MS005947 (gene) Bitter gourd (TR) v1

Overview


Name	MS005947
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	photosynthetic NDH subunit of subcomplex B 5, chloroplastic
Location	scaffold254: 2627317 .. 2629165 (-)
RNA-Seq Expression	MS005947
Synteny	MS005947

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCCGCTCTTCCCTTCCCCTTCTATCTTCCAATCCAGTCCCCAAAATCGTCTTCAAATCTTCTGAAATTAGGGCCACGGCGTTCTCGAACAAAAGATTGCTCGGTAAATTGGCGACGAGAAGCGGCTCTCGGCGGCTGAATGCGGCAGGATTGTCCCAGATTGAACCCGATTTAAACGAAGACCCTGTAGATCGTTGGGAAACCAACAGTGTTAGCGCTGTACGAATCGATCTCCTTATGCTCTCTCTGTGCCTCTTATCTTGCTTATTTTGTTATGTTGTTTTAGGTTTTCAAGTTGTGTGTTAGGAATCTGATGAATTTAATTGTTTATACTAATTTTATTTCAAATAAAATAAATGTTAGTTGTTTTTACTTCTTCCCGGAATCATGGGATAGATATGTTGGCTGGTCTGTTTACCATTTGTGTTTTATCTCAGGAAGATTTTGAATATGGAAAATACGATGGACATCACACTTACTTTGAAGGCGAGAAAAAAGGTTAGTTCATTTACATATGTAATTGGGTTTATTTCTATTCCTTGTTTAGAACTTTACCAGAACATTTGAATGCTAGAATTTAGAAGCACTTCTTTCTGTTTTTGATGAATTTTTCTGTTCGGGCTGAGTGGAATTTGGAGGAGGTTCTTGATTATTGGAGCTCGTAGCTCTGTGCATTCGTTGTCCAGATTCCAATTTTACATGCAAATGAGGTAAAAACAGAAATGTAATTGAAATTGTAAGATTGTGAAATTAGAATGCCACGCTTGGAATTGAGCTTTTAAGAAATCTACTTTCGTAAGCTATGGAGTCAAGACTTAACATTTCCCACTGCCATCACAGTTGAGCCAAGGTGAAACAATTTATAATCAATCTCACTCGGAACGTGTTACACATTAGAATAGTGAAAAGTTTGTCATGATATTTAGCTACATGGCCAAAAATCTTTCCTAAAATTCAAGGAATGCTTAAAAAGGTACATTAAAAGTGTTTTTAGAGGGAGAAGTTAACTAAAACTCTCCCCAGAAGTACTTCATTTGCCATAGTCTTAAAAATCATATCAAACTCACTCTTAATCATATAAAAGGTCGAAGGTGGCTCTGATGCAAGATTTTTGTTTTTGTTTTTTTTGTTTTTTGTTTTAGATCTCTTTTAACTTTTAAGTAATAACAATGACTCAGAATGTTCTGTGTGGAGTAGTAACCAACTAATTGTTTTCGTACTAAGGACATTCCTCTCCTTGCAAAATCATCTGGCTAGTAAATGCTGGTGCTGATTAGTGATTACTTCTCACTGGCAATTTCTTCACAGGCACATTCTGGGGAGCCATTGCAGATGATATTGTTGCAGTTGGACCACCAACAGGTTTTCAAGGTAAACAATTGTCACTCACTCTCTGATAACTCAATCCTCTGACTTCAACTCTCAATTAGTATCATATCATCAACATTTGACATTTTTGGTAGGCATCATCTCATGGCTCTTCCTACCAGCAGTTGCTGCTGGAATGTACTTCAATGTACCGGTAATTTTGAACGATATCTCCAAACGCCATTGATTTGCTTGTTTCGTTATTGTTGGGGAGGGGACACTTCGTTCTTATTGGACTGTATTTCAGGGGGAGTATCTGTACATTGGAGCAGCTTTATTTACAATAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAACCACACAACTTCGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTATAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTGAAAAATGATGATATAACAAAGAGA

