MS006060 (gene) Bitter gourd (TR) v1

Overview


Name	MS006060
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	serine/arginine-rich SC35-like splicing factor SCL28
Location	scaffold254: 3477138 .. 3481125 (+)
RNA-Seq Expression	MS006060
Synteny	MS006060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGGTACCGGAGCCGGAGCAGAAGCTACAGCCCTCGCCGGCGCAGCAGAAGCCCGCCGCGCGGGCGGAAGCGGTATGACGACGACCCTCGAGACCGGTACCACGAGAGCAGGTCTTACAGGGACCGTCGCTCTCCCGCTCCTTCTGGGTTACTCGTGCGCAATCTCCCTCTTGATGCCAGGTATTTCATGTTCTTCTTCGAGCCTTATTTGTTATCCCTAATGTTTTACTTTCTTAGTTTGTTAGAGGAAGTGGATGGCAATTTTACTTGTGCGTTTGTACGCTATAAGTGTTATTTTCTCTGTCTAGAGTTTCGATGTTTGAGCAGTGGGAAAATACAGTTTGTTTTTGGAATTATGATTAGTAGTTATATTATATAAATAGTTGGTCGAGTGGAGCCTTTGTTGCGTGTAATTTATTGTCAAGATGTGTGTAATCACTCTACATTGTATTGTTTTATGGTTTCCAATTGTCTATCTATGCTATGAATTATTAAGAACAACGACTTAGTGTTTTGATTGCATTCATTCAGGCCGGAAGATCTTAGGACTCCGTTTGAGCGATTTGGTCCTGTCAAGGATGTGTATCTGCCTAAGAACTACTACACTGGGTATGACTGCTTTGTCATGTTAGCTTGTGCGCACTTGGGTGTTGAAGAAACCAATTTATTACTTCCTGGTACTTTTTTCTCTTAATTATCAGGGTATCCACACTATAAAATAGAGTTTTGGTTATCTTAATTAATAAATTGACTGGTACTTTTTCTCCTACCTATTAGGGTATCCACACTAGAAAATATAGTTATGGCTACATTACTTATGAATGGAAGATCTAGAAAATTGATATTGTTTTTGAAATTAAGTTAGTGAGATCAGAAGTTTGGAGCAGCATTGAAGTTTCAGAGTTTAAATTGCCTTTTGTATCTTGTAGTTATCTAGTGAAGATTGTTTAACAACTTAATTTTCTTGTAGTTATTTAGCGAAGATTTTTGAACAATTCAATTTGATGAAATGAGGATTAAAATTTCTGTATATGGAAGGGATCTCCAAATTCTTTTAATAACCTAGACTGAGTGCACACTTAATCTAAGAGAAGATAAGGACGATTAATAAGAAATTTGTTGATAGGAAATGATATTTTGGTTAGTGTGTAATGAGAGTGGTTAACATTTTAGTTTAAACAATTTTTTGAATTTTGTTGATAATAAAGATGCTACAAAAGTATAAATTAGATGACAATGGAGATTATATTATTCTCTGTGTTGTATACTTGAATTAACAAGTGATTTTGCCTAAAATTTATCTGTTGCTTCATATAGTATTCAGGTTTTTTGCCTTACTACCAGATGTTGTATTAAATATAGACAGATGTATCGTTCCCTCAGAAAAATGCTCACTTCCATATGTAAACTTAAGCCAGAATATCTGTTTTCTTAAGAGAAAGTTGTCTGCTTAAAAGGTAACAATGATTAATTGGACAGAAAATGAATACTGCTTATCAGATAATATTGTGTTGTGACCGGTGATATCGTGGCAACCCTTTCTCCAGTTAGTACCAACCGGCTTTATATTTCTTGTGTTTTTAATATATGGGTTTATGACAGACTAACAGTAACGACCTGTTTCTTTGTATTTATTTTGTTAAATATTTATATAAATTTCATGTCAATTGTAGGGAGCCCCGGGGATTTGGGTTTGTAAAGTTCCGATTTGCAGAAGATGCAGCTGAAGCAAAACAACAGCTAAATCATACAGTTATAGGTGGTCGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACTTCACGTTCAAGGTTCTATGACCTTCCACCTAACTTCTATCTTGCAATATCCTTTTTGGTTTGGATTGAATATCTTCTCATGAAAGGATTATTTCTAGTCTCGGACTGATATATCGTTGGTCCATTTATTGCTTTTCATATTTAGTGGCAGAAGCTACCGAAGGCGGTCTCCAGCAAGGTCTCCAAGACGGCGATATCGTTGTCAGTGTCAATACATTTATCTTGCTCTTTTAAATGACTTTCATGAAAAGAAGAAATCATATTTGGGTTGCTTGATGTTTTTAGAAGTCATTGTGATGCAATATTGTGATTACACCCTCATTTTATGCTCAGCACCTTCTTTTATTTGACTGCAGCTTACTCGCGCTCTCCTTCACCTGCCAGGCATGACTCAAGGTTGGATCTTATTTGTCATACTCATTTTATTACTAGCAAGTAGCAGCATTAATATCATTATAGTCCTGCCGTTTCCATTTCTTCTTGCTACTACCATAATTTGAAATATTATTTGTTCCTATTTTGATAACTAGCAAGTTGCCTGCAGTTTTGGTATTATAACATTTGATCCCTATTTTCTAACTACTACGTACTACCATAATTTGAACCCTATTTTGGTGCACTATAACATGTCATAACATTATTTTTGGATGAGAAACATAGTGTAGGATTTTGAATTTTGGTACTTATGGAGTATCCAGACCTTCAATTGAAGCATTTGTTCAATGTTAATGTACATATCTTTTCAGTATAACCTAAATGATTTTGTTTGTAATTTTAATGTAAGACTAGGTCCACATTGAGTGGAAATTTATGCTTGTAGAAATATTTTGATAAACTAATAATAACTCTATTTACTAACCTGAAGCTGGCCCTACTTGGTTTTATGATGTCATTAGGCCAGACTTCAGTGTTTTTGTTTTTTCTACATGCGTTCATTGTAGAATATATATTTCATTTTCTTGAATGTTTTCATATTTTAAACAAAGCGACTAAATCTAATGTTTGATGCATGCGGATTATTCTCTCCTCCTTACATTATACAGGGTGCATTGCTGGAAATTGTACACAATCTACTTAATTCCTTGTTTATGCAGATATTAAAGTGTAAAGGGAGACTTTAAAGACTTGTTGATTAATAAAGTTTAACAAGAAAAGCGATCATAGAGTGATGGGCAACTTGCTTACTTTACCTATCGAACCCTCTCCATGAGTACAATCTATTACTTATTACATTGTCTTAGTTGCATGACTTCTATTTATTTGTTGACATTTGTTTTGTGAGGCTGAAGTTAAGCATTGGTGAGAGTTTAAAATCAAAAGTTATCTATGATTCTTATTTTTCCCTTTCTTTTTGTCCCTTGCGAATTTCAACAGTTTATTAGTAAGAAAGTGATTTTTTAAGTTTGATATCTTCTTTTGCATATACCATCCAGTTAAGAAAGATTAGAGCTTATAGTTGGCCAAAGAAAGAAATCATCTTCGAACGAGAAAGGCCAAAGTTTTACTGGTTGTGGTATGGTGACATTGTCCAAGAAAAAGATAATGTGATTTTTAGAAAGTTGGGGCAAAGAGAGCTATGAACTTGTCAGAAGCTGATCAACCAGTACAGCTTAATAGAGCATAATTCTCAGTGTTTGGATCTACTTGTCATAATTTTGTTCGGAAACCTGAAAATGGTGCAGGTAAAAGTCATGTTTCAGTTGATCAGTTTTAAAAATGATGTTAATAGAAGCTTGTGCTTGTATAAGTATGATATAGTATCATAAGTACCTATTGAACATACCTCATTGGAGCTCCATGAAGACTGCTTGGACAGGTTCTCTTTCCTGTTATAGAGGGAGACGGTTGTGTTGTGCTTTTTAAAGTCTGAATGGAATCATATCTGTTCAACATGCTGATTTATTCTTCTGTTAATATTTTCCCCACTGTTGTGGCTGAGGCAGGAACCGTGGGGCAAGGGATGAGTATCTCTCTCCTGCAAGATCTAGATCAATTTCACGATCTCGTTCCCCTCATGATAGGCGAGATTATAGCCGGTCTCCAAGTCCAAAGGAGAACGGTCGGAGCCCTCGTGAAGTGGACATTGAACGCAGTAGGTCAAGGAGTCTGAGGGCTGATAGCCGCAGTCCTTCTGGATCTCGCTCACAATCCTATAGG

