MS005917 (gene) Bitter gourd (TR) v1

Overview
NameMS005917
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase II subunit 1-like
Locationscaffold254: 2409504 .. 2411029 (+)
RNA-Seq ExpressionMS005917
SyntenyMS005917
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATCTTCCTCGATTCGGCCGTACATGGCAACGTCAGGCTGTGGTTGCGCCGCCAGCTCCCGCCGCCGTGCCGCCATCAGTTCCGACCACCCAAACTCTGCAACCTTTCGAACCCAACCTGCCGCCATCGGCTTCTCCTGCGTCTTCCCCTTTGAAAGCATCTCCCGGCCGGCGAGGTCCTTCCGCGTCGCCGAAATACAGAGCTGCCGCCACACGTGTGGGTAGTTCGCCGGCGAAGTCCGCACGATCGCCGCCGGCGTCTCCTGCAACCAAATATTCCGACCGGGGACATGCCCAAACAACCCCACCTCTCTCGCCGGCCAAGTCCCGGCGAACAGCAACGCCGCCACTTTCTCCTCTTGCTCTTCCACGTACCGCAAATGGCGCGCTCCATTCTAGGTATTAAACTACCATCACTAACTTGAAAAAATGTTAAAACATATGAGGCTAAATTTAGATCGAAAAAACAACACCAACTTGAGAGAAAGAACATATTTGAAAAAAGTTTAAAGGACAAATTAGTAAACATCTCAACCAAAATTTGACAGCTCTTCGTATATTTATTTAAAAAATAAAAGAAAGATTTCTTTTACATATTAAAAATTTGATGCAATTCGTAAAAAATGAATACTAATGAAATATTATTCTATATATTAAAATTTTAAAGTATATATACTAGATAGACATAATCTTATTAAAAATTTAGATAATTATAAGAGTACATAAATTCTTATTTTTTTAATGGATGTAGTACATATTTAAATACACACATATTGATACACCAAATCTGTAATTGAATCTACTATTTCTCATTCACGCTCCGTTTTAACACTCTTCTCAGCCTTAAAATTTATTAGATATCTCATAAGTTGTTAAATATTTACCTTATCCTACTGGGATAAGCTTTTAAATTTAAGGATGGTTTAATCGAAAATTTAACCTAAAGTGAGACAATCCATTCTAAATATTAATTACTGTAAAAAAAAGGAAAAAAACAACAACAACAATTCTAAAAATTAATTAGAAAGAAAATTGCTCGAAATCTATGGTAAGTTTAATTTTTTATTTCTTAACACCAGCGTGTTGCCGGAGGTGGAGAAGAAAAGTGTTCTGTACAACAAGACCGTCGAGAAGCCGGCGAAGTCTGGCCGGCCGTCGGAGCACGGCTCCGGTAAGCCGCCGCAGGCGGAGGTTATAAACCTCACCGGACACAACGTAGGCGCCGTCATGGAAATAAATCAGTCCTCCGCCAAACATTCCGCCGGAGAAATCATAAAAAAGAAAGAATCTGAAACGGAATTAGGTGGGGCCCACCACGGAAATGATGAGAGGAAGACAGGGGCAAAAAAGGGATTGCCGGGGACTGCGTTCATGAACAGCAACTTTCAGAGTGTGAACAATTCCGTTCTGTACGACTCGTCGTGCAGCCACCGTGATCCCGGCCTGCATCTCGCCTTCTCCGACACGGCGGACGGCGGCGACGGAGCCATTGTTGACGGTCATAACAAGAATTACAAGCCC