mRNA sequence

ATGGCGCTCCGCTCTTCCCTTCCCCTTCTATCTTCCAATCCAGTCCCCAAAATCGTCTTCAAATCTTCTGAAATTAGGGCCACGGCGTTCTCGAACAAAAGATTGCTCGGTAAATTGGCGACGAGAAGCGGCTCTCGGCGGCTGAATGCGGCAGGATTGTCCCAGATTGAACCCGATTTAAACGAAGACCCTGTAGATCGTTGGGAAACCAACAGTGTTAGCGCTGAAGATTTTGAATATGGAAAATACGATGGACATCACACTTACTTTGAAGGCGAGAAAAAAGGCACATTCTGGGGAGCCATTGCAGATGATATTGTTGCAGTTGGACCACCAACAGGTTTTCAAGGCATCATCTCATGGCTCTTCCTACCAGCAGTTGCTGCTGGAATGTACTTCAATGTACCGGGGGAGTATCTGTACATTGGAGCAGCTTTATTTACAATAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAACCACACAACTTCGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTATAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTGAAAAATGATGATATAACAAAGAGA

Coding sequence (CDS)

ATGGCGCTCCGCTCTTCCCTTCCCCTTCTATCTTCCAATCCAGTCCCCAAAATCGTCTTCAAATCTTCTGAAATTAGGGCCACGGCGTTCTCGAACAAAAGATTGCTCGGTAAATTGGCGACGAGAAGCGGCTCTCGGCGGCTGAATGCGGCAGGATTGTCCCAGATTGAACCCGATTTAAACGAAGACCCTGTAGATCGTTGGGAAACCAACAGTGTTAGCGCTGAAGATTTTGAATATGGAAAATACGATGGACATCACACTTACTTTGAAGGCGAGAAAAAAGGCACATTCTGGGGAGCCATTGCAGATGATATTGTTGCAGTTGGACCACCAACAGGTTTTCAAGGCATCATCTCATGGCTCTTCCTACCAGCAGTTGCTGCTGGAATGTACTTCAATGTACCGGGGGAGTATCTGTACATTGGAGCAGCTTTATTTACAATAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAACCACACAACTTCGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTATAACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTGAAAAATGATGATATAACAAAGAGA

Protein sequence

MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAVGPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR

Homology

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BLAST of MS005947 vs. NCBI nr
Match: XP_022147272.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Momordica charantia])

HSP 1 Score: 434.5 bits (1116), Expect = 5.3e-118
Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDL 60
           MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDL
Sbjct: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDL 60

Query: 61  NEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAVGPPTGFQGIIS 120
           NEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAVGPPTGFQGIIS
Sbjct: 61  NEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAVGPPTGFQGIIS 120

Query: 121 WLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKL 180
           WLFLPAVAAGMYFN+PGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKL
Sbjct: 121 WLFLPAVAAGMYFNLPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKL 180

Query: 181 ISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 213
           ISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 ISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 212

[Close]

BLAST of MS005947 vs. NCBI nr
Match: KAG7028861.1 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 389.0 bits (998), Expect = 2.5e-104
Identity = 191/223 (85.65%), Postives = 199/223 (89.24%), Query Frame = 0


Query: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLN 60
           MAL SSLP+LS NP+PKI+FKSSEI ATAFSN+           +LLGK A  S  RRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSEISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAV 120
           AAGLS+IEPDLNEDPVDRWETNSVSAEDFEYG YDGHHTYFEGEKKGTFWGAIADDI AV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 213
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 223

[Close]

BLAST of MS005947 vs. NCBI nr
Match: XP_022948649.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata] >XP_022948658.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata])

HSP 1 Score: 388.7 bits (997), Expect = 3.3e-104
Identity = 191/223 (85.65%), Postives = 199/223 (89.24%), Query Frame = 0


