MS005903 (gene) Bitter gourd (TR) v1

Overview
NameMS005903
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionKrueppel-like factor
Locationscaffold254: 2338002 .. 2338250 (-)
RNA-Seq ExpressionMS005903
SyntenyMS005903
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAAGAAGCAAAAGACCCTTTCAAGGGAGTTGATTGGAAAGCCGTGGGTGGCGATATGCAAAAAGATCCCAGCTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATCAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCCTCTGCCATTGCATTCTATGGGGCCTTTATTGCAGGTGGAATTGGTGCTGGGATGCTGGTGGAGATCTGGATAAATGATAAAGTTAAA

mRNA sequence

ATGGGAGAAGAAGCAAAAGACCCTTTCAAGGGAGTTGATTGGAAAGCCGTGGGTGGCGATATGCAAAAAGATCCCAGCTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATCAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCCTCTGCCATTGCATTCTATGGGGCCTTTATTGCAGGTGGAATTGGTGCTGGGATGCTGGTGGAGATCTGGATAAATGATAAAGTTAAA

Coding sequence (CDS)

ATGGGAGAAGAAGCAAAAGACCCTTTCAAGGGAGTTGATTGGAAAGCCGTGGGTGGCGATATGCAAAAAGATCCCAGCTCTACAAACATTATAAAGAAAAGGCGTCCAACAAAAATCAGGCAAATTCCAGATTATTATTTTCTTCCTAGAAGATCCCTTCCCTCTGCCATTGCATTCTATGGGGCCTTTATTGCAGGTGGAATTGGTGCTGGGATGCTGGTGGAGATCTGGATAAATGATAAAGTTAAA

Protein sequence

MGEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYGAFIAGGIGAGMLVEIWINDKVK
Homology
BLAST of MS005903 vs. NCBI nr
Match: XP_023522177.1 (uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.2 bits (404), Expect = 7.5e-36
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0

Query: 1  MGEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EEAKDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GAFIAGGIGAGMLVEIWINDKVK 84
          GA IAGGIGAGMLVEIWINDKVK
Sbjct: 61 GACIAGGIGAGMLVEIWINDKVK 83

BLAST of MS005903 vs. NCBI nr
Match: XP_022942020.1 (uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothetical protein SDJN03_10245, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028536.1 hypothetical protein SDJN02_09717 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.9 bits (398), Expect = 3.7e-35
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 0

Query: 1  MGEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EEAKDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GAFIAGGIGAGMLVEIWINDKVK 84
          GA IAGGIGAGMLVEIWI DKVK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVK 83

BLAST of MS005903 vs. NCBI nr
Match: XP_004133805.1 (uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical protein Csa_009724 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 4.9e-35
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 2  GEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
          G E KDP KGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 11 GVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 70

Query: 62 AFIAGGIGAGMLVEIWINDKVK 84
          A IAGGIGAGMLVEIWINDK+K
Sbjct: 71 ACIAGGIGAGMLVEIWINDKIK 92

BLAST of MS005903 vs. NCBI nr
Match: XP_022975548.1 (uncharacterized protein LOC111475080 [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 3.2e-34
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MGEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EEAKDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSL S +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60

Query: 61 GAFIAGGIGAGMLVEIWINDKVK 84
          GA IAGGIGAGMLVEIWI DKVK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVK 83

BLAST of MS005903 vs. NCBI nr
Match: XP_008437869.1 (PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 uncharacterized protein E6C27_scaffold171G00910 [Cucumis melo var. makuwa] >TYK20827.1 uncharacterized protein E5676_scaffold291G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 4.1e-34
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 2  GEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
          G E KDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR LP  +AFYG
Sbjct: 11 GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70

Query: 62 AFIAGGIGAGMLVEIWINDKVK 84
          A IAGGIGAGMLVE+WINDK+K
Sbjct: 71 ACIAGGIGAGMLVEMWINDKIK 92

BLAST of MS005903 vs. ExPASy TrEMBL
Match: A0A6J1FVE8 (uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC111447184 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35
Identity = 74/83 (89.16%), Postives = 78/83 (93.98%), Query Frame = 0

Query: 1  MGEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EEAKDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSLPS +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLPSVLAFY 60

Query: 61 GAFIAGGIGAGMLVEIWINDKVK 84
          GA IAGGIGAGMLVEIWI DKVK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVK 83

BLAST of MS005903 vs. ExPASy TrEMBL
Match: A0A0A0L8I7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.4e-35
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0