mRNA sequence

ATGGCAAATCTTCCTCGATTCGGCCGTACATGGCAACGTCAGGCTGTGGTTGCGCCGCCAGCTCCCGCCGCCGTGCCGCCATCAGTTCCGACCACCCAAACTCTGCAACCTTTCGAACCCAACCTGCCGCCATCGGCTTCTCCTGCGTCTTCCCCTTTGAAAGCATCTCCCGGCCGGCGAGGTCCTTCCGCGTCGCCGAAATACAGAGCTGCCGCCACACGTGTGGGTAGTTCGCCGGCGAAGTCCGCACGATCGCCGCCGGCGTCTCCTGCAACCAAATATTCCGACCGGGGACATGCCCAAACAACCCCACCTCTCTCGCCGGCCAAGTCCCGGCGAACAGCAACGCCGCCACTTTCTCCTCTTGCTCTTCCACGTACCGCAAATGGCGCGCTCCATTCTAGCGTGTTGCCGGAGGTGGAGAAGAAAAGTGTTCTGTACAACAAGACCGTCGAGAAGCCGGCGAAGTCTGGCCGGCCGTCGGAGCACGGCTCCGGTAAGCCGCCGCAGGCGGAGGTTATAAACCTCACCGGACACAACGTAGGCGCCGTCATGGAAATAAATCAGTCCTCCGCCAAACATTCCGCCGGAGAAATCATAAAAAAGAAAGAATCTGAAACGGAATTAGGTGGGGCCCACCACGGAAATGATGAGAGGAAGACAGGGGCAAAAAAGGGATTGCCGGGGACTGCGTTCATGAACAGCAACTTTCAGAGTGTGAACAATTCCGTTCTGTACGACTCGTCGTGCAGCCACCGTGATCCCGGCCTGCATCTCGCCTTCTCCGACACGGCGGACGGCGGCGACGGAGCCATTGTTGACGGTCATAACAAGAATTACAAGCCC

Coding sequence (CDS)

ATGGCAAATCTTCCTCGATTCGGCCGTACATGGCAACGTCAGGCTGTGGTTGCGCCGCCAGCTCCCGCCGCCGTGCCGCCATCAGTTCCGACCACCCAAACTCTGCAACCTTTCGAACCCAACCTGCCGCCATCGGCTTCTCCTGCGTCTTCCCCTTTGAAAGCATCTCCCGGCCGGCGAGGTCCTTCCGCGTCGCCGAAATACAGAGCTGCCGCCACACGTGTGGGTAGTTCGCCGGCGAAGTCCGCACGATCGCCGCCGGCGTCTCCTGCAACCAAATATTCCGACCGGGGACATGCCCAAACAACCCCACCTCTCTCGCCGGCCAAGTCCCGGCGAACAGCAACGCCGCCACTTTCTCCTCTTGCTCTTCCACGTACCGCAAATGGCGCGCTCCATTCTAGCGTGTTGCCGGAGGTGGAGAAGAAAAGTGTTCTGTACAACAAGACCGTCGAGAAGCCGGCGAAGTCTGGCCGGCCGTCGGAGCACGGCTCCGGTAAGCCGCCGCAGGCGGAGGTTATAAACCTCACCGGACACAACGTAGGCGCCGTCATGGAAATAAATCAGTCCTCCGCCAAACATTCCGCCGGAGAAATCATAAAAAAGAAAGAATCTGAAACGGAATTAGGTGGGGCCCACCACGGAAATGATGAGAGGAAGACAGGGGCAAAAAAGGGATTGCCGGGGACTGCGTTCATGAACAGCAACTTTCAGAGTGTGAACAATTCCGTTCTGTACGACTCGTCGTGCAGCCACCGTGATCCCGGCCTGCATCTCGCCTTCTCCGACACGGCGGACGGCGGCGACGGAGCCATTGTTGACGGTCATAACAAGAATTACAAGCCC

Protein sequence

MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNLPPSASPASSPLKASPGRRGPSASPKYRAAATRVGSSPAKSARSPPASPATKYSDRGHAQTTPPLSPAKSRRTATPPLSPLALPRTANGALHSSVLPEVEKKSVLYNKTVEKPAKSGRPSEHGSGKPPQAEVINLTGHNVGAVMEINQSSAKHSAGEIIKKKESETELGGAHHGNDERKTGAKKGLPGTAFMNSNFQSVNNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVDGHNKNYKP
Homology
BLAST of MS005917 vs. NCBI nr
Match: XP_022147458.1 (vegetative cell wall protein gp1-like [Momordica charantia])

HSP 1 Score: 532.3 bits (1370), Expect = 2.5e-147
Identity = 279/282 (98.94%), Postives = 279/282 (98.94%), Query Frame = 0

Query: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNLPPSASPASSPLKASPGRR 60
           MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNLPPSASPASSPLKASPGRR
Sbjct: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNLPPSASPASSPLKASPGRR 60

Query: 61  GPSASPKYRAAATRVGSSPAKSARSPPASPATKYSDRGHAQTTPPLSPAKSRRTATPPLS 120
           GPSASPKYRAAA RVGSSPAKSARSPPASPATKYSDRGHAQTTPPLSPAKSRRTATPPLS
Sbjct: 61  GPSASPKYRAAAKRVGSSPAKSARSPPASPATKYSDRGHAQTTPPLSPAKSRRTATPPLS 120