mRNA sequence

ATGGCGAGGTACCGGAGCCGGAGCAGAAGCTACAGCCCTCGCCGGCGCAGCAGAAGCCCGCCGCGCGGGCGGAAGCGGTATGACGACGACCCTCGAGACCGGTACCACGAGAGCAGGTCTTACAGGGACCGTCGCTCTCCCGCTCCTTCTGGGTTACTCGTGCGCAATCTCCCTCTTGATGCCAGGCCGGAAGATCTTAGGACTCCGTTTGAGCGATTTGGTCCTGTCAAGGATGTGTATCTGCCTAAGAACTACTACACTGGGGAGCCCCGGGGATTTGGGTTTGTAAAGTTCCGATTTGCAGAAGATGCAGCTGAAGCAAAACAACAGCTAAATCATACAGTTATAGGTGGTCGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACTTCACGTTCAAGTGGCAGAAGCTACCGAAGGCGGTCTCCAGCAAGGTCTCCAAGACGGCGATATCGTTCTTACTCGCGCTCTCCTTCACCTGCCAGGCATGACTCAAGGAACCGTGGGGCAAGGGATGAGTATCTCTCTCCTGCAAGATCTAGATCAATTTCACGATCTCGTTCCCCTCATGATAGGCGAGATTATAGCCGGTCTCCAAGTCCAAAGGAGAACGGTCGGAGCCCTCGTGAAGTGGACATTGAACGCAGTAGGTCAAGGAGTCTGAGGGCTGATAGCCGCAGTCCTTCTGGATCTCGCTCACAATCCTATAGG

Coding sequence (CDS)

ATGGCGAGGTACCGGAGCCGGAGCAGAAGCTACAGCCCTCGCCGGCGCAGCAGAAGCCCGCCGCGCGGGCGGAAGCGGTATGACGACGACCCTCGAGACCGGTACCACGAGAGCAGGTCTTACAGGGACCGTCGCTCTCCCGCTCCTTCTGGGTTACTCGTGCGCAATCTCCCTCTTGATGCCAGGCCGGAAGATCTTAGGACTCCGTTTGAGCGATTTGGTCCTGTCAAGGATGTGTATCTGCCTAAGAACTACTACACTGGGGAGCCCCGGGGATTTGGGTTTGTAAAGTTCCGATTTGCAGAAGATGCAGCTGAAGCAAAACAACAGCTAAATCATACAGTTATAGGTGGTCGGGAGATACGAATTGTGTTTGCTGAGGAGAACAGGAAAACTCCTCAAGAAATGCGTGTGACTTCACGTTCAAGTGGCAGAAGCTACCGAAGGCGGTCTCCAGCAAGGTCTCCAAGACGGCGATATCGTTCTTACTCGCGCTCTCCTTCACCTGCCAGGCATGACTCAAGGAACCGTGGGGCAAGGGATGAGTATCTCTCTCCTGCAAGATCTAGATCAATTTCACGATCTCGTTCCCCTCATGATAGGCGAGATTATAGCCGGTCTCCAAGTCCAAAGGAGAACGGTCGGAGCCCTCGTGAAGTGGACATTGAACGCAGTAGGTCAAGGAGTCTGAGGGCTGATAGCCGCAGTCCTTCTGGATCTCGCTCACAATCCTATAGG

Protein sequence

MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLDARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGARDEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGSRSQSYR

Homology

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BLAST of MS006060 vs. NCBI nr
Match: XP_022137875.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Momordica charantia])

HSP 1 Score: 459.5 bits (1181), Expect = 1.8e-125
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180