Query: 2  GEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
          G E KDP KGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPS +AFYG
Sbjct: 11 GVEQKDPLKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSVMAFYG 70

Query: 62 AFIAGGIGAGMLVEIWINDKVK 84
          A IAGGIGAGMLVEIWINDK+K
Sbjct: 71 ACIAGGIGAGMLVEIWINDKIK 92

BLAST of MS005903 vs. ExPASy TrEMBL
Match: A0A6J1IJJ2 (uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MGEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFY 60
          M EEAKDPFKGVDWKAVGGDMQKDPSS NI+KKRRPTK+RQIP+YYFLPRRSL S +AFY
Sbjct: 1  MAEEAKDPFKGVDWKAVGGDMQKDPSSINILKKRRPTKVRQIPEYYFLPRRSLSSVLAFY 60

Query: 61 GAFIAGGIGAGMLVEIWINDKVK 84
          GA IAGGIGAGMLVEIWI DKVK
Sbjct: 61 GACIAGGIGAGMLVEIWIKDKVK 83

BLAST of MS005903 vs. ExPASy TrEMBL
Match: A0A5D3DB39 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00890 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.0e-34
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 2  GEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
          G E KDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR LP  +AFYG
Sbjct: 11 GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70

Query: 62 AFIAGGIGAGMLVEIWINDKVK 84
          A IAGGIGAGMLVE+WINDK+K
Sbjct: 71 ACIAGGIGAGMLVEMWINDKIK 92

BLAST of MS005903 vs. ExPASy TrEMBL
Match: A0A1S3AV52 (uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.0e-34
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 2  GEEAKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRSLPSAIAFYG 61
          G E KDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRR LP  +AFYG
Sbjct: 11 GVEQKDPFKGVDWKAVGGDMQKDPSSTNIIKKRRPTKIRQIPDYYFLPRRPLPYVMAFYG 70

Query: 62 AFIAGGIGAGMLVEIWINDKVK 84
          A IAGGIGAGMLVE+WINDK+K
Sbjct: 71 ACIAGGIGAGMLVEMWINDKIK 92

BLAST of MS005903 vs. TAIR 10
Match: AT5G16950.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-14
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 0

Query: 3  EEAKDPFKGVDWKAVGGDMQKDPSSTNI-----IKKRRPTKIRQIPDYYFLPRRSLPSAI 62
          E AKDP+KG +W     +  K P+++ +      +K+ P  +    + YFLPR+  P A+
Sbjct: 4  EGAKDPWKGEEW-GTENEKTKKPTTSGVKTVTRARKQIPRGLEDKYEAYFLPRKPWPRAL 63

Query: 63 AFYGAFIAGGIGAGMLVEIWINDKVK 84
          A+YG+FI GGIGAGM++E WIN KVK
Sbjct: 64 AYYGSFILGGIGAGMVIEAWINKKVK 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023522177.17.5e-3690.36uncharacterized protein LOC111786056 [Cucurbita pepo subsp. pepo][more]
XP_022942020.13.7e-3589.16uncharacterized protein LOC111447184 [Cucurbita moschata] >KAG6597065.1 hypothet... [more]
XP_004133805.14.9e-3591.46uncharacterized protein LOC101207877 [Cucumis sativus] >KGN56411.1 hypothetical ... [more]
XP_022975548.13.2e-3487.95uncharacterized protein LOC111475080 [Cucurbita maxima][more]
XP_008437869.14.1e-3489.02PREDICTED: uncharacterized protein LOC103483172 [Cucumis melo] >KAA0048876.1 unc... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FVE81.8e-3589.16uncharacterized protein LOC111447184 OS=Cucurbita moschata OX=3662 GN=LOC1114471... [more]
A0A0A0L8I72.4e-3591.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119440 PE=4 SV=1[more]
A0A6J1IJJ21.5e-3487.95uncharacterized protein LOC111475080 OS=Cucurbita maxima OX=3661 GN=LOC111475080... [more]
A0A5D3DB392.0e-3489.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AV522.0e-3489.02uncharacterized protein LOC103483172 OS=Cucumis melo OX=3656 GN=LOC103483172 PE=... [more]
Match NameE-valueIdentityDescription
AT5G16950.11.0e-1444.19unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR36797OS01G0258600 PROTEINcoord: 3..83
NoneNo IPR availablePANTHERPTHR36797:SF4SUBFAMILY NOT NAMEDcoord: 3..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005903.1MS005903.1mRNA