MS005873 (gene) Bitter gourd (TR) v1

Overview
NameMS005873
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionGlycosyltransferase family 28 protein
Locationscaffold254: 2142225 .. 2142563 (+)
RNA-Seq ExpressionMS005873
SyntenyMS005873
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATGGCATTGGGTGTTTGGGACTGTGGCAGTCCATTATATGACTCCTACGAGCTGGCCTCCCTCGGCCACGTCATCGACCGGAATCTCATGGCATTGCCGCCGCCCTATCTCGGCGGATCACGGCGGTTCTTCCTCAACAAAGTCTCCCACTTCCACTCCTCCGATTCCATCCCATCACCCGCGCCGTCGTCCGATGCGGTGGGATCCACGCCCTCCACCACCGTGGTCGCCGCCGTGGTGGGCGGAACGAAGCAGAAGCTCAAGAAAATCAAAATTGTGAGGCTATTTGCAAATTTTAGCAGGATCGGATCTTGGAGGAAGAGGCAAATCCAAGTA

mRNA sequence

TCAATGGCATTGGGTGTTTGGGACTGTGGCAGTCCATTATATGACTCCTACGAGCTGGCCTCCCTCGGCCACGTCATCGACCGGAATCTCATGGCATTGCCGCCGCCCTATCTCGGCGGATCACGGCGGTTCTTCCTCAACAAAGTCTCCCACTTCCACTCCTCCGATTCCATCCCATCACCCGCGCCGTCGTCCGATGCGGTGGGATCCACGCCCTCCACCACCGTGGTCGCCGCCGTGGTGGGCGGAACGAAGCAGAAGCTCAAGAAAATCAAAATTGTGAGGCTATTTGCAAATTTTAGCAGGATCGGATCTTGGAGGAAGAGGCAAATCCAAGTA

Coding sequence (CDS)

TCAATGGCATTGGGTGTTTGGGACTGTGGCAGTCCATTATATGACTCCTACGAGCTGGCCTCCCTCGGCCACGTCATCGACCGGAATCTCATGGCATTGCCGCCGCCCTATCTCGGCGGATCACGGCGGTTCTTCCTCAACAAAGTCTCCCACTTCCACTCCTCCGATTCCATCCCATCACCCGCGCCGTCGTCCGATGCGGTGGGATCCACGCCCTCCACCACCGTGGTCGCCGCCGTGGTGGGCGGAACGAAGCAGAAGCTCAAGAAAATCAAAATTGTGAGGCTATTTGCAAATTTTAGCAGGATCGGATCTTGGAGGAAGAGGCAAATCCAAGTA

Protein sequence

SMALGVWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPAPSSDAVGSTPSTTVVAAVVGGTKQKLKKIKIVRLFANFSRIGSWRKRQIQV
Homology
BLAST of MS005873 vs. NCBI nr
Match: KAE8650237.1 (hypothetical protein Csa_011169 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 6.5e-22
Identity = 66/111 (59.46%), Postives = 72/111 (64.86%), Query Frame = 0

Query: 4   LGVWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPAP 63
           L VWDCGSPLYDSYELASL H+IDRNL+A PPPY  GSRR   NKVSHFH S   P P P
Sbjct: 13  LSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP-PPP 72

Query: 64  SSDAVGSTPSTTVVAAVVGGTKQKLKKIKIVRLFANFS-RIGSWRKRQIQV 114
           S  AV +        AVV   K KLKK K    F++ S R G WRK+Q QV
Sbjct: 73  S--AVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 120

BLAST of MS005873 vs. NCBI nr
Match: KAG6597095.1 (Protein ENHANCED DISEASE RESISTANCE 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 61/100 (61.00%), Postives = 67/100 (67.00%), Query Frame = 0

Query: 4   LGVWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPAP 63
           LGVWDCGSPLYDSYELASL H+IDR+LMALPPP+ GGSRRFF NKVSHF  SD +PSP  
Sbjct: 5   LGVWDCGSPLYDSYELASLAHIIDRHLMALPPPHYGGSRRFFSNKVSHF--SDIMPSPPL 64

Query: 64  SSDAVGSTPSTTVVAAVVGGTKQKLKKIKIVRLFANFSRI 104
           S+  +   P        VG  K KLKK K    F  F  I
Sbjct: 65  STSTLKKKP--------VGEMKNKLKKFKTTYTFFVFREI 94

BLAST of MS005873 vs. NCBI nr
Match: TYK17659.1 (glycosyltransferase family 28 protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 0

Query: 6   VWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPAPSS 65
           VWDCGSPLYDSYELASL H+IDRNL+A PPPY  GSRR   NKVSHFH S  IP P PS+
Sbjct: 7   VWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIPPPPPSA 66

Query: 66  DAVGSTPSTTVVAAVVGGTKQKLKKIKIVRLFANFSR-IGSWRKRQIQV 114
                      V  ++   K K+KK+K    F++ S   G WRK+QIQV
Sbjct: 67  VNGSFKKKPPAVDELI---KNKIKKLKSTFRFSSISSGFGFWRKKQIQV 112

BLAST of MS005873 vs. NCBI nr
Match: KAA0048909.1 (glycosyltransferase family 28 protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 0

Query: 6   VWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPAPSS 65
           VWDCGSPLYDSYELASL H+IDRNL+A PPPY  GSRR   NKVSHFH S  IP P PS+
Sbjct: 7   VWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIPPPPPSA 66

Query: 66  DAVGSTPSTTVVAAVVGGTKQKLKKIKIVRLFANFSR-IGSWRKRQIQV 114
                      V  ++   K K+KK+K    F++ S   G WRK+QIQV
Sbjct: 67  VNGSFKKKPPAVDELI---KNKIKKLKSTFRFSSISSGFGFWRKKQIQV 112

BLAST of MS005873 vs. NCBI nr
Match: PRQ58407.1 (hypothetical protein RchiOBHm_Chr1g0358991 [Rosa chinensis])

HSP 1 Score: 86.3 bits (212), Expect = 1.9e-13
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 0

Query: 3   ALGVWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPA 62
           AL +WDCGSPLYDSYELAS+ H+I+R+LMA P   LGGS + F+ K SH  SS +  + +
Sbjct: 14  ALAIWDCGSPLYDSYELASVSHLIERHLMAFPS--LGGSSKRFIAKFSHSSSSKTTSTTS 73

Query: 63  PS-SDAVGSTPSTTVVAAVV------------GGTKQKLKKIKIVRLFANFSRIGSWRKR 111
            +  +A GS      ++ ++            G TK+K KK+K       +SR G WRK+
Sbjct: 74  TTMKEAKGSDSMEENLSKILGIKKMWKRKGLFGATKEKTKKMKTTGFSGFYSRFGLWRKK 132

BLAST of MS005873 vs. ExPASy TrEMBL
Match: A0A0A0L377 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119750 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.1e-22
Identity = 66/111 (59.46%), Postives = 72/111 (64.86%), Query Frame = 0

Query: 4   LGVWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPAP 63
           L VWDCGSPLYDSYELASL H+IDRNL+A PPPY  GSRR   NKVSHFH S   P P P
Sbjct: 5   LSVWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSHLTP-PPP 64

Query: 64  SSDAVGSTPSTTVVAAVVGGTKQKLKKIKIVRLFANFS-RIGSWRKRQIQV 114
           S  AV +        AVV   K KLKK K    F++ S R G WRK+Q QV
Sbjct: 65  S--AVINASLEKKPPAVVDELKNKLKKFKSTFRFSSISNRFGLWRKKQFQV 112

BLAST of MS005873 vs. ExPASy TrEMBL
Match: A0A5A7U611 (Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001280 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.0e-22
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 0

Query: 6   VWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPAPSS 65
           VWDCGSPLYDSYELASL H+IDRNL+A PPPY  GSRR   NKVSHFH S  IP P PS+
Sbjct: 7   VWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIPPPPPSA 66

Query: 66  DAVGSTPSTTVVAAVVGGTKQKLKKIKIVRLFANFSR-IGSWRKRQIQV 114
                      V  ++   K K+KK+K    F++ S   G WRK+QIQV
Sbjct: 67  VNGSFKKKPPAVDELI---KNKIKKLKSTFRFSSISSGFGFWRKKQIQV 112

BLAST of MS005873 vs. ExPASy TrEMBL
Match: A0A5D3D3M1 (Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005310 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.0e-22
Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 0

Query: 6   VWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPAPSS 65
           VWDCGSPLYDSYELASL H+IDRNL+A PPPY  GSRR   NKVSHFH S  IP P PS+
Sbjct: 7   VWDCGSPLYDSYELASLAHLIDRNLLAFPPPYHAGSRRITSNKVSHFHFSPFIPPPPPSA 66

Query: 66  DAVGSTPSTTVVAAVVGGTKQKLKKIKIVRLFANFSR-IGSWRKRQIQV 114
                      V  ++   K K+KK+K    F++ S   G WRK+QIQV
Sbjct: 67  VNGSFKKKPPAVDELI---KNKIKKLKSTFRFSSISSGFGFWRKKQIQV 112

BLAST of MS005873 vs. ExPASy TrEMBL
Match: A0A2P6SIA6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0358991 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.1e-14
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 0

Query: 3   ALGVWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPA 62
           AL +WDCGSPLYDSYELAS+ H+I+R+LMA P   LGGS + F+ K SH  SS +  + +
Sbjct: 14  ALAIWDCGSPLYDSYELASVSHLIERHLMAFPS--LGGSSKRFIAKFSHSSSSKTTSTTS 73

Query: 63  PS-SDAVGSTPSTTVVAAVV------------GGTKQKLKKIKIVRLFANFSRIGSWRKR 111
            +  +A GS      ++ ++            G TK+K KK+K       +SR G WRK+
Sbjct: 74  TTMKEAKGSDSMEENLSKILGIKKMWKRKGLFGATKEKTKKMKTTGFSGFYSRFGLWRKK 132

BLAST of MS005873 vs. ExPASy TrEMBL
Match: A0A6A1W2Z6 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G011159 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.0e-12
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 0

Query: 3   ALGVWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSS-DSIPSP 62
           AL +WDCGSPLYDSYEL S  HVIDR+LMAL  P+LGGS+  F+++ SH +++  S+ S 
Sbjct: 16  ALSIWDCGSPLYDSYELVSFSHVIDRHLMAL--PHLGGSKH-FISRFSHANNAVTSMESN 75

Query: 63  APSSDAVGSTPSTTVV------------AAVVGGTKQKLKKIKIVRLFANFSRIGSWRKR 111
           AP  +  GS    T +              ++G  +++  + K   L A F RIG WRK+
Sbjct: 76  APRGNLKGSAMVATSLDKFDVIRKTWNGKMIMGSGREENPEKKKTWLPALFKRIGLWRKQ 133

BLAST of MS005873 vs. TAIR 10
Match: AT3G61660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46375.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 4.3e-08
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 6  VWDCGSPLYDSYELASLGHVIDRNLMALP 35
          +WDCGSPLYDSYEL SL H+I+R+ M+LP
Sbjct: 9  LWDCGSPLYDSYELVSLTHIIERHFMSLP 37

BLAST of MS005873 vs. TAIR 10
Match: AT2G46375.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61660.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-05
Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 0

Query: 6  VWDCGSPLYDSYELASLGHVIDRNLMALPP 36
          +WDC S LYDSYEL S  H+I+R LM   P
Sbjct: 23 IWDCDSTLYDSYELVSFVHIIERKLMPFSP 52

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8650237.16.5e-2259.46hypothetical protein Csa_011169 [Cucumis sativus][more]
KAG6597095.11.4e-2161.00Protein ENHANCED DISEASE RESISTANCE 4, partial [Cucurbita argyrosperma subsp. so... [more]
TYK17659.11.4e-2155.96glycosyltransferase family 28 protein [Cucumis melo var. makuwa][more]
KAA0048909.11.4e-2155.96glycosyltransferase family 28 protein [Cucumis melo var. makuwa][more]
PRQ58407.11.9e-1341.32hypothetical protein RchiOBHm_Chr1g0358991 [Rosa chinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3773.1e-2259.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119750 PE=4 SV=1[more]
A0A5A7U6117.0e-2255.96Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3D3M17.0e-2255.96Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A2P6SIA69.1e-1441.32Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0358991 PE=4... [more]
A0A6A1W2Z65.0e-1242.15Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G011159 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G61660.14.3e-0872.41unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G46375.11.5e-0560.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33978SERINE/THREONINE-KINASEcoord: 3..100
NoneNo IPR availablePANTHERPTHR33978:SF14SUBFAMILY NOT NAMEDcoord: 3..100

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005873.1MS005873.1mRNA