+QYCG+ YNSAMWVYVLWVKSE
Sbjct: 61 SEIREDNVDAYKFEVQYCGNVYNSAMWVYVLWVKSE 96

[Close]

BLAST of MS006109 vs. NCBI nr
Match: KAA0056955.1 (putative Glucose-fructose oxidoreductase domain-containing protein 2 [Cucumis melo var. makuwa] >TYK26382.1 putative Glucose-fructose oxidoreductase domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 9.2e-38
Identity = 78/96 (81.25%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1   MKLEGGRSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDGH 60
           MK+EG RSLERMNAYGKKQCRSLFW+ +AALKKA+KNG+KRQLKFQYDPSSYALNFDDGH
Sbjct: 24  MKMEGSRSLERMNAYGKKQCRSLFWKMKAALKKAIKNGNKRQLKFQYDPSSYALNFDDGH 83

Query: 61  NKMGEDS-DAFKFELQYCGSAYNSAMWVYVLWVKSE 96
           +K+ ED+ +A+KFE+QYCG+ YNSA WVYVLWVKSE
Sbjct: 84  SKIREDNVEAYKFEVQYCGNVYNSATWVYVLWVKSE 119

[Close]

BLAST of MS006109 vs. NCBI nr
Match: KAG6584014.1 (hypothetical protein SDJN03_19946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.2 bits (326), Expect = 9.6e-27
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 0


Query: 1  MKLEGGRSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQ--LKFQYDPSSYALNFDD 60
          MKLEGGR LER NAYGKKQC +LFWR RAALKKA+KNGS RQ  LKFQYDPSSYALNFDD
Sbjct: 1  MKLEGGRRLERTNAYGKKQCLNLFWRVRAALKKAIKNGSNRQLKLKFQYDPSSYALNFDD 60

Query: 61 GHNKMGEDSDAFKFELQYCGSAYNSAMWVYVLWVKSE 96
          G           ++ELQ+C + YNSAM  YVLW KSE
Sbjct: 61 GRT---------RYELQHCANVYNSAMRAYVLWGKSE 88

[Close]

BLAST of MS006109 vs. NCBI nr
Match: KAG6573243.1 (hypothetical protein SDJN03_27130, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 2.1e-21
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 1  MKLEGGRSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDGH 60
          MKL+G   L RMNAYGK+QC SLFWR RAALKKA+KNGSKR L+FQYDPSSYALNFDDGH
Sbjct: 1  MKLKGSIGLARMNAYGKRQCMSLFWRVRAALKKAIKNGSKRPLRFQYDPSSYALNFDDGH 60

Query: 61 NKMGED--SDAFKFE 74
           K+ ED   DA K+E
Sbjct: 61 TKISEDILDDASKYE 75

[Close]

BLAST of MS006109 vs. NCBI nr
Match: KDO75824.1 (hypothetical protein CISIN_1g034488mg [Citrus sinensis] >GAY34420.1 hypothetical protein CUMW_011340 [Citrus unshiu])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 7  RSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDGHNKMGED 66
          RSLE +N+YG+++CRSLFWR RAALKKA+K G K+Q KFQYDPSSYALNFDDG +  G  
Sbjct: 5  RSLEWVNSYGQRKCRSLFWRVRAALKKAVKTGGKQQFKFQYDPSSYALNFDDGRSNYGLG 64

Query: 67 SDAFKFELQYCGSAYNSAMWVYVLWVKSE 96
          ++  K       S   + MWV VLWV+S+
Sbjct: 65 ANGVKQAQHQDCSESKNVMWVCVLWVESQ 93

[Close]

BLAST of MS006109 vs. ExPASy TrEMBL
Match: A0A0A0LXB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073010 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.9e-39
Identity = 79/96 (82.29%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MKLEGGRSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDGH 60
          MK+EG RSLERMNAYGKKQCRSLFW+ +AALKKA+KNG+KRQLKFQYDPSSYALNFDDGH
Sbjct: 1  MKMEGSRSLERMNAYGKKQCRSLFWKVKAALKKAIKNGNKRQLKFQYDPSSYALNFDDGH 60

Query: 61 NKMGEDS-DAFKFELQYCGSAYNSAMWVYVLWVKSE 96
          +++ ED+ DA+KFE+QYCG+ YNSAMWVYVLWVKSE
Sbjct: 61 SEIREDNVDAYKFEVQYCGNVYNSAMWVYVLWVKSE 96

[Close]

BLAST of MS006109 vs. ExPASy TrEMBL
Match: A0A5D3DSE1 (Putative Glucose-fructose oxidoreductase domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00440 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.5e-38
Identity = 78/96 (81.25%), Postives = 90/96 (93.75%), Query Frame = 0