Query: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240
           DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS
Sbjct: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240

Query: 241 RSQSY 246
           RSQSY
Sbjct: 241 RSQSY 245

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BLAST of MS006060 vs. NCBI nr
Match: XP_038878233.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida])

HSP 1 Score: 430.6 bits (1106), Expect = 8.9e-117
Identity = 231/245 (94.29%), Postives = 238/245 (97.14%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           M RYRSRSRSYSPRRRSR+PPRGRKR+DDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MGRYRSRSRSYSPRRRSRTPPRGRKRHDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSR+RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240
           +EYLSPARSRSISRSRSP DRRDYSRSP+PKENGRSPREVD  RSRSRS RADSRSPSGS
Sbjct: 181 EEYLSPARSRSISRSRSPRDRRDYSRSPTPKENGRSPREVDNARSRSRSPRADSRSPSGS 240

Query: 241 RSQSY 246
           RS+SY
Sbjct: 241 RSRSY 245

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BLAST of MS006060 vs. NCBI nr
Match: KAA0049431.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo var. makuwa] >TYK16110.1 serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo var. makuwa])

HSP 1 Score: 429.5 bits (1103), Expect = 2.0e-116
Identity = 230/246 (93.50%), Postives = 238/246 (96.75%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSR+RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240
           DEYLSPARSRSIS SRSP DR+DYSRSP+PK+NGRSPREVD  RSRSRS + DSRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

Query: 241 RSQSYR 247
           RS+SYR
Sbjct: 241 RSRSYR 246

[Close]

BLAST of MS006060 vs. NCBI nr
Match: XP_008438778.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo])

HSP 1 Score: 428.3 bits (1100), Expect = 4.4e-116
Identity = 229/245 (93.47%), Postives = 237/245 (96.73%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSR+RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240
           DEYLSPARSRSIS SRSP DR+DYSRSP+PK+NGRSPREVD  RSRSRS + DSRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

Query: 241 RSQSY 246
           RS+SY
Sbjct: 241 RSRSY 245

[Close]

BLAST of MS006060 vs. NCBI nr
Match: XP_004134179.1 (serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus])

HSP 1 Score: 426.4 bits (1095), Expect = 1.7e-115
Identity = 229/245 (93.47%), Postives = 236/245 (96.33%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRR RSYSRSPSPARHDSR+RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRNRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240
           DEYLSPARSRSIS SRSP DRRDYSRSP+PK+NGRSPREVD  RSRSRS + DSRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRRDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

Query: 241 RSQSY 246
           RS+SY
Sbjct: 241 RSRSY 245

[Close]

BLAST of MS006060 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 9.0e-64
Identity = 154/243 (63.37%), Postives = 175/243 (72.02%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R RSPPR RK YDD   +R  E  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR--SYRRRSPARSPRRRYRSYSRSPSPARHDSRNRG 180
           I IVFAEENRKTPQEMR T+ +SGR   Y+R S  RSPRRRYRS+SRS SP R +SR+  
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTS-HRSPRRRYRSHSRSRSPPRRESRHSK 180

Query: 181 ARDE--YLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDI---------ERSRS 231
            R++  Y    RSRSISRS  P + R+Y        N RSPRE  +          RSRS
Sbjct: 181 VREDDLYSPRRRSRSISRSPLPRNEREYK-----SRNCRSPREERVLTPIRSRCLSRSRS 234

[Close]

BLAST of MS006060 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-37
Identity = 121/244 (49.59%), Postives = 146/244 (59.84%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPR--GRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLDARPE 66
           R RSY+P     SPPR  GR+     PR R+  SR      S  P+ LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIV 126
           DLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAAEAK Q++  ++ GRE+ +V
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 FAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGARDEYL 186
           FAEENRK P EMR   R  GRS R +   RSP R    YSRSP P R   R+R     Y 
Sbjct: 122 FAEENRKKPTEMRTRDR-GGRSNRFQDRRRSPPR----YSRSP-PPRRGRRSRSRSRGYN 181

Query: 187 SPARSRSISRSRSPHDRR---DYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGSR 246
           SP   R  SRS SP DRR   + S S SP  NG   R     R +S S R+  RS S  +
Sbjct: 182 SPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHS-RSPRRSVSPRK 228