Query: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLN 60
           MAL SSLP+LS NP+PKI+FKSS IRATAFSN+           +LLGK A  S  RRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGIRATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAV 120
           AAGLS+IEPDLNEDPVDRWETNSVSAEDFEYG YDGHHTYFEGEKKGTFWGAIADDI AV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 213
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 223

[Close]

BLAST of MS005947 vs. NCBI nr
Match: XP_022974431.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_022974433.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucurbita maxima] >XP_022974434.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima] >XP_023540737.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023540738.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 386.3 bits (991), Expect = 1.7e-103
Identity = 190/223 (85.20%), Postives = 198/223 (88.79%), Query Frame = 0


Query: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLN 60
           MAL SSLP+LS NP+PKI+FKSS I ATAFSN+           +LLGK A  S  RRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAV 120
           AAGLS+IEPDLNEDPVDRWETNSVSAEDFEYG YDGHHTYFEGEKKGTFWGAIADDI AV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 213
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 223

[Close]

BLAST of MS005947 vs. NCBI nr
Match: XP_038878594.1 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 384.8 bits (987), Expect = 4.8e-103
Identity = 189/222 (85.14%), Postives = 199/222 (89.64%), Query Frame = 0


Query: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLN 60
           MA  SSLP+LS NP+PKI+FKSSEI ATAFSN+           +LLG L  RS SRRLN
Sbjct: 1   MAPCSSLPVLSFNPIPKIIFKSSEISATAFSNQTIPVSNGISASKLLGILTRRSLSRRLN 60

Query: 61  AAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAV 120
           AAGLS+IE DLNEDPVDRWETNSVS EDFEYG YDGHHTYFEGEKKGTFWGAIADDI AV
Sbjct: 61  AAGLSEIELDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG+ISWLFLPAVAAGMYFN+PGEYLYIGAA+FTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGVISWLFLPAVAAGMYFNIPGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 212
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKN+DITK
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNNDITK 222

[Close]

BLAST of MS005947 vs. ExPASy Swiss-Prot
Match: Q9FG89 (Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB5 PE=2 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 4.1e-73
Identity = 134/211 (63.51%), Postives = 164/211 (77.73%), Query Frame = 0


Query: 5   SSLPLLSSNPVPKIVFKSSEIRAT-AFSNKRLLGKLATRSGSRRL-NAAGLSQIEPDLNE 64
           +++ +LS   +PK+       R +    N    GK   R    +L +AAGLSQIEPD+NE
Sbjct: 2   ATVTILSPKSIPKVTDSKFGARVSDQIVNVVKCGKSGRRLKLAKLVSAAGLSQIEPDINE 61

Query: 65  DPVDRWETNSVSAEDFEYGKYDGHHTYFEGE-KKGTFWGAIADDIVAVGPPTGFQGIISW 124
           DP+ ++ETNS+  EDF+YG YDG HTY+EGE +KGTFWGAIADDI AV    GFQG+IS 
Sbjct: 62  DPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAVDQTNGFQGLISC 121

Query: 125 LFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLI 184
           +FLPA+A GMYF+ PGEYL+IGAALFT+VFCIIEMDKPDQPHNFEPQIY +ERGARDKLI
Sbjct: 122 MFLPAIALGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQPHNFEPQIYKLERGARDKLI 181

Query: 185 SDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 213
           +DYNTM IW+FN+KYGD+WDFT++ DDI  R
Sbjct: 182 NDYNTMSIWDFNDKYGDVWDFTIEKDDIATR 212

[Close]

BLAST of MS005947 vs. ExPASy TrEMBL
Match: A0A6J1D1X6 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111016268 PE=4 SV=1)

HSP 1 Score: 434.5 bits (1116), Expect = 2.6e-118
Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDL 60
           MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDL
Sbjct: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNKRLLGKLATRSGSRRLNAAGLSQIEPDL 60

