MS005896 (gene) Bitter gourd (TR) v1

Overview


Name	MS005896
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	CCHC-type domain-containing protein
Location	scaffold254: 2284036 .. 2286741 (+)
RNA-Seq Expression	MS005896
Synteny	MS005896

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCCTGAGACCCGGCGGAGAATCGAGGAAACGGTGATTGACGTATTGCAGAAATCGAACATGGAAGAGATGACGGAGTTCAAAGTTCGAGCCGCGGCCGCAGAACGGCTCGGAATCGATCTCTCCGGAATGGAATGCAAGCGGGTGGTGAGGAACGTGGTCGATAAATTTTTACTTTCTATCGTGGAGCACGAGGACAAGGGCAAGGAGGAAGGGACTGGCCCTACTGCTCCTGACCACGCTAAAGCGGTGGTGCAGGAGATAATCTCCAAGAAGGAGATCAACGATGATGGTGCCCGTCTGATTTGCAAGGTAAAGGCAATGCCCTTTATTATGATTCCTGAGAAAAAAAACATGTGAATTTGAAAGGGGATAATTTGGAATTGTGCATATATCTGGTAAACTTACTAATTTAACTTCAGTTCAATGGAGCTAGTTGGCTTAGTTTAAATCTGCACTATGACATTATACAATATTGGTTGGTCTGTTCTGTTCTAGAATGCTTCCAAAGCTGGTTATTTCTACCTAAGTAAATTGAAAATTATCTATGTTTCTATTGCTAGATTGTTTTAAATTCTTTGTTCATAATCTGCACTATGACATTATATAATATTGGTTGTCCTGTTCTTTGTTCATGAAATTCAGGTATGCCTTCTCTGGCATTTCTGCACTATGATGTAAATTGTAGGCTCACCTATATTTGTGATTGTAATATTTAAAGAAACGATCATCCGAACAACACCTATATGTAATTAAAGAAACGATTATTGTAATATTTAAGCACTACGTCCTCTCTCTCTCTCTCACACACACTCACACACAACGGTTGGGTTGTTAAAATTATCAATTGCAGATTTTACCCAATGTGCTACATGATCCCCCTTGATTCTATTTGCAATTTCGTCGTTTGACAGCTAAAGTTTTTTGGTTTATTTCAGTTATCTGAAAACAGGAATGTGACAATTCATGATTTTAGAGGGAGAACTTTGGTATCGATTAGGCAGTATTATGAAAAAGGTGGAAAACAACTTCCTAGTGCTAAAGGTGGGCATTATGCATTGGTCTCTTCCTTTCATCTTATGGTGAATCTTCTTATTTTGCCCTGACACACCCTAACACATTTGGCTGAGGTGATATATTGGAAAATTTCTGGGAACTCGATTCTCTCTTACCATGTGAGTTCCGTTAATCTCGTTTACGTTCCCTTTTTCTTTGTTCACCTTTTACTTATGCATAGGGGGTGGGTTGAGAGTGCCTTGCTTGCATCTTTAACTCTTAACTATGTAAATCTAGATTAATTAACCACGATTTTGTATGACTCCAGCTGATATCAATTTTGATTTTGACCTGTTGGGAGTTTCTTCTCATGGGTCCAAACTACCAACCCCATTCGTAGTCCTATACGCCCCACCTTTTTTCATTTTAATGATGAATATTTGTATTGATTTTTTCCGTACTGAATTTTTGTTGCTAGGAATCAGCTTGCTGACTGAACAATGGGCGGCCCTTAGGAGTAGTATTCCTGCTATAGAGGAAGCTATTTTGCAGATGAAAAAAAGATTAAGGTGAGAAACCATGTTGATATTCTTTGGCAGTACTGTTCTTGAACCTGCTAGTAACAGATCATCAAATTTATTTCATTGACAAGAAAACTTTAAAGTTCCATACTAGGTTTTCAGGTGCTAGTGTCCAAATGTAGATCCCAAATAGAATTTTGTCTTGATATTTCCACTTATTGAGTTGCCTTGTTGGAGGATTCAAATTACATGACAATAGGTATATAGTTGAAATATCTGACTATTACTTATATCATGTAGATTTCGACATGATGCTGAAAAAATTGATGCTGTCTCAGATTCCACAACTGAGGTTACTCCTCCAAAATTTCCTTTTGAAATTATTCGGTTTGATGGAAAAAACTACCACGTATGGGCACGTCAGATGGAGTTTCTCCTGCAGCACTTAAAGATTGCTTATGTACTTTTTGATTCATGCCCTAGTGCTGTTCTTGGGCCAGGATCAAGCTCTGGAAATGCTGCTCAGTCCATGGCCGCTGAACAGAAATGGATGAATGATGACCACATGTGTCGCCACAACATTCTGAACTCCCTCTCCGATAGTCTTTTTCATCAATACACAAAGAGAACAATGAGTGCCCGAGAACTCTGGGAGGAGCTAAAATTGCTTTATCTTTTTGAAGGATTTGGCACCAAGAGAACTCAAGTAGAAAAATATGTGGAATTCAGGTTGGCCGAGGAGAAGTCAATATTAGAACAAGTTCAAGAACTTAATAGCATTTCTGATTCCATTGTAGCTGCTGGAATGCGGATTGACGAGGATTTTCACGTTAGTGTCATTATGTCAAAGCTTCCTTCTTCTTGGAAGAATGTGTGGATGAAGTTAATGCAAGAGGAGCCTCTTCCCCTTTGGAAGTTGATGGATCGATTGAGGATTGAAGAAGAACTACGAACACAACAAAACTCACATCTCTCAGGAGCGTCTTCTAATCCAGTAGACCGACATCCTGCCCCGGATCGCATTTCAAAGATGAGAGACCCAAAGCTCACAAGCCCACAGTTCAAGAGAAAGGAAAGGCAAGTGGATAACATGCCTTTACTCTGCTTTGATTGTGGCAAGAAAGGGCATATATCTCGAAATTGTCCGAGTAGGAAGGTCGATAATGAAGTTACTAGGGAAAGAAGA