[Close]

BLAST of MS006060 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 7.2e-37
Identity = 121/249 (48.59%), Postives = 145/249 (58.23%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     SPPRG  R    P  R      Y  R    P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPR----GRYGGRSRDLPTSLLVRNLRHDCRQEDL 61

Query: 67  RTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGARDEYLS 186
           EENRK P EMR   R  GR   RRR+P      RY S SRSP P R  SR+R    +Y S
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPP-----RYYSRSRSPPPRRGRSRSRSG--DYYS 181

Query: 187 PARSRSISRSRSPHD-----RRDYSRSPSPKENGRSPREVDIERSRSRSL-----RADSR 245
           P   R   RS SP +     RR YSRSP+   +G   R +   R +SRSL     R+ SR
Sbjct: 182 PPPRRHHPRSISPREERYDGRRSYSRSPA--SDGSRGRSLTPVRGKSRSLSPSPRRSISR 232

[Close]

BLAST of MS006060 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-32
Identity = 117/257 (45.53%), Postives = 140/257 (54.47%), Query Frame = 0


Query: 11  YSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLDARPEDLRTPF 70
           YSP RR     RGR      PR  Y        RR  +   LLVRN+PLD RPE+LR PF
Sbjct: 9   YSPPRRGYG-GRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPEELREPF 68

Query: 71  ERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFAEENR 130
           ERFGPV+DVY+P++YY+G+PRGF FV+F  A DA EA++ +N     GREI +V A E+R
Sbjct: 69  ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVASESR 128

Query: 131 KTPQEMRVTS------------RSSGRSYRRR-SPARSPRR------RYRSYSRSPSPAR 190
           K P+EMRV +            RS GRS  R  S +RSPRR      RYRS S SP+P R
Sbjct: 129 KRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRR 188

Query: 191 HDSRNRGARDEYLSPARSRSISRSRSPHDRRDYSRSPSPKENG----RSPREVDIERSRS 245
                RG  DE  S        RS SP      + +P    NG    R     + E  R 
Sbjct: 189 RGGPPRGEEDENYS-------RRSYSPGYEGAAAAAPDRDRNGDNEIREKPGYEAE-DRR 248

[Close]

BLAST of MS006060 vs. ExPASy Swiss-Prot
Match: Q8WXF0 (Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.0e-19
Identity = 80/200 (40.00%), Postives = 108/200 (54.00%), Query Frame = 0


Query: 47  PAPSGLLVRNLPLDARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAE 106
           P  + L +RN+    RPEDLR  F R+GP+ DVY+P ++YT  PRGF +V+F    DA +
Sbjct: 7   PPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAED 66

Query: 107 AKQQLNHTVIGGREIRIVFAEENRKTPQEMRVTSR--SSGRSYRRRSPARSPRRRYRSYS 166
           A   LN   + GR+I I FA+ +RKTP +M+   R   S   +RR   +RSP +R R+ S
Sbjct: 67  ALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRR---SRSPSQR-RTRS 126

Query: 167 RSPSPARHDSRNRGARDEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIER 226
           RS S      RNR  R + L  +R R  S S+S    +   R  +     R+PR     R
Sbjct: 127 RSSS----WGRNR-RRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSR 186

Query: 227 SRSRSLRADSRSPSGSRSQS 245
            RSRS     RS S  +SQS
Sbjct: 187 GRSRSKSLQKRSKSIGKSQS 197

[Close]

BLAST of MS006060 vs. ExPASy TrEMBL
Match: A0A6J1C7W4 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3673 GN=LOC111009197 PE=3 SV=1)

HSP 1 Score: 459.5 bits (1181), Expect = 8.6e-126
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180

Query: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240
           DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS
Sbjct: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240

Query: 241 RSQSY 246
           RSQSY
Sbjct: 241 RSQSY 245

[Close]

BLAST of MS006060 vs. ExPASy TrEMBL
Match: A0A5D3CXM8 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G00340 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 9.6e-117
Identity = 230/246 (93.50%), Postives = 238/246 (96.75%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSR+RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240
           DEYLSPARSRSIS SRSP DR+DYSRSP+PK+NGRSPREVD  RSRSRS + DSRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