Query: 1   MKLEGGRSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDGH 60
           MK+EG RSLERMNAYGKKQCRSLFW+ +AALKKA+KNG+KRQLKFQYDPSSYALNFDDGH
Sbjct: 24  MKMEGSRSLERMNAYGKKQCRSLFWKMKAALKKAIKNGNKRQLKFQYDPSSYALNFDDGH 83

Query: 61  NKMGEDS-DAFKFELQYCGSAYNSAMWVYVLWVKSE 96
           +K+ ED+ +A+KFE+QYCG+ YNSA WVYVLWVKSE
Sbjct: 84  SKIREDNVEAYKFEVQYCGNVYNSATWVYVLWVKSE 119

[Close]

BLAST of MS006109 vs. ExPASy TrEMBL
Match: A0A314YKP4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_15365 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.3e-20
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 8  SLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDGHNKMGEDS 67
          SL  +NAY +KQCRSLFWR RAALKKA+KN  K+QL+FQYDPSSYALNFDDG  K  +++
Sbjct: 6  SLVWVNAYSRKQCRSLFWRMRAALKKALKNSGKKQLRFQYDPSSYALNFDDGSWKSAQEA 65

Query: 68 DAFKFE-----LQYCGSAYNSAMWVYVLWVKSE 96
          +A K +       +  S   +  WVYVLWV SE
Sbjct: 66 NALKLKHATKPQPHSDSDVKNTAWVYVLWVVSE 98

[Close]

BLAST of MS006109 vs. ExPASy TrEMBL
Match: A0A067G8B6 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034488mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.3e-20
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 7  RSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDGHNKMGED 66
          RSLE +N+YG+++CRSLFWR RAALKKA+K G K+Q KFQYDPSSYALNFDDG +  G  
Sbjct: 5  RSLEWVNSYGQRKCRSLFWRVRAALKKAVKTGGKQQFKFQYDPSSYALNFDDGRSNYGLG 64

Query: 67 SDAFKFELQYCGSAYNSAMWVYVLWVKSE 96
          ++  K       S   + MWV VLWV+S+
Sbjct: 65 ANGVKQAQHQDCSESKNVMWVCVLWVESQ 93

[Close]

BLAST of MS006109 vs. ExPASy TrEMBL
Match: A0A2H5N2F2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_011340 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.3e-20
Identity = 52/89 (58.43%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 7  RSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDGHNKMGED 66
          RSLE +N+YG+++CRSLFWR RAALKKA+K G K+Q KFQYDPSSYALNFDDG +  G  
Sbjct: 5  RSLEWVNSYGQRKCRSLFWRVRAALKKAVKTGGKQQFKFQYDPSSYALNFDDGRSNYGLG 64

Query: 67 SDAFKFELQYCGSAYNSAMWVYVLWVKSE 96
          ++  K       S   + MWV VLWV+S+
Sbjct: 65 ANGVKQAQHQDCSESKNVMWVCVLWVESQ 93

[Close]

BLAST of MS006109 vs. TAIR 10
Match: AT1G11112.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 7.6e-06
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 1  MKLEGGRSLERMNAYGKKQCRSLFWRARAALKKAMKNGSKRQLKFQYDPSSYALNFDDG 60
          M+LE     E +N Y KK    +F R +AA+KK  K   K+Q  FQYDP SYALNFDDG
Sbjct: 1  MRLED--RFEAVNQYRKK----MFRRMKAAVKKTKK---KKQTMFQYDPWSYALNFDDG 50

The following BLAST results are available for this feature:

BLAST of MS006109 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64641.1	1.4e-38	82.29	hypothetical protein Csa_013386 [Cucumis sativus]	[more]
KAA0056955.1	9.2e-38	81.25	putative Glucose-fructose oxidoreductase domain-containing protein 2 [Cucumis me...	[more]
KAG6584014.1	9.6e-27	70.10	hypothetical protein SDJN03_19946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6573243.1	2.1e-21	74.67	hypothetical protein SDJN03_27130, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KDO75824.1	1.9e-19	58.43	hypothetical protein CISIN_1g034488mg [Citrus sinensis] >GAY34420.1 hypothetical...	[more]

BLAST of MS006109 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS006109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXB8	6.9e-39	82.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073010 PE=4 SV=1	[more]
A0A5D3DSE1	4.5e-38	81.25	Putative Glucose-fructose oxidoreductase domain-containing protein 2 OS=Cucumis ...	[more]
A0A314YKP4	9.3e-20	58.06	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_153...	[more]
A0A067G8B6	9.3e-20	58.43	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034488mg PE=4 SV=1	[more]
A0A2H5N2F2	9.3e-20	58.43	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_011340 PE=4 SV=1	[more]

BLAST of MS006109 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11112.1	7.6e-06	52.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34538:SF10	OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2, PUTATIVE-RELATED	coord: 7..94
None	No IPR available	PANTHER	PTHR34538	EXPRESSED PROTEIN	coord: 7..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006109.1	MS006109.1	mRNA