mRNA sequence

ATGGACCCTGAGACCCGGCGGAGAATCGAGGAAACGGTGATTGACGTATTGCAGAAATCGAACATGGAAGAGATGACGGAGTTCAAAGTTCGAGCCGCGGCCGCAGAACGGCTCGGAATCGATCTCTCCGGAATGGAATGCAAGCGGGTGGTGAGGAACGTGGTCGATAAATTTTTACTTTCTATCGTGGAGCACGAGGACAAGGGCAAGGAGGAAGGGACTGGCCCTACTGCTCCTGACCACGCTAAAGCGGTGGTGCAGGAGATAATCTCCAAGAAGGAGATCAACGATGATGGTGCCCGTCTGATTTGCAAGTTATCTGAAAACAGGAATGTGACAATTCATGATTTTAGAGGGAGAACTTTGGTATCGATTAGGCAGTATTATGAAAAAGGTGGAAAACAACTTCCTAGTGCTAAAGGAATCAGCTTGCTGACTGAACAATGGGCGGCCCTTAGGAGTAGTATTCCTGCTATAGAGGAAGCTATTTTGCAGATGAAAAAAAGATTAAGATTTCGACATGATGCTGAAAAAATTGATGCTGTCTCAGATTCCACAACTGAGGTTACTCCTCCAAAATTTCCTTTTGAAATTATTCGGTTTGATGGAAAAAACTACCACGTATGGGCACGTCAGATGGAGTTTCTCCTGCAGCACTTAAAGATTGCTTATGTACTTTTTGATTCATGCCCTAGTGCTGTTCTTGGGCCAGGATCAAGCTCTGGAAATGCTGCTCAGTCCATGGCCGCTGAACAGAAATGGATGAATGATGACCACATGTGTCGCCACAACATTCTGAACTCCCTCTCCGATAGTCTTTTTCATCAATACACAAAGAGAACAATGAGTGCCCGAGAACTCTGGGAGGAGCTAAAATTGCTTTATCTTTTTGAAGGATTTGGCACCAAGAGAACTCAAGTAGAAAAATATGTGGAATTCAGGTTGGCCGAGGAGAAGTCAATATTAGAACAAGTTCAAGAACTTAATAGCATTTCTGATTCCATTGTAGCTGCTGGAATGCGGATTGACGAGGATTTTCACGTTAGTGTCATTATGTCAAAGCTTCCTTCTTCTTGGAAGAATGTGTGGATGAAGTTAATGCAAGAGGAGCCTCTTCCCCTTTGGAAGTTGATGGATCGATTGAGGATTGAAGAAGAACTACGAACACAACAAAACTCACATCTCTCAGGAGCGTCTTCTAATCCAGTAGACCGACATCCTGCCCCGGATCGCATTTCAAAGATGAGAGACCCAAAGCTCACAAGCCCACAGTTCAAGAGAAAGGAAAGGCAAGTGGATAACATGCCTTTACTCTGCTTTGATTGTGGCAAGAAAGGGCATATATCTCGAAATTGTCCGAGTAGGAAGGTCGATAATGAAGTTACTAGGGAAAGAAGA

Coding sequence (CDS)

ATGGACCCTGAGACCCGGCGGAGAATCGAGGAAACGGTGATTGACGTATTGCAGAAATCGAACATGGAAGAGATGACGGAGTTCAAAGTTCGAGCCGCGGCCGCAGAACGGCTCGGAATCGATCTCTCCGGAATGGAATGCAAGCGGGTGGTGAGGAACGTGGTCGATAAATTTTTACTTTCTATCGTGGAGCACGAGGACAAGGGCAAGGAGGAAGGGACTGGCCCTACTGCTCCTGACCACGCTAAAGCGGTGGTGCAGGAGATAATCTCCAAGAAGGAGATCAACGATGATGGTGCCCGTCTGATTTGCAAGTTATCTGAAAACAGGAATGTGACAATTCATGATTTTAGAGGGAGAACTTTGGTATCGATTAGGCAGTATTATGAAAAAGGTGGAAAACAACTTCCTAGTGCTAAAGGAATCAGCTTGCTGACTGAACAATGGGCGGCCCTTAGGAGTAGTATTCCTGCTATAGAGGAAGCTATTTTGCAGATGAAAAAAAGATTAAGATTTCGACATGATGCTGAAAAAATTGATGCTGTCTCAGATTCCACAACTGAGGTTACTCCTCCAAAATTTCCTTTTGAAATTATTCGGTTTGATGGAAAAAACTACCACGTATGGGCACGTCAGATGGAGTTTCTCCTGCAGCACTTAAAGATTGCTTATGTACTTTTTGATTCATGCCCTAGTGCTGTTCTTGGGCCAGGATCAAGCTCTGGAAATGCTGCTCAGTCCATGGCCGCTGAACAGAAATGGATGAATGATGACCACATGTGTCGCCACAACATTCTGAACTCCCTCTCCGATAGTCTTTTTCATCAATACACAAAGAGAACAATGAGTGCCCGAGAACTCTGGGAGGAGCTAAAATTGCTTTATCTTTTTGAAGGATTTGGCACCAAGAGAACTCAAGTAGAAAAATATGTGGAATTCAGGTTGGCCGAGGAGAAGTCAATATTAGAACAAGTTCAAGAACTTAATAGCATTTCTGATTCCATTGTAGCTGCTGGAATGCGGATTGACGAGGATTTTCACGTTAGTGTCATTATGTCAAAGCTTCCTTCTTCTTGGAAGAATGTGTGGATGAAGTTAATGCAAGAGGAGCCTCTTCCCCTTTGGAAGTTGATGGATCGATTGAGGATTGAAGAAGAACTACGAACACAACAAAACTCACATCTCTCAGGAGCGTCTTCTAATCCAGTAGACCGACATCCTGCCCCGGATCGCATTTCAAAGATGAGAGACCCAAAGCTCACAAGCCCACAGTTCAAGAGAAAGGAAAGGCAAGTGGATAACATGCCTTTACTCTGCTTTGATTGTGGCAAGAAAGGGCATATATCTCGAAATTGTCCGAGTAGGAAGGTCGATAATGAAGTTACTAGGGAAAGAAGA

Protein sequence

MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLLSIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGRTLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRLRFRHDAEKIDAVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGSSSGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEGFGTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSWKNVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDRHPAPDRISKMRDPKLTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRKVDNEVTRERR

Homology

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BLAST of MS005896 vs. NCBI nr
Match: XP_004134299.1 (uncharacterized protein LOC101205072 [Cucumis sativus] >KGN56418.1 hypothetical protein Csa_011632 [Cucumis sativus])

HSP 1 Score: 594.7 bits (1532), Expect = 6.7e-166
Identity = 307/467 (65.74%), Postives = 367/467 (78.59%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           M+ ETRRRIEE VI+VL+KS+ME+ TEFKVR+   ERLGIDLS  +CK +VRNVV+ FLL
Sbjct: 1   MNDETRRRIEENVIEVLKKSSMEDTTEFKVRSQVEERLGIDLSNKQCKLLVRNVVESFLL 60

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S+ E    GKE+  GP+     KAV Q+I+ KKE NDDG  LIC+LS NR+VTIH F+G 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENKAVEQKIVPKKEFNDDGDLLICRLSNNRSVTIHKFKGA 120

