MS005873 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TCAATGGCATTGGGTGTTTGGGACTGTGGCAGTCCATTATATGACTCCTACGAGCTGGCCTCCCTCGGCCACGTCATCGACCGGAATCTCATGGCATTGCCGCCGCCCTATCTCGGCGGATCACGGCGGTTCTTCCTCAACAAAGTCTCCCACTTCCACTCCTCCGATTCCATCCCATCACCCGCGCCGTCGTCCGATGCGGTGGGATCCACGCCCTCCACCACCGTGGTCGCCGCCGTGGTGGGCGGAACGAAGCAGAAGCTCAAGAAAATCAAAATTGTGAGGCTATTTGCAAATTTTAGCAGGATCGGATCTTGGAGGAAGAGGCAAATCCAAGTA TCAATGGCATTGGGTGTTTGGGACTGTGGCAGTCCATTATATGACTCCTACGAGCTGGCCTCCCTCGGCCACGTCATCGACCGGAATCTCATGGCATTGCCGCCGCCCTATCTCGGCGGATCACGGCGGTTCTTCCTCAACAAAGTCTCCCACTTCCACTCCTCCGATTCCATCCCATCACCCGCGCCGTCGTCCGATGCGGTGGGATCCACGCCCTCCACCACCGTGGTCGCCGCCGTGGTGGGCGGAACGAAGCAGAAGCTCAAGAAAATCAAAATTGTGAGGCTATTTGCAAATTTTAGCAGGATCGGATCTTGGAGGAAGAGGCAAATCCAAGTA TCAATGGCATTGGGTGTTTGGGACTGTGGCAGTCCATTATATGACTCCTACGAGCTGGCCTCCCTCGGCCACGTCATCGACCGGAATCTCATGGCATTGCCGCCGCCCTATCTCGGCGGATCACGGCGGTTCTTCCTCAACAAAGTCTCCCACTTCCACTCCTCCGATTCCATCCCATCACCCGCGCCGTCGTCCGATGCGGTGGGATCCACGCCCTCCACCACCGTGGTCGCCGCCGTGGTGGGCGGAACGAAGCAGAAGCTCAAGAAAATCAAAATTGTGAGGCTATTTGCAAATTTTAGCAGGATCGGATCTTGGAGGAAGAGGCAAATCCAAGTA SMALGVWDCGSPLYDSYELASLGHVIDRNLMALPPPYLGGSRRFFLNKVSHFHSSDSIPSPAPSSDAVGSTPSTTVVAAVVGGTKQKLKKIKIVRLFANFSRIGSWRKRQIQV Homology
BLAST of MS005873 vs. NCBI nr
Match: KAE8650237.1 (hypothetical protein Csa_011169 [Cucumis sativus]) HSP 1 Score: 114.4 bits (285), Expect = 6.5e-22 Identity = 66/111 (59.46%), Postives = 72/111 (64.86%), Query Frame = 0
BLAST of MS005873 vs. NCBI nr
Match: KAG6597095.1 (Protein ENHANCED DISEASE RESISTANCE 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21 Identity = 61/100 (61.00%), Postives = 67/100 (67.00%), Query Frame = 0
BLAST of MS005873 vs. NCBI nr
Match: TYK17659.1 (glycosyltransferase family 28 protein [Cucumis melo var. makuwa]) HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21 Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 0
BLAST of MS005873 vs. NCBI nr
Match: KAA0048909.1 (glycosyltransferase family 28 protein [Cucumis melo var. makuwa]) HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21 Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 0
BLAST of MS005873 vs. NCBI nr
Match: PRQ58407.1 (hypothetical protein RchiOBHm_Chr1g0358991 [Rosa chinensis]) HSP 1 Score: 86.3 bits (212), Expect = 1.9e-13 Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 0
BLAST of MS005873 vs. ExPASy TrEMBL
Match: A0A0A0L377 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119750 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 3.1e-22 Identity = 66/111 (59.46%), Postives = 72/111 (64.86%), Query Frame = 0
BLAST of MS005873 vs. ExPASy TrEMBL
Match: A0A5A7U611 (Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001280 PE=4 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 7.0e-22 Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 0
BLAST of MS005873 vs. ExPASy TrEMBL
Match: A0A5D3D3M1 (Glycosyltransferase family 28 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G005310 PE=4 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 7.0e-22 Identity = 61/109 (55.96%), Postives = 71/109 (65.14%), Query Frame = 0
BLAST of MS005873 vs. ExPASy TrEMBL
Match: A0A2P6SIA6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr1g0358991 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 9.1e-14 Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 0
BLAST of MS005873 vs. ExPASy TrEMBL
Match: A0A6A1W2Z6 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G011159 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 5.0e-12 Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 0
BLAST of MS005873 vs. TAIR 10
Match: AT3G61660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46375.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 55.1 bits (131), Expect = 4.3e-08 Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0
BLAST of MS005873 vs. TAIR 10
Match: AT2G46375.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G61660.1); Has 12 Blast hits to 12 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 46.6 bits (109), Expect = 1.5e-05 Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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