Query: 61  NEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAVGPPTGFQGIIS 120
           NEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAVGPPTGFQGIIS
Sbjct: 61  NEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAVGPPTGFQGIIS 120

Query: 121 WLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKL 180
           WLFLPAVAAGMYFN+PGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKL
Sbjct: 121 WLFLPAVAAGMYFNLPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKL 180

Query: 181 ISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 213
           ISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 ISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 212

[Close]

BLAST of MS005947 vs. ExPASy TrEMBL
Match: A0A6J1GAI7 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452262 PE=4 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.6e-104
Identity = 191/223 (85.65%), Postives = 199/223 (89.24%), Query Frame = 0


Query: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLN 60
           MAL SSLP+LS NP+PKI+FKSS IRATAFSN+           +LLGK A  S  RRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGIRATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAV 120
           AAGLS+IEPDLNEDPVDRWETNSVSAEDFEYG YDGHHTYFEGEKKGTFWGAIADDI AV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 213
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 223

[Close]

BLAST of MS005947 vs. ExPASy TrEMBL
Match: A0A6J1IBC3 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473099 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 8.0e-104
Identity = 190/223 (85.20%), Postives = 198/223 (88.79%), Query Frame = 0


Query: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAFSNK-----------RLLGKLATRSGSRRLN 60
           MAL SSLP+LS NP+PKI+FKSS I ATAFSN+           +LLGK A  S  RRLN
Sbjct: 1   MALCSSLPVLSFNPLPKIIFKSSGISATAFSNRSIPGINGISAAKLLGKSARGSRLRRLN 60

Query: 61  AAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAV 120
           AAGLS+IEPDLNEDPVDRWETNSVSAEDFEYG YDGHHTYFEGEKKGTFWGAIADDI AV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSAEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG ISWLFLP VAA MYFNVPGEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGFISWLFLPVVAAAMYFNVPGEYIYIGAAVFTIVFCIIEMDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 213
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 223

[Close]

BLAST of MS005947 vs. ExPASy TrEMBL
Match: A0A5A7U0K2 (Photosynthetic NDH subunit of subcomplex B 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00970 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.2e-103
Identity = 188/222 (84.68%), Postives = 197/222 (88.74%), Query Frame = 0


Query: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAF-----------SNKRLLGKLATRSGSRRLN 60
           MA  SSLP+LS NP+PKI+F SSEI A  F           S+ +LLGKL  RS SRRLN
Sbjct: 1   MASSSSLPVLSFNPIPKIIFGSSEIVAAPFSIQTIQGSNGISSSKLLGKLTRRSLSRRLN 60

Query: 61  AAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAV 120
           AAGLS+IEPDLNEDPVDRWETNSVS EDFEYG YDGHHTYFEGEKKGTFWGAIADDI AV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG+ISWLFLPAVAAGMYFNVPGEYLYIGAA+FTIVFCIIE+DKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 212
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222

[Close]

BLAST of MS005947 vs. ExPASy TrEMBL
Match: A0A1S3AXF4 (photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483655 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.2e-103
Identity = 188/222 (84.68%), Postives = 197/222 (88.74%), Query Frame = 0


Query: 1   MALRSSLPLLSSNPVPKIVFKSSEIRATAF-----------SNKRLLGKLATRSGSRRLN 60
           MA  SSLP+LS NP+PKI+F SSEI A  F           S+ +LLGKL  RS SRRLN
Sbjct: 1   MASSSSLPVLSFNPIPKIIFGSSEIVAAPFSIQTIRGSNGISSSKLLGKLTRRSLSRRLN 60

Query: 61  AAGLSQIEPDLNEDPVDRWETNSVSAEDFEYGKYDGHHTYFEGEKKGTFWGAIADDIVAV 120
           AAGLS+IEPDLNEDPVDRWETNSVS EDFEYG YDGHHTYFEGEKKGTFWGAIADDI AV
Sbjct: 61  AAGLSEIEPDLNEDPVDRWETNSVSPEDFEYGVYDGHHTYFEGEKKGTFWGAIADDIAAV 120

Query: 121 GPPTGFQGIISWLFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQI 180
           GPPTGFQG+ISWLFLPAVAAGMYFNVPGEYLYIGAA+FTIVFCIIE+DKPDQPHNFEPQI
Sbjct: 121 GPPTGFQGLISWLFLPAVAAGMYFNVPGEYLYIGAAIFTIVFCIIEIDKPDQPHNFEPQI 180

Query: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 212
           YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Sbjct: 181 YNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK 222

[Close]

BLAST of MS005947 vs. TAIR 10
Match: AT5G43750.1 (NAD(P)H dehydrogenase 18 )

HSP 1 Score: 275.8 bits (704), Expect = 2.9e-74
Identity = 134/211 (63.51%), Postives = 164/211 (77.73%), Query Frame = 0


Query: 5   SSLPLLSSNPVPKIVFKSSEIRAT-AFSNKRLLGKLATRSGSRRL-NAAGLSQIEPDLNE 64
           +++ +LS   +PK+       R +    N    GK   R    +L +AAGLSQIEPD+NE
Sbjct: 2   ATVTILSPKSIPKVTDSKFGARVSDQIVNVVKCGKSGRRLKLAKLVSAAGLSQIEPDINE 61

Query: 65  DPVDRWETNSVSAEDFEYGKYDGHHTYFEGE-KKGTFWGAIADDIVAVGPPTGFQGIISW 124
           DP+ ++ETNS+  EDF+YG YDG HTY+EGE +KGTFWGAIADDI AV    GFQG+IS 
Sbjct: 62  DPIGQFETNSIEMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAVDQTNGFQGLISC 121

Query: 125 LFLPAVAAGMYFNVPGEYLYIGAALFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLI 184
           +FLPA+A GMYF+ PGEYL+IGAALFT+VFCIIEMDKPDQPHNFEPQIY +ERGARDKLI
Sbjct: 122 MFLPAIALGMYFDAPGEYLFIGAALFTVVFCIIEMDKPDQPHNFEPQIYKLERGARDKLI 181

Query: 185 SDYNTMDIWEFNEKYGDLWDFTVKNDDITKR 213
           +DYNTM IW+FN+KYGD+WDFT++ DDI  R
Sbjct: 182 NDYNTMSIWDFNDKYGDVWDFTIEKDDIATR 212

The following BLAST results are available for this feature:

BLAST of MS005947 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147272.1	5.3e-118	99.53	photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Momordica charantia...	[more]
KAG7028861.1	2.5e-104	85.65	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic, partial [Cucurbita ...	[more]
XP_022948649.1	3.3e-104	85.65	photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucurbita moschata]...	[more]
XP_022974431.1	1.7e-103	85.20	photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbit...	[more]
XP_038878594.1	4.8e-103	85.14	photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida]	[more]

BLAST of MS005947 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FG89	4.1e-73	63.51	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of MS005947 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1X6	2.6e-118	99.53	photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Momordica charant...	[more]
A0A6J1GAI7	1.6e-104	85.65	photosynthetic NDH subunit of subcomplex B 5, chloroplastic OS=Cucurbita moschat...	[more]
A0A6J1IBC3	8.0e-104	85.20	photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 OS=Cucurb...	[more]
A0A5A7U0K2	5.2e-103	84.68	Photosynthetic NDH subunit of subcomplex B 5 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3AXF4	5.2e-103	84.68	photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 OS=Cucumi...	[more]

BLAST of MS005947 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43750.1	2.9e-74	63.51	NAD(P)H dehydrogenase 18	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034569	Photosynthetic NDH subunit of subcomplex B 5, chloroplastic	PANTHER	PTHR36399	PHOTOSYNTHETIC NDH SUBUNIT OF SUBCOMPLEX B 5, CHLOROPLASTIC	coord: 1..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005947.1	MS005947.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0009507	chloroplast