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRLRFRHDAEKID 180
            +VS+RQYYEK GKQLP+ KGIS+ TEQW+  +S+IPAI EAILQMK+  R  HDAEKI 
Sbjct: 121 PMVSVRQYYEKDGKQLPTLKGISMPTEQWSVFKSNIPAIAEAILQMKRNKRSEHDAEKIG 180

Query: 181 AVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGSS 240
           A S+ TT VT PK+P E IRFDGKNY+ WA QME LLQ LKIAYVL + CP+AVLG  SS
Sbjct: 181 AFSNPTTRVTSPKYPIETIRFDGKNYNAWAHQMELLLQDLKIAYVLSNQCPTAVLGEESS 240

Query: 241 SGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEGF 300
           SGNAAQS AAEQKWM DDHMCR NILNSLSD LF++Y+K+TMSA ELW+ELKLLYL E F
Sbjct: 241 SGNAAQSKAAEQKWMRDDHMCRRNILNSLSDRLFNEYSKKTMSASELWKELKLLYLLEEF 300

Query: 301 GTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSWK 360
           GTKR+QV+KY+EF++ EEKSILEQV+ELN I+DSI ++G  IDEDFHVS I+SKLP SWK
Sbjct: 301 GTKRSQVKKYLEFKMVEEKSILEQVEELNHIADSIGSSGTVIDEDFHVSAIISKLPLSWK 360

Query: 361 NVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDR--HPAPDRISKMRDP 420
           NVW+ LM E+ LPL KL DRLRIEE+LRTQ+NS LSG SS+P  R  H A +  SKM DP
Sbjct: 361 NVWVNLMHEQYLPLRKLTDRLRIEEQLRTQKNSRLSGVSSSPTPRGQHHAANHPSKMGDP 420

Query: 421 KLTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRKVDNEVTRER 466
           K  +   ++KE Q +   LLC DCGK+GH S NCP++KV+NEV R+R
Sbjct: 421 KPVTVPLRKKECQKEVKTLLCLDCGKEGHTSPNCPTKKVNNEVPRQR 467

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BLAST of MS005896 vs. NCBI nr
Match: XP_008437880.1 (PREDICTED: uncharacterized protein LOC103483179 [Cucumis melo] >KAA0048883.1 Zinc knuckle family protein, putative isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 568.5 bits (1464), Expect = 5.2e-158
Identity = 297/461 (64.43%), Postives = 354/461 (76.79%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           M+ ETRR+IEE VI+VL++SN+E+ TEFKVR+   ER+GIDLS  +CK +VRNVV+ FLL
Sbjct: 1   MNDETRRKIEENVIEVLKQSNIEDTTEFKVRSQVEERIGIDLSNKQCKLLVRNVVESFLL 60

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S+ E    GKE+  GP+     +AV Q+II KKE NDDG  LIC+LS NR+VTIH F+G 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENRAVEQKIIPKKEFNDDGDLLICRLSNNRSVTIHKFKGE 120

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRLRFRHDAEKID 180
            +VSIRQYY K GKQLP+ KGIS+ TEQW+  +S+IPAI EAILQMK+  R  HDA+KI 
Sbjct: 121 RMVSIRQYYAKDGKQLPTLKGISMPTEQWSVFKSNIPAIAEAILQMKRNKRSEHDADKIG 180

Query: 181 AVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGSS 240
           A+S + T VT PKFP E IRFDGKNYH WA QME LLQ LKIAYVL + CP+AVLG  SS
Sbjct: 181 AIS-NPTRVTYPKFPIETIRFDGKNYHAWAHQMELLLQDLKIAYVLSNQCPTAVLGAESS 240

Query: 241 SGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEGF 300
           SGNAAQS  AEQKWM+DDHMC  NILNSLSD LF++Y+K+ MSA ELW+ELKLLY  E F
Sbjct: 241 SGNAAQSKVAEQKWMSDDHMCHRNILNSLSDRLFNEYSKKPMSASELWKELKLLYFLEEF 300

Query: 301 GTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSWK 360
           GTKR+QV+KY+EF++ EEKSILEQV+ELN I+DSI +AG  IDEDFHVS I+SKLP SWK
Sbjct: 301 GTKRSQVKKYLEFKMVEEKSILEQVEELNHIADSIGSAGTIIDEDFHVSAIISKLPLSWK 360

Query: 361 NVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDR--HPAPDRISKMRDP 420
           NVWM LMQE  LPL KL DRLRIEE+LRTQ+NS LS  S  P  R  H A +  SKM DP
Sbjct: 361 NVWMSLMQEHYLPLSKLTDRLRIEEQLRTQKNSRLSRVSIGPNTRGQHHAANHPSKMGDP 420

Query: 421 KLTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRKVDN 460
              +   ++KE Q +   LLC DCGK+GH S NCP++KVDN
Sbjct: 421 MPVTVPLRKKECQKEVKTLLCLDCGKEGHTSPNCPTKKVDN 460

[Close]

BLAST of MS005896 vs. NCBI nr
Match: XP_038878142.1 (uncharacterized protein LOC120070296 [Benincasa hispida])

HSP 1 Score: 566.6 bits (1459), Expect = 2.0e-157
Identity = 297/458 (64.85%), Postives = 356/458 (77.73%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           MD ET+ +IEETVIDVL+KSNMEE TEFKVR    ERLGIDLS  E K +VRNVV+ FLL
Sbjct: 1   MDRETQLKIEETVIDVLKKSNMEETTEFKVRGQVEERLGIDLSNREYKLLVRNVVESFLL 60

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S+ E    GKE+  GP+     K + QE I+ KE NDDG  +IC+LS NR+VTIH FRG 
Sbjct: 61  SMSEKVCMGKEDEPGPSVRYENKPMDQE-IAPKEFNDDGDLVICRLSNNRSVTIHKFRGA 120

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRLRFRHDAEKID 180
            +VSIRQ++EK GKQLP+ KGIS+ TEQW+A +S+IPAIE+AILQMK + R  HDA+KI 
Sbjct: 121 NMVSIRQFFEKDGKQLPTLKGISMSTEQWSAFKSNIPAIEDAILQMKTKKRSEHDADKIG 180

Query: 181 AVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGSS 240
           AVS+ T  VTPP FP E IRFDGKNY++WA QME LLQHLKIAYVL + CP+ VLGP SS
Sbjct: 181 AVSELTNRVTPPNFPNETIRFDGKNYNLWASQMESLLQHLKIAYVLSEQCPTPVLGPESS 240

Query: 241 SGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEGF 300
           SGN AQ+ AAEQKWM+DD MC  NILNSLSD LF++Y  +TMSA ELW ELKLLY  E F
Sbjct: 241 SGNPAQTKAAEQKWMSDDRMCCRNILNSLSDRLFNEYATKTMSASELWNELKLLYFLEEF 300