Query: 241 RSQSYR 247
           RS+SYR
Sbjct: 241 RSRSYR 246

[Close]

BLAST of MS006060 vs. ExPASy TrEMBL
Match: A0A1S3AXW0 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=LOC103483786 PE=3 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.1e-116
Identity = 229/245 (93.47%), Postives = 237/245 (96.73%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSR+RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240
           DEYLSPARSRSIS SRSP DR+DYSRSP+PK+NGRSPREVD  RSRSRS + DSRSPSGS
Sbjct: 181 DEYLSPARSRSISHSRSPRDRQDYSRSPTPKDNGRSPREVDNARSRSRSPKGDSRSPSGS 240

Query: 241 RSQSY 246
           RS+SY
Sbjct: 241 RSRSY 245

[Close]

BLAST of MS006060 vs. ExPASy TrEMBL
Match: A0A6J1IQ05 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661 GN=LOC111479462 PE=3 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.4e-115
Identity = 230/245 (93.88%), Postives = 235/245 (95.92%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MARYRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MARYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRRY SYSRSPSPARHDSR+RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240
           DEYLSPARSRSISRS SP DRRDYSRSP+PKENGRSPR VDI RSRSRS RA SRSPSGS
Sbjct: 181 DEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDIARSRSRSPRAASRSPSGS 240

Query: 241 RSQSY 246
           RS+SY
Sbjct: 241 RSRSY 245

[Close]

BLAST of MS006060 vs. ExPASy TrEMBL
Match: A0A6J1GW11 (serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=3662 GN=LOC111457670 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.2e-114
Identity = 228/245 (93.06%), Postives = 234/245 (95.51%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MA+YRSRSRSYSPRRRSR+PPRGRKRYDDDPRDRY ESRS+RDRRSPAPSGLLVRNLPLD
Sbjct: 1   MAKYRSRSRSYSPRRRSRTPPRGRKRYDDDPRDRYRESRSHRDRRSPAPSGLLVRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARPEDLR PFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE
Sbjct: 61  ARPEDLRIPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGAR 180
           IRIVFAEENRKTPQEMRVTSRSSGRS RRRSPARSPRRRY SYSRSPSPARHDSR+RGAR
Sbjct: 121 IRIVFAEENRKTPQEMRVTSRSSGRSSRRRSPARSPRRRYHSYSRSPSPARHDSRSRGAR 180

Query: 181 DEYLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGS 240
           DEYLSPARSRSISRS SP DRRDYSRSP+PKENGRSPR VD  RSRSRS RA SRSPSGS
Sbjct: 181 DEYLSPARSRSISRSHSPRDRRDYSRSPTPKENGRSPRAVDTARSRSRSPRAASRSPSGS 240

Query: 241 RSQSY 246
           RS+SY
Sbjct: 241 RSRSY 245

[Close]

BLAST of MS006060 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 245.0 bits (624), Expect = 6.4e-65
Identity = 154/243 (63.37%), Postives = 175/243 (72.02%), Query Frame = 0


Query: 1   MARYRSRSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLD 60
           MAR RSRSRSYSPR R RSPPR RK YDD   +R  E  S RD  S  PSGLL+RNLPLD
Sbjct: 1   MARARSRSRSYSPRPRDRSPPRERKGYDD---NRLRERPSSRDHESSGPSGLLIRNLPLD 60

Query: 61  ARPEDLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGRE 120
           ARP DLR  FERFGP+KD+YLP+NYYTGEPRGFGFVK+R+AEDAAEA +++NH VIGGRE
Sbjct: 61  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 120

Query: 121 IRIVFAEENRKTPQEMRVTSRSSGR--SYRRRSPARSPRRRYRSYSRSPSPARHDSRNRG 180
           I IVFAEENRKTPQEMR T+ +SGR   Y+R S  RSPRRRYRS+SRS SP R +SR+  
Sbjct: 121 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTS-HRSPRRRYRSHSRSRSPPRRESRHSK 180