Query: 121 PLALPRTANGALHSSVLPEVEKKSVLYNKTVEKPAKSGRPSEHGSGKPPQAEVINLTGHN 180
           PLALPRTANGALHSSVLPEVEKKSVLYNKTVEKPAKSGRPSEHGSGKPPQAEVINLTGHN
Sbjct: 121 PLALPRTANGALHSSVLPEVEKKSVLYNKTVEKPAKSGRPSEHGSGKPPQAEVINLTGHN 180

Query: 181 VGAVMEINQSSAKHSAGEIIKKKESETELGGAHHGNDERKTGAKKGLPGTAFMNSNFQSV 240
           VGAVMEINQSSAKHSAGEIIKKKESETELGGAHHGNDERKTGAKK LPGTAFMNSNFQSV
Sbjct: 181 VGAVMEINQSSAKHSAGEIIKKKESETELGGAHHGNDERKTGAKKELPGTAFMNSNFQSV 240

Query: 241 NNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVDGHNKNYKP 283
           NNSVLYDSSCSHRDPGLHLAFSDTADGG GAIVDGHNKNYKP
Sbjct: 241 NNSVLYDSSCSHRDPGLHLAFSDTADGGGGAIVDGHNKNYKP 282

BLAST of MS005917 vs. NCBI nr
Match: XP_038879417.1 (proline-rich receptor-like protein kinase PERK8 [Benincasa hispida])

HSP 1 Score: 260.0 bits (663), Expect = 2.4e-65
Identity = 172/308 (55.84%), Postives = 202/308 (65.58%), Query Frame = 0

Query: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPS----------VPTTQTLQPFEPNLPPSASP-- 60
           MANLPR GRT QR + VAPP  AAV P+           PT+   QP EP  P  ASP  
Sbjct: 1   MANLPRIGRTRQRPSAVAPPLLAAVQPTAEPKPEISPFAPTSIQTQPIEPTTPAPASPLR 60

Query: 61  ASSPLKASPGRR--GPSASPKYRAAATRVGSSP-AKSARSPPASPATKYSDRGHAQTTPP 120
            S  L  SP ++   P ASPKY  + TRV S P AK+ RSPP SP  KY +  + +TTPP
Sbjct: 61  QSPRLITSPPKKATSPFASPKYGDSLTRVDSPPAAKATRSPPDSPTNKYLETRNGETTPP 120

Query: 121 LSPAKSRRTATPPLSPLALPRTANGALHSSVL-----PEVEKKSVLYNKTVEKPAKSGRP 180
           LSPAKSRRT TPPLSPL LPRT   +   +       P VE K ++YNK VEKP K+ RP
Sbjct: 121 LSPAKSRRTKTPPLSPLTLPRTPVISWDETTALPRTQPVVETKGIVYNKAVEKPTKTDRP 180

Query: 181 SEHGSGKPPQ-----AEVINLTGHNVGAVMEINQSSAKHS-AGEIIKKKESETELGGAHH 240
           SE+GSGKP Q     AEVINL GHNVGAVMEIN+SS  +   GE +K K  ET+ GG HH
Sbjct: 181 SEYGSGKPHQKQQATAEVINLNGHNVGAVMEINKSSDGYRLGGETVKNK--ETKGGGVHH 240

Query: 241 GNDERKTGAKKGLPGTAFMNSNFQSVNNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVD 283
           G+ E+  GAK   P TAFMN+NFQS+NNS+LYDSSC+H DPGLHL+  ++ D GDGA V 
Sbjct: 241 GHKEKNKGAKIVPPVTAFMNTNFQSINNSILYDSSCNHHDPGLHLSLPESVD-GDGATVY 300

BLAST of MS005917 vs. NCBI nr
Match: XP_008437851.1 (PREDICTED: zyxin-like [Cucumis melo] >KAA0048863.1 zyxin-like [Cucumis melo var. makuwa] >TYK20815.1 zyxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 1.3e-60
Identity = 170/302 (56.29%), Postives = 201/302 (66.56%), Query Frame = 0

Query: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNL--PPSASP---ASSPLKA 60
           MANLPRFGR  QR   V PP PAA  P+V     + PF   +  P  ASP   +  PL +
Sbjct: 1   MANLPRFGRARQRLPAVPPPVPAAAQPAVEPRYQILPFATTITTPAPASPRRESPRPLSS 60

Query: 61  SPGR-RGPSASPKYRAAATRVGSSP-AKSARSPPASPATKYSDRGHAQTTPPLSPAKSRR 120
            P +   P ASPKY  + TR+  SP AK+  SPP S   KY +R + +TTPPLSPAKSRR
Sbjct: 61  PPKKATSPFASPKYGDSRTRLDRSPAAKATMSPPDSVRDKYFERRNGETTPPLSPAKSRR 120

Query: 121 TATPPLSPLALPR----TANG-ALHSSVLPEVEKKSVLYNKTVEKPAKSGRPS-EHGSGK 180
             TPPLSPLALPR    T NG      V PEVE K ++YNKTVEKP+KS R S E+GS K
Sbjct: 121 AKTPPLSPLALPRNQVFTGNGTTAQPRVQPEVETKGIVYNKTVEKPSKSNRSSGEYGSSK 180

Query: 181 PPQ----AEVINLTGHNVGAVMEINQSSAKHS-AGEIIKKKESETELGGAH-HGNDERKT 240
             Q     EVI L GHNVGAVMEIN+SS  +   GE +KK E+E ++G  H +G++++KT
Sbjct: 181 SHQKKQKPEVIKLKGHNVGAVMEINKSSTGYRLGGETLKKNETE-DVGDVHGYGHEDKKT 240

Query: 241 GAKKGLPG-TAFMNSNFQSVNNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVDGHNKNY 283
             KK  P  TAFMNSNFQSVNNS+L+DSSC+HRDPGLHLAF D  D GDGAIVDG  K+Y
Sbjct: 241 ETKKKEPPITAFMNSNFQSVNNSLLFDSSCNHRDPGLHLAFPDAVD-GDGAIVDG-QKSY 299

BLAST of MS005917 vs. NCBI nr
Match: XP_004133797.1 (uncharacterized protein LOC101205942 [Cucumis sativus] >KGN56395.1 hypothetical protein Csa_009520 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 3.7e-58
Identity = 162/301 (53.82%), Postives = 201/301 (66.78%), Query Frame = 0

Query: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSV-PTTQTLQPFEPNLPPSASPASSPLKASPGR 60
           MANLPR GRT QR + V PP PAA  P+V P  +T+        P A+  ++P  ASP R
Sbjct: 1   MANLPRLGRTRQRLSSVPPPVPAAAQPAVEPKYETM--------PYATSITTPAPASPRR 60

Query: 61  RGPS--ASPKYRAA---ATRVGSSP-AKSARSPPASPATKYSDRGHAQTTPPLSPAKSRR 120
             P   +SP  +A    A+RV SSP AK+ RSPP S   KY +R + +TTPPL+PAKSR 
Sbjct: 61  ESPRPLSSPSKKATSPFASRVDSSPAAKATRSPPDSIGDKYLERRNGETTPPLTPAKSRP 120

Query: 121 TATPPLSPLALPR----TANG-ALHSSVLPEVEKKSVLYNKTV-EKPAKSGRPSEHGSGK 180
             T PLSPLALPR    T NG      V PEVE K ++YNK   EKP+KS R SEHGSGK
Sbjct: 121 AKTSPLSPLALPRSQVITGNGTTAQPRVQPEVETKGIVYNKAADEKPSKSNRQSEHGSGK 180

Query: 181 PPQAE-----VINLTGHNVGAVMEINQSSAKHS-AGEIIKKKESETELGGAHHGNDERKT 240
               +     V+ L GHNVGAVME+N+SSA +   GE +KKKE+E +     +G++++KT
Sbjct: 181 SVHQKQQKPGVMKLKGHNVGAVMEVNKSSAGYRLGGETLKKKETEDDGDVDGYGHEDKKT 240

Query: 241 GAKKGLPGTAFMNSNFQSVNNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVDGHNKNYK 283
           G KK  P +AFMNSNFQSVNNS+L+DSSC HRDPGLHL+F + ADGG GA+VDG +K+YK
Sbjct: 241 GRKKKPPISAFMNSNFQSVNNSLLFDSSCQHRDPGLHLSFPNAADGG-GAVVDG-DKSYK 291

BLAST of MS005917 vs. NCBI nr
Match: KAG6597060.1 (hypothetical protein SDJN03_10240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 227.3 bits (578), Expect = 1.7e-55
Identity = 159/294 (54.08%), Postives = 189/294 (64.29%), Query Frame = 0

Query: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNLPPSASPASSP-LKASPGR 60
           M+N PRFG + QR +++APP    +P S+P    L P EP  P   S  S P    SP  
Sbjct: 1   MSNFPRFGLSRQRPSLMAPP---VLPTSLPAA-PLDPIEPPKPVLLSRKSPPRWLTSPEE 60

Query: 61  R--GPSASPKYRAAATRVGS-SPAKSARSPPASPATKYSDRGHAQTTPPLSPAKSRRTAT 120
           +   P ASP+Y ++ TRV S  PAK   SPP SPA KY DR  AQT+P  SP++S RT+ 
Sbjct: 61  KPTSPIASPEYGSSVTRVPSPPPAKDQLSPPVSPAKKYPDRWIAQTSPLQSPSRSLRTSP 120

Query: 121 PPLSPLALPRTANGALHSS-----VLPEVEKKSVLYNKTVEKPAKSGRPSEHGSGKPPQ- 180
           PP  P ALP T   A++ +     + PEVEKKS +YNKTVEKPAKS   SE+GSGKP + 
Sbjct: 121 PP-PPFALPPTQFTAVNGTTTQPKIQPEVEKKSFVYNKTVEKPAKSDWTSEYGSGKPHEK 180

Query: 181 ---AEVINLTGHNVGAVMEINQSSAKHSAGEIIKKKESETELGGAHHGNDERKTGAKKGL 240
               E INL GHNVGAVMEI++S+  H  G        ET  GG   GN+E+K   KK +
Sbjct: 181 QKVTEAINLAGHNVGAVMEIDKSTVGHRLG-------GETVRGGVRDGNEEKKKKEKKEV 240

Query: 241 PGTAFMNSNFQSVNNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVDGHNKNYK 282
           P TAFMNSNFQSVNNSVLY SSC+HRDPGLHL F+D AD GDGA VDG  KNYK
Sbjct: 241 PMTAFMNSNFQSVNNSVLYGSSCNHRDPGLHLKFADAAD-GDGATVDG-RKNYK 280

BLAST of MS005917 vs. ExPASy TrEMBL
Match: A0A6J1D1D2 (vegetative cell wall protein gp1-like OS=Momordica charantia OX=3673 GN=LOC111016378 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.2e-147
Identity = 279/282 (98.94%), Postives = 279/282 (98.94%), Query Frame = 0

Query: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNLPPSASPASSPLKASPGRR 60
           MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNLPPSASPASSPLKASPGRR
Sbjct: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNLPPSASPASSPLKASPGRR 60

Query: 61  GPSASPKYRAAATRVGSSPAKSARSPPASPATKYSDRGHAQTTPPLSPAKSRRTATPPLS 120
           GPSASPKYRAAA RVGSSPAKSARSPPASPATKYSDRGHAQTTPPLSPAKSRRTATPPLS
Sbjct: 61  GPSASPKYRAAAKRVGSSPAKSARSPPASPATKYSDRGHAQTTPPLSPAKSRRTATPPLS 120

Query: 121 PLALPRTANGALHSSVLPEVEKKSVLYNKTVEKPAKSGRPSEHGSGKPPQAEVINLTGHN 180
           PLALPRTANGALHSSVLPEVEKKSVLYNKTVEKPAKSGRPSEHGSGKPPQAEVINLTGHN
Sbjct: 121 PLALPRTANGALHSSVLPEVEKKSVLYNKTVEKPAKSGRPSEHGSGKPPQAEVINLTGHN 180

Query: 181 VGAVMEINQSSAKHSAGEIIKKKESETELGGAHHGNDERKTGAKKGLPGTAFMNSNFQSV 240
           VGAVMEINQSSAKHSAGEIIKKKESETELGGAHHGNDERKTGAKK LPGTAFMNSNFQSV
Sbjct: 181 VGAVMEINQSSAKHSAGEIIKKKESETELGGAHHGNDERKTGAKKELPGTAFMNSNFQSV 240

Query: 241 NNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVDGHNKNYKP 283
           NNSVLYDSSCSHRDPGLHLAFSDTADGG GAIVDGHNKNYKP
Sbjct: 241 NNSVLYDSSCSHRDPGLHLAFSDTADGGGGAIVDGHNKNYKP 282