Query: 301 GTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSWK 360
           GTKR+QV+KY+EFR+ EEKSILEQV++LN+I+DSIV+AG  IDEDFHVS I+SKLP SW 
Sbjct: 301 GTKRSQVKKYLEFRMVEEKSILEQVEKLNNIADSIVSAGTLIDEDFHVSAIISKLPLSWH 360

Query: 361 NVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNP--VDRHPAPDRISKMRDP 420
           +VW+ LM E+ L L KL+DRLRIEE+LRTQ+NSHLSG SS P    +H   + +SKM DP
Sbjct: 361 SVWVNLMHEQYLSLAKLIDRLRIEEQLRTQKNSHLSGVSSAPSLCGQHHIANHLSKMEDP 420

Query: 421 KLTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRK 457
           KL+S   +++E Q D   LLC +CGK+GH S NCPSRK
Sbjct: 421 KLSSLPLRKREWQNDVKTLLCLNCGKEGHTSPNCPSRK 457

[Close]

BLAST of MS005896 vs. NCBI nr
Match: TYK20834.1 (Zinc knuckle family protein, putative isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 566.6 bits (1459), Expect = 2.0e-157
Identity = 296/461 (64.21%), Postives = 353/461 (76.57%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           M+ ETRR+IEE VI+VL++SN+E+ TEFKVR+   ER+GIDLS  +CK +VRNVV+ FLL
Sbjct: 1   MNDETRRKIEENVIEVLKQSNIEDTTEFKVRSQVEERIGIDLSNKQCKLLVRNVVESFLL 60

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S+ E    GKE+  GP+     +AV Q+II KKE NDDG  LIC+LS NR+VTIH F+G 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENRAVEQKIIPKKEFNDDGDLLICRLSNNRSVTIHKFKGE 120

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRLRFRHDAEKID 180
            +VSIRQYY K GKQLP+ KGIS+ TEQW+  +S+IPAI EAILQMK+  R  HDA+KI 
Sbjct: 121 RMVSIRQYYAKDGKQLPTLKGISMPTEQWSVFKSNIPAIAEAILQMKRNKRSEHDADKIG 180

Query: 181 AVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGSS 240
           A+S + T VT PKFP E IRFDGKNYH WA QME LLQ LKIAYVL + CP+AVLG  SS
Sbjct: 181 AIS-NPTRVTYPKFPIETIRFDGKNYHAWAHQMELLLQDLKIAYVLSNQCPTAVLGAESS 240

Query: 241 SGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEGF 300
           SGNAAQS  AEQKWM+DDHMC  NILNSLSD LF++Y+K+ MSA ELW+ELKLLY  E F
Sbjct: 241 SGNAAQSKVAEQKWMSDDHMCHRNILNSLSDRLFNEYSKKPMSASELWKELKLLYFLEEF 300

Query: 301 GTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSWK 360
           GTKR+QV+KY+EF++ EEKSILEQV+ELN I+DSI +AG  IDEDFHVS I+SKLP SWK
Sbjct: 301 GTKRSQVKKYLEFKMVEEKSILEQVEELNHIADSIGSAGTIIDEDFHVSAIISKLPLSWK 360

Query: 361 NVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDR--HPAPDRISKMRDP 420
           NVWM LM E  LPL KL DRLRIEE+LRTQ+NS LS  S  P  R  H A +  SKM DP
Sbjct: 361 NVWMSLMHEHYLPLSKLTDRLRIEEQLRTQKNSRLSRVSIGPNTRGQHHAANHPSKMGDP 420

Query: 421 KLTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRKVDN 460
              +   ++KE Q +   LLC DCGK+GH S NCP++KVDN
Sbjct: 421 MPVTVPLRKKECQKEVKTLLCLDCGKEGHTSPNCPTKKVDN 460

[Close]

BLAST of MS005896 vs. NCBI nr
Match: XP_022945450.1 (uncharacterized protein LOC111449676 [Cucurbita moschata])

HSP 1 Score: 552.0 bits (1421), Expect = 5.0e-153
Identity = 293/457 (64.11%), Postives = 358/457 (78.34%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           MD ETRRRI+ETVID+L+ SNMEEMTE+K+RA A +RLG+DLS ++CK +VR+VV+ FL 
Sbjct: 1   MDNETRRRIKETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 60

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S  E +DKGKE   GP+     KA  QEI+ KKEIN D  R+IC+LS NRNVT+H+F+G 
Sbjct: 61  SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 120

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRL-RFRHDAEKI 180
            LVSIRQYYEK GKQLP  KGISL TEQW+A RS+IPAIEEAILQMK+++ R  HDA   
Sbjct: 121 ALVSIRQYYEKDGKQLPGIKGISLTTEQWSAFRSNIPAIEEAILQMKRKIKRSEHDANTS 180

Query: 181 DAVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGS 240
            AVS   T  + PKFP E IRFDGKNY VWARQMEFLL+ LKIAYVL D  P+++LGP S
Sbjct: 181 GAVSVPATG-SAPKFPSETIRFDGKNYRVWARQMEFLLRRLKIAYVLSDHRPTSMLGPES 240

Query: 241 SSGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEG 300
           SSGN ++S A+EQ+WM+DDHMCRH ILNSLSDSLFH+YTKRTMSARELW+EL  LYL + 
Sbjct: 241 SSGNTSRSKASEQEWMSDDHMCRHIILNSLSDSLFHKYTKRTMSARELWKELNSLYLCD- 300

Query: 301 FGTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSW 360
           +GT+R+QV+KY+EFR+ EEKSILEQV+ELN+I++SI++AGMRIDEDFHVS I+SKLP SW
Sbjct: 301 YGTRRSQVKKYLEFRMVEEKSILEQVEELNNIAESIISAGMRIDEDFHVSAIISKLPPSW 360

Query: 361 KNVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDRHPAPDRISKMRDPK 420
            NV++KLM+EE LP   L+DRLR EE+LRTQQNSH SG         P  +   KM D  
Sbjct: 361 TNVFVKLMREEHLPSVVLIDRLRNEEKLRTQQNSHRSGG------ERPCMNHRRKMGDQM 420

Query: 421 LTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRK 457
             S   +++E ++D   LLC +CGK+GHISR+CPS K
Sbjct: 421 SQSLPSRKREWKMDVKTLLCLNCGKEGHISRDCPSSK 449

[Close]