Query: 181 ARDE--YLSPARSRSISRSRSPHDRRDYSRSPSPKENGRSPREVDI---------ERSRS 231
            R++  Y    RSRSISRS  P + R+Y        N RSPRE  +          RSRS
Sbjct: 181 VREDDLYSPRRRSRSISRSPLPRNEREYK-----SRNCRSPREERVLTPIRSRCLSRSRS 234

[Close]

BLAST of MS006060 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 158.3 bits (399), Expect = 7.9e-39
Identity = 121/244 (49.59%), Postives = 146/244 (59.84%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPR--GRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLDARPE 66
           R RSY+P     SPPR  GR+     PR R+  SR      S  P+ LLVRNL  D R E
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPRGRFGGSRD-----SDLPTSLLVRNLRHDCRQE 61

Query: 67  DLRTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIV 126
           DLR PFE+FGPVKD+YLP++YYTG+PRGFGF++F    DAAEAK Q++  ++ GRE+ +V
Sbjct: 62  DLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVV 121

Query: 127 FAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGARDEYL 186
           FAEENRK P EMR   R  GRS R +   RSP R    YSRSP P R   R+R     Y 
Sbjct: 122 FAEENRKKPTEMRTRDR-GGRSNRFQDRRRSPPR----YSRSP-PPRRGRRSRSRSRGYN 181

Query: 187 SPARSRSISRSRSPHDRR---DYSRSPSPKENGRSPREVDIERSRSRSLRADSRSPSGSR 246
           SP   R  SRS SP DRR   + S S SP  NG   R     R +S S R+  RS S  +
Sbjct: 182 SPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHS-RSPRRSVSPRK 228

[Close]

BLAST of MS006060 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-38
Identity = 121/249 (48.59%), Postives = 145/249 (58.23%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     SPPRG  R    P  R      Y  R    P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPR----GRYGGRSRDLPTSLLVRNLRHDCRQEDL 61

Query: 67  RTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGARDEYLS 186
           EENRK P EMR   R  GR   RRR+P      RY S SRSP P R  SR+R    +Y S
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPP-----RYYSRSRSPPPRRGRSRSRSG--DYYS 181

Query: 187 PARSRSISRSRSPHD-----RRDYSRSPSPKENGRSPREVDIERSRSRSL-----RADSR 245
           P   R   RS SP +     RR YSRSP+   +G   R +   R +SRSL     R+ SR
Sbjct: 182 PPPRRHHPRSISPREERYDGRRSYSRSPA--SDGSRGRSLTPVRGKSRSLSPSPRRSISR 232

[Close]

BLAST of MS006060 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 152.1 bits (383), Expect = 5.7e-37
Identity = 112/230 (48.70%), Postives = 135/230 (58.70%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     SPPRG  R    P  R      Y  R    P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPR----GRYGGRSRDLPTSLLVRNLRHDCRQEDL 61

Query: 67  RTPFERFGPVKDVYLPKNYYTGEPRGFGFVKFRFAEDAAEAKQQLNHTVIGGREIRIVFA 126
           R  FE+FGPVKD+YLP++YYTG+PRGFGFV+F    DAA+AK  ++  ++ GRE+ +VFA
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 121

Query: 127 EENRKTPQEMRVTSRSSGR-SYRRRSPARSPRRRYRSYSRSPSPARHDSRNRGARDEYLS 186
           EENRK P EMR   R  GR   RRR+P      RY S SRSP P R  SR+R    +Y S
Sbjct: 122 EENRKKPTEMRARERGGGRFRDRRRTPP-----RYYSRSRSPPPRRGRSRSRSG--DYYS 181

Query: 187 PARSRSISRSRSPHD-----RRDYSRSPSPKENGRSPREVDIERSRSRSL 231
           P   R   RS SP +     RR YSRSP+   +G   R +   R +SRSL
Sbjct: 182 PPPRRHHPRSISPREERYDGRRSYSRSPA--SDGSRGRSLTPVRGKSRSL 213

[Close]

BLAST of MS006060 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 144.8 bits (364), Expect = 9.0e-35
Identity = 119/260 (45.77%), Postives = 143/260 (55.00%), Query Frame = 0