BLAST of MS005917 vs. ExPASy TrEMBL
Match: A0A5A7TZ24 (Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00760 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 6.5e-61
Identity = 170/302 (56.29%), Postives = 201/302 (66.56%), Query Frame = 0

Query: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNL--PPSASP---ASSPLKA 60
           MANLPRFGR  QR   V PP PAA  P+V     + PF   +  P  ASP   +  PL +
Sbjct: 1   MANLPRFGRARQRLPAVPPPVPAAAQPAVEPRYQILPFATTITTPAPASPRRESPRPLSS 60

Query: 61  SPGR-RGPSASPKYRAAATRVGSSP-AKSARSPPASPATKYSDRGHAQTTPPLSPAKSRR 120
            P +   P ASPKY  + TR+  SP AK+  SPP S   KY +R + +TTPPLSPAKSRR
Sbjct: 61  PPKKATSPFASPKYGDSRTRLDRSPAAKATMSPPDSVRDKYFERRNGETTPPLSPAKSRR 120

Query: 121 TATPPLSPLALPR----TANG-ALHSSVLPEVEKKSVLYNKTVEKPAKSGRPS-EHGSGK 180
             TPPLSPLALPR    T NG      V PEVE K ++YNKTVEKP+KS R S E+GS K
Sbjct: 121 AKTPPLSPLALPRNQVFTGNGTTAQPRVQPEVETKGIVYNKTVEKPSKSNRSSGEYGSSK 180

Query: 181 PPQ----AEVINLTGHNVGAVMEINQSSAKHS-AGEIIKKKESETELGGAH-HGNDERKT 240
             Q     EVI L GHNVGAVMEIN+SS  +   GE +KK E+E ++G  H +G++++KT
Sbjct: 181 SHQKKQKPEVIKLKGHNVGAVMEINKSSTGYRLGGETLKKNETE-DVGDVHGYGHEDKKT 240

Query: 241 GAKKGLPG-TAFMNSNFQSVNNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVDGHNKNY 283
             KK  P  TAFMNSNFQSVNNS+L+DSSC+HRDPGLHLAF D  D GDGAIVDG  K+Y
Sbjct: 241 ETKKKEPPITAFMNSNFQSVNNSLLFDSSCNHRDPGLHLAFPDAVD-GDGAIVDG-QKSY 299

BLAST of MS005917 vs. ExPASy TrEMBL
Match: A0A1S3AV38 (zyxin-like OS=Cucumis melo OX=3656 GN=LOC103483158 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 6.5e-61
Identity = 170/302 (56.29%), Postives = 201/302 (66.56%), Query Frame = 0

Query: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNL--PPSASP---ASSPLKA 60
           MANLPRFGR  QR   V PP PAA  P+V     + PF   +  P  ASP   +  PL +
Sbjct: 1   MANLPRFGRARQRLPAVPPPVPAAAQPAVEPRYQILPFATTITTPAPASPRRESPRPLSS 60

Query: 61  SPGR-RGPSASPKYRAAATRVGSSP-AKSARSPPASPATKYSDRGHAQTTPPLSPAKSRR 120
            P +   P ASPKY  + TR+  SP AK+  SPP S   KY +R + +TTPPLSPAKSRR
Sbjct: 61  PPKKATSPFASPKYGDSRTRLDRSPAAKATMSPPDSVRDKYFERRNGETTPPLSPAKSRR 120

Query: 121 TATPPLSPLALPR----TANG-ALHSSVLPEVEKKSVLYNKTVEKPAKSGRPS-EHGSGK 180
             TPPLSPLALPR    T NG      V PEVE K ++YNKTVEKP+KS R S E+GS K
Sbjct: 121 AKTPPLSPLALPRNQVFTGNGTTAQPRVQPEVETKGIVYNKTVEKPSKSNRSSGEYGSSK 180

Query: 181 PPQ----AEVINLTGHNVGAVMEINQSSAKHS-AGEIIKKKESETELGGAH-HGNDERKT 240
             Q     EVI L GHNVGAVMEIN+SS  +   GE +KK E+E ++G  H +G++++KT
Sbjct: 181 SHQKKQKPEVIKLKGHNVGAVMEINKSSTGYRLGGETLKKNETE-DVGDVHGYGHEDKKT 240

Query: 241 GAKKGLPG-TAFMNSNFQSVNNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVDGHNKNY 283
             KK  P  TAFMNSNFQSVNNS+L+DSSC+HRDPGLHLAF D  D GDGAIVDG  K+Y
Sbjct: 241 ETKKKEPPITAFMNSNFQSVNNSLLFDSSCNHRDPGLHLAFPDAVD-GDGAIVDG-QKSY 299

BLAST of MS005917 vs. ExPASy TrEMBL
Match: A0A0A0L320 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119300 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.8e-58
Identity = 162/301 (53.82%), Postives = 201/301 (66.78%), Query Frame = 0

Query: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSV-PTTQTLQPFEPNLPPSASPASSPLKASPGR 60
           MANLPR GRT QR + V PP PAA  P+V P  +T+        P A+  ++P  ASP R
Sbjct: 1   MANLPRLGRTRQRLSSVPPPVPAAAQPAVEPKYETM--------PYATSITTPAPASPRR 60

Query: 61  RGPS--ASPKYRAA---ATRVGSSP-AKSARSPPASPATKYSDRGHAQTTPPLSPAKSRR 120
             P   +SP  +A    A+RV SSP AK+ RSPP S   KY +R + +TTPPL+PAKSR 
Sbjct: 61  ESPRPLSSPSKKATSPFASRVDSSPAAKATRSPPDSIGDKYLERRNGETTPPLTPAKSRP 120

Query: 121 TATPPLSPLALPR----TANG-ALHSSVLPEVEKKSVLYNKTV-EKPAKSGRPSEHGSGK 180
             T PLSPLALPR    T NG      V PEVE K ++YNK   EKP+KS R SEHGSGK
Sbjct: 121 AKTSPLSPLALPRSQVITGNGTTAQPRVQPEVETKGIVYNKAADEKPSKSNRQSEHGSGK 180

Query: 181 PPQAE-----VINLTGHNVGAVMEINQSSAKHS-AGEIIKKKESETELGGAHHGNDERKT 240
               +     V+ L GHNVGAVME+N+SSA +   GE +KKKE+E +     +G++++KT
Sbjct: 181 SVHQKQQKPGVMKLKGHNVGAVMEVNKSSAGYRLGGETLKKKETEDDGDVDGYGHEDKKT 240

Query: 241 GAKKGLPGTAFMNSNFQSVNNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVDGHNKNYK 283
           G KK  P +AFMNSNFQSVNNS+L+DSSC HRDPGLHL+F + ADGG GA+VDG +K+YK
Sbjct: 241 GRKKKPPISAFMNSNFQSVNNSLLFDSSCQHRDPGLHLSFPNAADGG-GAVVDG-DKSYK 291

BLAST of MS005917 vs. ExPASy TrEMBL
Match: A0A6J1GHE5 (sulfated surface glycoprotein 185-like OS=Cucurbita moschata OX=3662 GN=LOC111454206 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 158/300 (52.67%), Postives = 187/300 (62.33%), Query Frame = 0

Query: 1   MANLPRFGRTWQRQAVVAPPAPAAVPPSVPTTQTLQPFEPNLPPSASPASSPLKASPGRR 60
           M+N PRFG + QR ++ APP      P+       QPF      S  PA  P        
Sbjct: 1   MSNFPRFGLSRQRPSMAAPPVLPTTLPAAELKPETQPFYKR-SQSLQPAEKP-------T 60

Query: 61  GPSASPKYRAAATRVGS-SPAKSARSPPASPATKYSDRGHAQTTPPLSPAKSRRTA-TPP 120
            P ASPKY  + TRV S  P K   SPP SPA KY DR  +QT+P  SP++S RT+  PP
Sbjct: 61  SPIASPKYGPSVTRVPSPPPPKDELSPPVSPAKKYPDR-LSQTSPLQSPSRSLRTSPPPP 120

Query: 121 LSPLALPRTANGALHSS-----VLPEVEKKSVLYNKTVEKPAKSGRPSEHGSGKPPQ--- 180
             PLALP T   A++ +     + PEVEKKS++YNKTVEK  KS RPSE+GSGKP +   
Sbjct: 121 PPPLALPPTQFTAVNETTTQPRIQPEVEKKSIVYNKTVEKLVKSDRPSEYGSGKPYEKQK 180

Query: 181 -AEVINLTGHNVGAVMEINQSSAKHS-AGEIIKKKESETELGGAHHGNDE-------RKT 240
             E INL GHNVGAVMEI++SS  H   GE ++K E+E   GG   GN+E       +K 
Sbjct: 181 AVESINLAGHNVGAVMEIDKSSVGHRLGGETVRKNETE---GGGRDGNEEKKKEEKKKKE 240

Query: 241 GAKKGLPGTAFMNSNFQSVNNSVLYDSSCSHRDPGLHLAFSDTADGGDGAIVDGHNKNYK 282
             KK +P TAFMNSNFQSVNNSVLYDSSCSHRDPGLHL F+D AD GDGA VDG  K+YK
Sbjct: 241 KKKKNVPMTAFMNSNFQSVNNSVLYDSSCSHRDPGLHLKFADAAD-GDGAAVDG-RKSYK 286

BLAST of MS005917 vs. TAIR 10
Match: AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 8.3e-08
Identity = 93/331 (28.10%), Postives = 132/331 (39.88%), Query Frame = 0

Query: 12  QRQAVVAPPAPAAVPPSVPTTQTLQPFEPNLPPS--ASPASSPLKASPGRRGPSASPKYR 71
           Q+Q  + PP   A P S P  Q   P+  + PPS   SP + P  A+P    P +S    
Sbjct: 69  QQQQPLTPPRQKAPPTSPP--QERSPY--HSPPSRHMSPPTPPKAATPPPPPPRSSYTSP 128

Query: 72  AAATRVGSS-PAKSARSPPASPATKYSDRGHAQTTPPLSPAKSRRTATPP--LSPLALPR 131
            +   V  + P +   SPP+   +  S    +  T   S +++ R A  P  LSP +LP 
Sbjct: 129 PSPKEVQEALPPRKPNSPPSPAHSSRSTTSESVKTRSPSESENHRKAPSPRVLSPYSLPA 188

Query: 132 TANGALHSSVLPEVEKKSVL---------------------------------YNKTV-- 191
           +    LHS    E  +K++L                                 YN+    
Sbjct: 189 S---LLHSE--RETTQKNILTAEKTSQTHETNHHNQNHNHDYNQNHNYNQNHSYNQNQNH 248

Query: 192 --EKPAKSGR-PSEHGSGKPPQAEVINLTGHNVGAVMEI--------------NQSSAKH 251
               P K  R PS   S       VI + G N GAVMEI              + S   H
Sbjct: 249 QGNNPKKMHRQPSSSDSENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSGTHSSRVSH 308

Query: 252 SAGEIIKKKESETELGGAHHGNDERKT------GAKKGLPGTAFMNSNFQSVNNSVLYDS 280
             GE  ++ +S +    +  G  ++KT           LP  AFMNSN Q +NNS++Y+S
Sbjct: 309 GTGEKGRRLQSSSS-SSSDEGEGKKKTTKNVPNKGNSNLPMKAFMNSNVQMINNSIVYNS 368

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022147458.12.5e-14798.94vegetative cell wall protein gp1-like [Momordica charantia][more]
XP_038879417.12.4e-6555.84proline-rich receptor-like protein kinase PERK8 [Benincasa hispida][more]
XP_008437851.11.3e-6056.29PREDICTED: zyxin-like [Cucumis melo] >KAA0048863.1 zyxin-like [Cucumis melo var.... [more]
XP_004133797.13.7e-5853.82uncharacterized protein LOC101205942 [Cucumis sativus] >KGN56395.1 hypothetical ... [more]
KAG6597060.11.7e-5554.08hypothetical protein SDJN03_10240, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D1D21.2e-14798.94vegetative cell wall protein gp1-like OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A5A7TZ246.5e-6156.29Zyxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00760 PE=... [more]
A0A1S3AV386.5e-6156.29zyxin-like OS=Cucumis melo OX=3656 GN=LOC103483158 PE=4 SV=1[more]
A0A0A0L3201.8e-5853.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119300 PE=4 SV=1[more]
A0A6J1GHE51.0e-5352.67sulfated surface glycoprotein 185-like OS=Cucurbita moschata OX=3662 GN=LOC11145... [more]
Match NameE-valueIdentityDescription
AT2G46630.18.3e-0828.10unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..114
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..282
NoneNo IPR availablePANTHERPTHR33472OS01G0106600 PROTEINcoord: 169..265
NoneNo IPR availablePANTHERPTHR33472:SF1EXTENSIN-RELATEDcoord: 169..265

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005917.1MS005917.1mRNA