BLAST of MS005896 vs. ExPASy Swiss-Prot
Match: O65155 (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-34
Identity = 82/174 (47.13%), Postives = 118/174 (67.82%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFL- 60
           M+ ET+ +IE+TVI++L +S+M+E+TEFKVR  A+E+L IDLS    K  VR+VV+KFL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 61  ---LSIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHD 120
                  E+    KEE  G    D  K         KE +DDG  +IC+LS+ R VTI +
Sbjct: 61  EERAREYENSQVNKEEEDGD--KDCGK-------GNKEFDDDGDLIICRLSDKRRVTIQE 120

Query: 121 FRGRTLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRL 171
           F+G++LVSIR+YY+K GK+LP++KGISL  EQW+  + ++PAIE A+ +M+ R+
Sbjct: 121 FKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165

[Close]

BLAST of MS005896 vs. ExPASy Swiss-Prot
Match: O65154 (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-08
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 102 LICKLSENRNVTIHDFRGRTLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEE 161
           ++C +S+NR V++ ++ G+  + IR++Y K GK LP  KGISL  +QW  LR+    IE+
Sbjct: 42  VVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEK 101

Query: 162 AI 164
           A+
Sbjct: 102 AL 103

[Close]

BLAST of MS005896 vs. ExPASy Swiss-Prot
Match: P87294 (Putative RNA polymerase II transcriptional coactivator OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16A10.02 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.3e-06
Identity = 22/57 (38.60%), Postives = 36/57 (63.16%), Query Frame = 0


Query: 107 SENRNVTIHDFRGRTLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAI 164
           +E + +T+ +FRG   V IR+YYEK G  LP  KGI+L   +W  L+  I  +++++
Sbjct: 35  TEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIALNINEWKKLKQLIHEVDDSL 91

[Close]

BLAST of MS005896 vs. ExPASy Swiss-Prot
Match: Q9VLR5 (RNA polymerase II transcriptional coactivator OS=Drosophila melanogaster OX=7227 GN=Ssb-c31a PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-05
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 110 RNVTIHDFRGRTLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAI 164
           R V I++FRGR  V IR++Y+KGG+ LP  KGISL   QW  L      +  AI
Sbjct: 55  RQVRINEFRGRKSVDIREFYDKGGQILPGKKGISLSLIQWKKLLEVAEEVTRAI 108

[Close]

BLAST of MS005896 vs. ExPASy Swiss-Prot
Match: Q872F4 (Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=80A10.210 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-05
Identity = 31/89 (34.83%), Postives = 44/89 (49.44%), Query Frame = 0


Query: 96  NDDGARLICKLSENRNVTIHDFRGRTLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSS 155
           +D       +L  NR ++   FR  TLV+IR+YY+ GGK +P  KGISL   Q+  L   
Sbjct: 38  SDQDGNTFWELGNNRRISSSVFRNTTLVNIREYYDAGGKLMPGKKGISLSLAQYQNLLKV 97

Query: 156 IPAIEEAILQMKKRLR---FRHDAEKIDA 182
           IP +   +      +    F   AE+ DA
Sbjct: 98  IPQLNADLRAQGHAIEDPGFAQVAEQTDA 126

[Close]

BLAST of MS005896 vs. ExPASy TrEMBL
Match: A0A0A0L3U5 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G119510 PE=3 SV=1)

HSP 1 Score: 594.7 bits (1532), Expect = 3.3e-166
Identity = 307/467 (65.74%), Postives = 367/467 (78.59%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           M+ ETRRRIEE VI+VL+KS+ME+ TEFKVR+   ERLGIDLS  +CK +VRNVV+ FLL
Sbjct: 1   MNDETRRRIEENVIEVLKKSSMEDTTEFKVRSQVEERLGIDLSNKQCKLLVRNVVESFLL 60

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S+ E    GKE+  GP+     KAV Q+I+ KKE NDDG  LIC+LS NR+VTIH F+G 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENKAVEQKIVPKKEFNDDGDLLICRLSNNRSVTIHKFKGA 120

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRLRFRHDAEKID 180
            +VS+RQYYEK GKQLP+ KGIS+ TEQW+  +S+IPAI EAILQMK+  R  HDAEKI 
Sbjct: 121 PMVSVRQYYEKDGKQLPTLKGISMPTEQWSVFKSNIPAIAEAILQMKRNKRSEHDAEKIG 180

Query: 181 AVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGSS 240
           A S+ TT VT PK+P E IRFDGKNY+ WA QME LLQ LKIAYVL + CP+AVLG  SS
Sbjct: 181 AFSNPTTRVTSPKYPIETIRFDGKNYNAWAHQMELLLQDLKIAYVLSNQCPTAVLGEESS 240

Query: 241 SGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEGF 300
           SGNAAQS AAEQKWM DDHMCR NILNSLSD LF++Y+K+TMSA ELW+ELKLLYL E F
Sbjct: 241 SGNAAQSKAAEQKWMRDDHMCRRNILNSLSDRLFNEYSKKTMSASELWKELKLLYLLEEF 300

Query: 301 GTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSWK 360
           GTKR+QV+KY+EF++ EEKSILEQV+ELN I+DSI ++G  IDEDFHVS I+SKLP SWK
Sbjct: 301 GTKRSQVKKYLEFKMVEEKSILEQVEELNHIADSIGSSGTVIDEDFHVSAIISKLPLSWK 360

Query: 361 NVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDR--HPAPDRISKMRDP 420
           NVW+ LM E+ LPL KL DRLRIEE+LRTQ+NS LSG SS+P  R  H A +  SKM DP
Sbjct: 361 NVWVNLMHEQYLPLRKLTDRLRIEEQLRTQKNSRLSGVSSSPTPRGQHHAANHPSKMGDP 420

Query: 421 KLTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRKVDNEVTRER 466
           K  +   ++KE Q +   LLC DCGK+GH S NCP++KV+NEV R+R
Sbjct: 421 KPVTVPLRKKECQKEVKTLLCLDCGKEGHTSPNCPTKKVNNEVPRQR 467

[Close]

BLAST of MS005896 vs. ExPASy TrEMBL
Match: A0A5A7TZ44 (Zinc knuckle family protein, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G00980 PE=3 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 2.5e-158
Identity = 297/461 (64.43%), Postives = 354/461 (76.79%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           M+ ETRR+IEE VI+VL++SN+E+ TEFKVR+   ER+GIDLS  +CK +VRNVV+ FLL
Sbjct: 1   MNDETRRKIEENVIEVLKQSNIEDTTEFKVRSQVEERIGIDLSNKQCKLLVRNVVESFLL 60

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S+ E    GKE+  GP+     +AV Q+II KKE NDDG  LIC+LS NR+VTIH F+G 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENRAVEQKIIPKKEFNDDGDLLICRLSNNRSVTIHKFKGE 120