Query: 7   RSRSYSPRRRSRSPPRGRKRYDDDPRDRYHESRSYRDRRSPAPSGLLVRNLPLDARPEDL 66
           R RSY+P     SPPRG  R    P  R      Y  R    P+ LLVRNL  D R EDL
Sbjct: 2   RGRSYTP-----SPPRGYGRRGRSPSPR----GRYGGRSRDLPTSLLVRNLRHDCRQEDL 61

Query: 67  RTPFERFGPVKDVYLPKNYYTG------------EPRGFGFVKFRFAEDAAEAKQQLNHT 126
           R  FE+FGPVKD+YLP++YYTG            +PRGFGFV+F    DAA+AK  ++  
Sbjct: 62  RKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGY 121

Query: 127 VIGGREIRIVFAEENRKTPQEMRVTSRSSGRSYRRRSPARSPRRRYRSYSRSPSPARHDS 186
           ++ GRE+ +VFAEENRK P EMR   R  G  +R R   R    RY S SRSP P R  S
Sbjct: 122 LLLGRELTVVFAEENRKKPTEMRARERGGGSRFRDR---RRTPPRYYSRSRSPPPRRGRS 181

Query: 187 RNRGARDEYLSPARSRSISRSRSPHD-----RRDYSRSPSPKENGRSPREVDIERSRSRS 245
           R+R    +Y SP   R   RS SP +     RR YSRSP+   +G   R +   R +SRS
Sbjct: 182 RSRSG--DYYSPPPRRHHPRSISPREERYDGRRSYSRSPA--SDGSRGRSLTPVRGKSRS 241

The following BLAST results are available for this feature:

BLAST of MS006060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137875.1	1.8e-125	100.00	serine/arginine-rich SC35-like splicing factor SCL28 [Momordica charantia]	[more]
XP_038878233.1	8.9e-117	94.29	serine/arginine-rich SC35-like splicing factor SCL28 [Benincasa hispida]	[more]
KAA0049431.1	2.0e-116	93.50	serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo var. makuwa] ...	[more]
XP_008438778.1	4.4e-116	93.47	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis melo]	[more]
XP_004134179.1	1.7e-115	93.47	serine/arginine-rich SC35-like splicing factor SCL28 [Cucumis sativus]	[more]

BLAST of MS006060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PDV2	9.0e-64	63.37	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	1.1e-37	49.59	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q9SEU4	7.2e-37	48.59	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q8L3X8	2.4e-32	45.53	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q8WXF0	3.0e-19	40.00	Serine/arginine-rich splicing factor 12 OS=Homo sapiens OX=9606 GN=SRSF12 PE=2 S...	[more]

BLAST of MS006060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C7W4	8.6e-126	100.00	serine/arginine-rich SC35-like splicing factor SCL28 OS=Momordica charantia OX=3...	[more]
A0A5D3CXM8	9.6e-117	93.50	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXW0	2.1e-116	93.47	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1IQ05	1.4e-115	93.88	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1GW11	1.2e-114	93.06	serine/arginine-rich SC35-like splicing factor SCL28 OS=Cucurbita moschata OX=36...	[more]

BLAST of MS006060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18810.1	6.4e-65	63.37	SC35-like splicing factor 28	[more]
AT3G13570.1	7.9e-39	49.59	SC35-like splicing factor 30A	[more]
AT1G55310.1	5.1e-38	48.59	SC35-like splicing factor 33	[more]
AT1G55310.2	5.7e-37	48.70	SC35-like splicing factor 33	[more]
AT1G55310.3	9.0e-35	45.77	SC35-like splicing factor 33	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 51..124 e-value: 7.3E-5 score: 32.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 51..124 e-value: 3.3E-20 score: 83.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 52..122 e-value: 5.0E-20 score: 71.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 50..128 score: 18.086285
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..140 e-value: 3.2E-28 score: 100.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..246
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..232
None	No IPR available	PANTHER	PTHR23147:SF133	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28	coord: 1..232
IPR000221	Protamine P1	PROSITE	PS00048	PROTAMINE_P1	coord: 2..12
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 47..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS006060.1	MS006060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007283	spermatogenesis
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding