MS006021 (gene) Bitter gourd (TR) v1

Overview
NameMS006021
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionouter envelope membrane protein 7
Locationscaffold254: 3204354 .. 3204539 (-)
RNA-Seq ExpressionMS006021
SyntenyMS006021
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAAGCGGCGAAGTTGAATGCGGCCAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATATCTCAGCCTGCAGCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAGAGCTCTCTCCAACATCCCCATTCGGAGCCCTCAACAATTCCCGAAGACGCCATTTCAAAGCGCCATGAT

mRNA sequence

ATGAAGGAAGCGGCGAAGTTGAATGCGGCCAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATATCTCAGCCTGCAGCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAGAGCTCTCTCCAACATCCCCATTCGGAGCCCTCAACAATTCCCGAAGACGCCATTTCAAAGCGCCATGAT

Coding sequence (CDS)

ATGAAGGAAGCGGCGAAGTTGAATGCGGCCAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATATCTCAGCCTGCAGCTCGTGTTCAAGCCCTACCTCGAGAAAGCTCAGAGCTCTCTCCAACATCCCCATTCGGAGCCCTCAACAATTCCCGAAGACGCCATTTCAAAGCGCCATGAT

Protein sequence

MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPSTIPEDAISKRHD
Homology
BLAST of MS006021 vs. NCBI nr
Match: KAG7018683.1 (hypothetical protein SDJN02_20554, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPSTIPEDAISKR 60
          MKEAAKLNA RSG+VVIGALAFGYLSL LVFKPYLEKAQSSLQHP SEPSTIP+DAIS R
Sbjct: 34 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQSSLQHPDSEPSTIPKDAISNR 93

Query: 61 HD 63
           D
Sbjct: 94 DD 95

BLAST of MS006021 vs. NCBI nr
Match: KAG6582279.1 (hypothetical protein SDJN03_22281, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPSTIPEDAISKR 60
          MKEAAKLNA RSG+VVIGALAFGYLSL LVFKPYLEKAQ SLQHP+SEPSTIP+DAIS R
Sbjct: 11 MKEAAKLNAVRSGVVVIGALAFGYLSLHLVFKPYLEKAQGSLQHPNSEPSTIPKDAISNR 70

Query: 61 HD 63
           D
Sbjct: 71 DD 72

BLAST of MS006021 vs. NCBI nr
Match: KGN57013.1 (hypothetical protein Csa_010432 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 4.8e-19
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPSTIPEDAIS 59
          MKE AKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHP  EPSTIP+DAIS
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAIS 58

BLAST of MS006021 vs. NCBI nr
Match: KAA0049387.1 (hypothetical protein E6C27_scaffold171G006320 [Cucumis melo var. makuwa] >TYK17172.1 hypothetical protein E5676_scaffold434G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 6.5e-16
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPSTIPEDAIS 59
          MKE AKLNAARSGLVVIGALAFGYLSLQ+ FKPYLEKAQS LQHP  EPSTI +DA+S
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQSYLQHPEPEPSTILKDAVS 58

BLAST of MS006021 vs. NCBI nr
Match: XP_042939644.1 (outer envelope membrane protein 7 [Carya illinoinensis] >KAG2727424.1 hypothetical protein I3760_01G157400 [Carya illinoinensis] >KAG6668308.1 hypothetical protein CIPAW_01G161200 [Carya illinoinensis] >KAG6732085.1 hypothetical protein I3842_01G159800 [Carya illinoinensis] >KAG7996299.1 hypothetical protein I3843_01G152500 [Carya illinoinensis])

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-08
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQ--HPHSEPS 51
          MK+ AK+NA RSG+VV+GALAFGYL+LQL FKP+LEKAQ +L+   P S PS
Sbjct: 1  MKQTAKMNAIRSGIVVVGALAFGYLTLQLGFKPFLEKAQETLEKSDPPSPPS 52

BLAST of MS006021 vs. ExPASy TrEMBL
Match: A0A0A0L5N1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-19
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPSTIPEDAIS 59
          MKE AKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHP  EPSTIP+DAIS
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPEPEPSTIPKDAIS 58

BLAST of MS006021 vs. ExPASy TrEMBL
Match: A0A5A7U4W2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00160 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.1e-16
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPSTIPEDAIS 59
          MKE AKLNAARSGLVVIGALAFGYLSLQ+ FKPYLEKAQS LQHP  EPSTI +DA+S
Sbjct: 1  MKETAKLNAARSGLVVIGALAFGYLSLQVGFKPYLEKAQSYLQHPEPEPSTILKDAVS 58

BLAST of MS006021 vs. ExPASy TrEMBL
Match: W9R337 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007349 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.1e-08
Identity = 31/51 (60.78%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPST 52
          M++  K+NA RSG+VV+GA+AFGYL+L L FKP+LEKAQ S++H  S+PS+
Sbjct: 1  MRDRRKMNAMRSGVVVVGAMAFGYLTLYLGFKPFLEKAQLSVEHSQSQPSS 51

BLAST of MS006021 vs. ExPASy TrEMBL
Match: A0A4D9A3A6 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_033849 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.1e-08
Identity = 36/58 (62.07%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPSTIPEDAIS 59
          M+  AK NA RSGLVVIGALAFGYL+L L FKPYLEKAQ   QH  +  S+ P D  +
Sbjct: 1  MRGTAKANAMRSGLVVIGALAFGYLTLHLGFKPYLEKAQLEQQHQSAAASSQPVDTFA 58

BLAST of MS006021 vs. ExPASy TrEMBL
Match: A0A1U7Y866 (uncharacterized protein LOC104242143 OS=Nicotiana sylvestris OX=4096 GN=LOC104242143 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPS 51
          M++  K+ A RSGLVVIGA+AFGYL+LQL+FKP+LEK QS     HSE S
Sbjct: 1  MRDTTKMKALRSGLVVIGAVAFGYLNLQLMFKPFLEKTQSQQALLHSESS 50

BLAST of MS006021 vs. TAIR 10
Match: AT5G19151.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 4.5e-07
Identity = 29/55 (52.73%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 1  MKEAAKLNAARSGLVVIGALAFGYLSLQLVFKPYLEKA-------QSSLQHPHSE 49
          MK     NA RS +VV+G+LAFGYLSL+L +KP+LEKA       QSS QH   +
Sbjct: 1  MKRTVMDNAIRSSVVVLGSLAFGYLSLELGYKPFLEKAEQYERSLQSSQQHQQQD 55

BLAST of MS006021 vs. TAIR 10
Match: AT3G52420.1 (outer envelope membrane protein 7 )

HSP 1 Score: 41.6 bits (96), Expect = 2.7e-04
Identity = 19/50 (38.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 6  KLNAARSGLVVIGALAFGYLSLQLVFKPYLEKAQSSLQHPHSEPSTIPED 56
          K + A+   VV+ A+A G+L++++ FKP+L+K +SS+    S+P+  P+D
Sbjct: 3  KTSGAKQATVVVAAMALGWLAIEIAFKPFLDKFRSSID--KSDPTKDPDD 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7018683.11.3e-1988.71hypothetical protein SDJN02_20554, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6582279.12.1e-1987.10hypothetical protein SDJN03_22281, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN57013.14.8e-1993.10hypothetical protein Csa_010432 [Cucumis sativus][more]
KAA0049387.16.5e-1684.48hypothetical protein E6C27_scaffold171G006320 [Cucumis melo var. makuwa] >TYK171... [more]
XP_042939644.16.5e-0867.31outer envelope membrane protein 7 [Carya illinoinensis] >KAG2727424.1 hypothetic... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5N12.3e-1993.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149930 PE=4 SV=1[more]
A0A5A7U4W23.1e-1684.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
W9R3373.1e-0860.78Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007349 PE=4 SV=1[more]
A0A4D9A3A64.1e-0862.07Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_033849 PE=4 SV=1[more]
A0A1U7Y8664.5e-0764.00uncharacterized protein LOC104242143 OS=Nicotiana sylvestris OX=4096 GN=LOC10424... [more]
Match NameE-valueIdentityDescription
AT5G19151.14.5e-0752.73unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G52420.12.7e-0438.00outer envelope membrane protein 7 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..62
NoneNo IPR availablePANTHERPTHR33982:SF4OS05G0532800 PROTEINcoord: 1..53
IPR038944Outer envelope membrane protein 7-likePANTHERPTHR33982OUTER ENVELOPE MEMBRANE PROTEIN 7-RELATEDcoord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS006021.1MS006021.1mRNA