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRLRFRHDAEKID 180
            +VSIRQYY K GKQLP+ KGIS+ TEQW+  +S+IPAI EAILQMK+  R  HDA+KI 
Sbjct: 121 RMVSIRQYYAKDGKQLPTLKGISMPTEQWSVFKSNIPAIAEAILQMKRNKRSEHDADKIG 180

Query: 181 AVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGSS 240
           A+S + T VT PKFP E IRFDGKNYH WA QME LLQ LKIAYVL + CP+AVLG  SS
Sbjct: 181 AIS-NPTRVTYPKFPIETIRFDGKNYHAWAHQMELLLQDLKIAYVLSNQCPTAVLGAESS 240

Query: 241 SGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEGF 300
           SGNAAQS  AEQKWM+DDHMC  NILNSLSD LF++Y+K+ MSA ELW+ELKLLY  E F
Sbjct: 241 SGNAAQSKVAEQKWMSDDHMCHRNILNSLSDRLFNEYSKKPMSASELWKELKLLYFLEEF 300

Query: 301 GTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSWK 360
           GTKR+QV+KY+EF++ EEKSILEQV+ELN I+DSI +AG  IDEDFHVS I+SKLP SWK
Sbjct: 301 GTKRSQVKKYLEFKMVEEKSILEQVEELNHIADSIGSAGTIIDEDFHVSAIISKLPLSWK 360

Query: 361 NVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDR--HPAPDRISKMRDP 420
           NVWM LMQE  LPL KL DRLRIEE+LRTQ+NS LS  S  P  R  H A +  SKM DP
Sbjct: 361 NVWMSLMQEHYLPLSKLTDRLRIEEQLRTQKNSRLSRVSIGPNTRGQHHAANHPSKMGDP 420

Query: 421 KLTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRKVDN 460
              +   ++KE Q +   LLC DCGK+GH S NCP++KVDN
Sbjct: 421 MPVTVPLRKKECQKEVKTLLCLDCGKEGHTSPNCPTKKVDN 460

[Close]

BLAST of MS005896 vs. ExPASy TrEMBL
Match: A0A1S3AV18 (uncharacterized protein LOC103483179 OS=Cucumis melo OX=3656 GN=LOC103483179 PE=3 SV=1)

HSP 1 Score: 568.5 bits (1464), Expect = 2.5e-158
Identity = 297/461 (64.43%), Postives = 354/461 (76.79%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           M+ ETRR+IEE VI+VL++SN+E+ TEFKVR+   ER+GIDLS  +CK +VRNVV+ FLL
Sbjct: 1   MNDETRRKIEENVIEVLKQSNIEDTTEFKVRSQVEERIGIDLSNKQCKLLVRNVVESFLL 60

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S+ E    GKE+  GP+     +AV Q+II KKE NDDG  LIC+LS NR+VTIH F+G 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENRAVEQKIIPKKEFNDDGDLLICRLSNNRSVTIHKFKGE 120

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRLRFRHDAEKID 180
            +VSIRQYY K GKQLP+ KGIS+ TEQW+  +S+IPAI EAILQMK+  R  HDA+KI 
Sbjct: 121 RMVSIRQYYAKDGKQLPTLKGISMPTEQWSVFKSNIPAIAEAILQMKRNKRSEHDADKIG 180

Query: 181 AVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGSS 240
           A+S + T VT PKFP E IRFDGKNYH WA QME LLQ LKIAYVL + CP+AVLG  SS
Sbjct: 181 AIS-NPTRVTYPKFPIETIRFDGKNYHAWAHQMELLLQDLKIAYVLSNQCPTAVLGAESS 240

Query: 241 SGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEGF 300
           SGNAAQS  AEQKWM+DDHMC  NILNSLSD LF++Y+K+ MSA ELW+ELKLLY  E F
Sbjct: 241 SGNAAQSKVAEQKWMSDDHMCHRNILNSLSDRLFNEYSKKPMSASELWKELKLLYFLEEF 300

Query: 301 GTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSWK 360
           GTKR+QV+KY+EF++ EEKSILEQV+ELN I+DSI +AG  IDEDFHVS I+SKLP SWK
Sbjct: 301 GTKRSQVKKYLEFKMVEEKSILEQVEELNHIADSIGSAGTIIDEDFHVSAIISKLPLSWK 360

Query: 361 NVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDR--HPAPDRISKMRDP 420
           NVWM LMQE  LPL KL DRLRIEE+LRTQ+NS LS  S  P  R  H A +  SKM DP
Sbjct: 361 NVWMSLMQEHYLPLSKLTDRLRIEEQLRTQKNSRLSRVSIGPNTRGQHHAANHPSKMGDP 420

Query: 421 KLTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRKVDN 460
              +   ++KE Q +   LLC DCGK+GH S NCP++KVDN
Sbjct: 421 MPVTVPLRKKECQKEVKTLLCLDCGKEGHTSPNCPTKKVDN 460

[Close]

BLAST of MS005896 vs. ExPASy TrEMBL
Match: A0A5D3DBA1 (Zinc knuckle family protein, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00970 PE=3 SV=1)

HSP 1 Score: 566.6 bits (1459), Expect = 9.5e-158
Identity = 296/461 (64.21%), Postives = 353/461 (76.57%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           M+ ETRR+IEE VI+VL++SN+E+ TEFKVR+   ER+GIDLS  +CK +VRNVV+ FLL
Sbjct: 1   MNDETRRKIEENVIEVLKQSNIEDTTEFKVRSQVEERIGIDLSNKQCKLLVRNVVESFLL 60

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S+ E    GKE+  GP+     +AV Q+II KKE NDDG  LIC+LS NR+VTIH F+G 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENRAVEQKIIPKKEFNDDGDLLICRLSNNRSVTIHKFKGE 120

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRLRFRHDAEKID 180
            +VSIRQYY K GKQLP+ KGIS+ TEQW+  +S+IPAI EAILQMK+  R  HDA+KI 
Sbjct: 121 RMVSIRQYYAKDGKQLPTLKGISMPTEQWSVFKSNIPAIAEAILQMKRNKRSEHDADKIG 180

Query: 181 AVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGSS 240
           A+S + T VT PKFP E IRFDGKNYH WA QME LLQ LKIAYVL + CP+AVLG  SS
Sbjct: 181 AIS-NPTRVTYPKFPIETIRFDGKNYHAWAHQMELLLQDLKIAYVLSNQCPTAVLGAESS 240

Query: 241 SGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEGF 300
           SGNAAQS  AEQKWM+DDHMC  NILNSLSD LF++Y+K+ MSA ELW+ELKLLY  E F
Sbjct: 241 SGNAAQSKVAEQKWMSDDHMCHRNILNSLSDRLFNEYSKKPMSASELWKELKLLYFLEEF 300

Query: 301 GTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSWK 360
           GTKR+QV+KY+EF++ EEKSILEQV+ELN I+DSI +AG  IDEDFHVS I+SKLP SWK
Sbjct: 301 GTKRSQVKKYLEFKMVEEKSILEQVEELNHIADSIGSAGTIIDEDFHVSAIISKLPLSWK 360

Query: 361 NVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDR--HPAPDRISKMRDP 420
           NVWM LM E  LPL KL DRLRIEE+LRTQ+NS LS  S  P  R  H A +  SKM DP
Sbjct: 361 NVWMSLMHEHYLPLSKLTDRLRIEEQLRTQKNSRLSRVSIGPNTRGQHHAANHPSKMGDP 420

Query: 421 KLTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRKVDN 460
              +   ++KE Q +   LLC DCGK+GH S NCP++KVDN
Sbjct: 421 MPVTVPLRKKECQKEVKTLLCLDCGKEGHTSPNCPTKKVDN 460

[Close]

BLAST of MS005896 vs. ExPASy TrEMBL
Match: A0A6J1G0Z2 (uncharacterized protein LOC111449676 OS=Cucurbita moschata OX=3662 GN=LOC111449676 PE=3 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 2.4e-153
Identity = 293/457 (64.11%), Postives = 358/457 (78.34%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           MD ETRRRI+ETVID+L+ SNMEEMTE+K+RA A +RLG+DLS ++CK +VR+VV+ FL 
Sbjct: 1   MDNETRRRIKETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 60

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S  E +DKGKE   GP+     KA  QEI+ KKEIN D  R+IC+LS NRNVT+H+F+G 
Sbjct: 61  SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 120

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRL-RFRHDAEKI 180
            LVSIRQYYEK GKQLP  KGISL TEQW+A RS+IPAIEEAILQMK+++ R  HDA   
Sbjct: 121 ALVSIRQYYEKDGKQLPGIKGISLTTEQWSAFRSNIPAIEEAILQMKRKIKRSEHDANTS 180

Query: 181 DAVSDSTTEVTPPKFPFEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPSAVLGPGS 240
            AVS   T  + PKFP E IRFDGKNY VWARQMEFLL+ LKIAYVL D  P+++LGP S
Sbjct: 181 GAVSVPATG-SAPKFPSETIRFDGKNYRVWARQMEFLLRRLKIAYVLSDHRPTSMLGPES 240

Query: 241 SSGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLFEG 300
           SSGN ++S A+EQ+WM+DDHMCRH ILNSLSDSLFH+YTKRTMSARELW+EL  LYL + 
Sbjct: 241 SSGNTSRSKASEQEWMSDDHMCRHIILNSLSDSLFHKYTKRTMSARELWKELNSLYLCD- 300

Query: 301 FGTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPSSW 360
           +GT+R+QV+KY+EFR+ EEKSILEQV+ELN+I++SI++AGMRIDEDFHVS I+SKLP SW
Sbjct: 301 YGTRRSQVKKYLEFRMVEEKSILEQVEELNNIAESIISAGMRIDEDFHVSAIISKLPPSW 360

Query: 361 KNVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDRHPAPDRISKMRDPK 420
            NV++KLM+EE LP   L+DRLR EE+LRTQQNSH SG         P  +   KM D  
Sbjct: 361 TNVFVKLMREEHLPSVVLIDRLRNEEKLRTQQNSHRSGG------ERPCMNHRRKMGDQM 420

Query: 421 LTSPQFKRKERQVDNMPLLCFDCGKKGHISRNCPSRK 457
             S   +++E ++D   LLC +CGK+GHISR+CPS K
Sbjct: 421 SQSLPSRKREWKMDVKTLLCLNCGKEGHISRDCPSSK 449

[Close]

BLAST of MS005896 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 299.3 bits (765), Expect = 5.4e-81
Identity = 183/473 (38.69%), Postives = 283/473 (59.83%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFLL 60
           M+    ++IEETV  +L +S+M++MTEFK+R  A+ +LGIDLSG   K++VR+V++ FLL
Sbjct: 12  MEIVATQKIEETVKSILSESDMDQMTEFKLRLDASAKLGIDLSGTNHKKLVRDVLEVFLL 71

Query: 61  SIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHDFRGR 120
           S       G+       AP   + V    ++   +  +  R ICKLSE +N T+  +RG+
Sbjct: 72  S-----TPGEALVPETVAPAKNETV---SVAAASVGGEDERFICKLSEKQNATVQRYRGQ 131

Query: 121 TLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRLRFRHDAEKID 180
             +SI    ++ GK   + +G  L T QW+ ++ +  AIE+ I Q + +L  + +A +  
Sbjct: 132 PFLSIGS--QEHGK---AFRGAHLSTNQWSVIKKNFAAIEDGIKQCQSKL--KSEAARNG 191

Query: 181 AVSDSTTEVTPPKFP-FEIIRFDGKNYHVWARQMEFLLQHLKIAYVLFDSCPS--AVLGP 240
             S++  + +   F   +I RFDGK+Y  WA QME  L+ LK+ YVL + CPS  +  GP
Sbjct: 192 DTSEAVDKDSSHGFSVIKISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGP 251

Query: 241 GSSSGNAAQSMAAEQKWMNDDHMCRHNILNSLSDSLFHQYTKRTMSARELWEELKLLYLF 300
            ++     ++ A  +KW+ DD++C  +++NSLSD L+ +Y+++   A+ELW+ELK +Y  
Sbjct: 252 ETNPREITRADATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQC 311

Query: 301 EGFGTKRTQVEKYVEFRLAEEKSILEQVQELNSISDSIVAAGMRIDEDFHVSVIMSKLPS 360
           +   +KR+QV KY+EFR+ EE+ ILEQVQ  N I+DSIV+AGM +DE FHVS I+SK P 
Sbjct: 312 DESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFPP 371

Query: 361 SWKNVWMKLMQEEPLPLWKLMDRLRIEEELRTQQNSHLSGASSNPVDRHPAPDRISKMRD 420
           SW+    +LM+EE LP+W LM+R++ EEEL        +GA    V   PA       R 
Sbjct: 372 SWRGFCTRLMEEEYLPVWMLMERVKAEEELLR------NGAKG--VTYRPATGSSQMERT 431

Query: 421 PKL-------TSPQFKRKERQVD-NMPLLCFDCGKKGHISRNCPSRKVDNEVT 463
           P L        S  +KRKE + D  + ++C +CG+KGH++++C   K D   +
Sbjct: 432 PSLGTTHRGSQSVGWKRKEPERDERVIIVCDNCGRKGHLAKHCWGSKSDERAS 461

[Close]

BLAST of MS005896 vs. TAIR 10
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP) )

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-35
Identity = 82/174 (47.13%), Postives = 118/174 (67.82%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFL- 60
           M+ ET+ +IE+TVI++L +S+M+E+TEFKVR  A+E+L IDLS    K  VR+VV+KFL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 61  ---LSIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHD 120
                  E+    KEE  G    D  K         KE +DDG  +IC+LS+ R VTI +
Sbjct: 61  EERAREYENSQVNKEEEDGD--KDCGK-------GNKEFDDDGDLIICRLSDKRRVTIQE 120

Query: 121 FRGRTLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRL 171
           F+G++LVSIR+YY+K GK+LP++KGISL  EQW+  + ++PAIE A+ +M+ R+
Sbjct: 121 FKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165

[Close]

BLAST of MS005896 vs. TAIR 10
Match: AT4G10920.2 (transcriptional coactivator p15 (PC4) family protein (KELP) )

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-35
Identity = 82/174 (47.13%), Postives = 118/174 (67.82%), Query Frame = 0


Query: 1   MDPETRRRIEETVIDVLQKSNMEEMTEFKVRAAAAERLGIDLSGMECKRVVRNVVDKFL- 60
           M+ ET+ +IE+TVI++L +S+M+E+TEFKVR  A+E+L IDLS    K  VR+VV+KFL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 61  ---LSIVEHEDKGKEEGTGPTAPDHAKAVVQEIISKKEINDDGARLICKLSENRNVTIHD 120
                  E+    KEE  G    D  K         KE +DDG  +IC+LS+ R VTI +
Sbjct: 61  EERAREYENSQVNKEEEDGD--KDCGK-------GNKEFDDDGDLIICRLSDKRRVTIQE 120

Query: 121 FRGRTLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEEAILQMKKRL 171
           F+G++LVSIR+YY+K GK+LP++KGISL  EQW+  + ++PAIE A+ +M+ R+
Sbjct: 121 FKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165

[Close]

BLAST of MS005896 vs. TAIR 10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-09
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 102 LICKLSENRNVTIHDFRGRTLVSIRQYYEKGGKQLPSAKGISLLTEQWAALRSSIPAIEE 161
           ++C +S+NR V++ ++ G+  + IR++Y K GK LP  KGISL  +QW  LR+    IE+
Sbjct: 42  VVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEK 101

Query: 162 AI 164
           A+
Sbjct: 102 AL 103

[Close]

BLAST of MS005896 vs. TAIR 10
Match: AT5G09240.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 51.2 bits (121), Expect = 2.6e-06
Identity = 27/68 (39.71%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 103 ICKLSENRNVTIHDFRGRTLVSIRQYYEKGGKQLP--SAKGISLLTEQWAALRSSIPAIE 162
           IC L +NR V + +  GR  ++IRQ++ K G  LP  S +GISL  EQW  LR+    I+
Sbjct: 42  ICNLDKNRRVFVRNCNGRIWIAIRQFFVKDGITLPCNSKQGISLSLEQWNDLRNHEEDID 101

Query: 163 EAILQMKK 169
           +A+ ++ +
Sbjct: 102 KALSELSE 109

The following BLAST results are available for this feature:

BLAST of MS005896 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134299.1	6.7e-166	65.74	uncharacterized protein LOC101205072 [Cucumis sativus] >KGN56418.1 hypothetical ...	[more]
XP_008437880.1	5.2e-158	64.43	PREDICTED: uncharacterized protein LOC103483179 [Cucumis melo] >KAA0048883.1 Zin...	[more]
XP_038878142.1	2.0e-157	64.85	uncharacterized protein LOC120070296 [Benincasa hispida]	[more]
TYK20834.1	2.0e-157	64.21	Zinc knuckle family protein, putative isoform 2 [Cucumis melo var. makuwa]	[more]
XP_022945450.1	5.0e-153	64.11	uncharacterized protein LOC111449676 [Cucurbita moschata]	[more]

BLAST of MS005896 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65155	1.7e-34	47.13	RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=37...	[more]
O65154	1.6e-08	41.94	RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=37...	[more]
P87294	7.3e-06	38.60	Putative RNA polymerase II transcriptional coactivator OS=Schizosaccharomyces po...	[more]
Q9VLR5	1.6e-05	48.15	RNA polymerase II transcriptional coactivator OS=Drosophila melanogaster OX=7227...	[more]
Q872F4	1.6e-05	34.83	Putative RNA polymerase II transcriptional coactivator OS=Neurospora crassa (str...	[more]

BLAST of MS005896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3U5	3.3e-166	65.74	CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G119510 P...	[more]
A0A5A7TZ44	2.5e-158	64.43	Zinc knuckle family protein, putative isoform 2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3AV18	2.5e-158	64.43	uncharacterized protein LOC103483179 OS=Cucumis melo OX=3656 GN=LOC103483179 PE=...	[more]
A0A5D3DBA1	9.5e-158	64.21	Zinc knuckle family protein, putative isoform 2 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6J1G0Z2	2.4e-153	64.11	uncharacterized protein LOC111449676 OS=Cucurbita moschata OX=3662 GN=LOC1114496...	[more]

BLAST of MS005896 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	5.4e-81	38.69	zinc knuckle (CCHC-type) family protein	[more]
AT4G10920.1	1.2e-35	47.13	transcriptional coactivator p15 (PC4) family protein (KELP)	[more]
AT4G10920.2	1.2e-35	47.13	transcriptional coactivator p15 (PC4) family protein (KELP)	[more]
AT5G09250.1	1.1e-09	41.94	ssDNA-binding transcriptional regulator	[more]
AT5G09240.1	2.6e-06	39.71	ssDNA-binding transcriptional regulator	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 438..454 e-value: 1.6E-4 score: 31.0
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 439..454 e-value: 7.3E-5 score: 22.7
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 439..454 score: 10.971343
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 254..389 e-value: 6.3E-17 score: 61.6
None	No IPR available	GENE3D	4.10.60.10		coord: 426..462 e-value: 7.2E-7 score: 30.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 389..429
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 407..429
None	No IPR available	PANTHER	PTHR47592:SF6	PBF68 PROTEIN	coord: 1..460
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 1..460
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	2.30.31.10	Transcriptional Coactivator Pc4; Chain A	coord: 93..171 e-value: 2.6E-23 score: 83.4
IPR009044	ssDNA-binding transcriptional regulator	SUPERFAMILY	54447	ssDNA-binding transcriptional regulator domain	coord: 103..164
IPR003173	Transcriptional coactivator p15 (PC4), C-terminal	PFAM	PF02229	PC4	coord: 104..154 e-value: 2.9E-19 score: 68.4
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 5..59 e-value: 5.0E-10 score: 39.1
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 426..456

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005896.1	MS005896.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding