MS005861 (gene) Bitter gourd (TR) v1

Overview


Name	MS005861
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	NDR1/HIN1-like protein 6
Location	scaffold254: 2075863 .. 2076591 (+)
RNA-Seq Expression	MS005861
Synteny	MS005861

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCGCCATTGAAACCCATCCTCCAGAAGCCTCCGGGGTATAAACCCCCAAATCTCGCCGCTCAACCGGTCCCGAGACCGCCGCCCAGGAAATTACCGATTCTCCCCTCACCGCGGAAGAACCGACGGAGCTGCTGCCGGAGATTCTGTTGCTTCCTCTGCTTTTTCGTCCTGTTCCTGATCGTCGTGATCGTCGCCGCCGGCGGGGTTTTATACCTCTGGTTCGACCCCAAACTCCCCGTATTTCACCTCCAATCGTTCCGGATCTCCAAATTCAACGTCACCGACAAACCGGACGGCTCGTATTTAGACGCCAAAACAATCGGTCGGATCGAGGTCAAGAACCCTAACTCCAAGCTATCGCTAAATTACGGCGATATCGAGGTCGAAATCGGCGCCGGCGCCGGAGAAGGCGGTCGTACTGAATTGGGATCGACGACGGTCCCGGGGTTCGTTCAATCGAAGGAGAACACGACGAGTTTGAAAGTGGAAACAGGGGTTAGCAACGAAGTCGTCGACGGCGGAGCCGGGAGGAAGCTGAACTCCGGCAACCGGACCGGAGAGCTGGTGGTGAACGTCGCCGCACGTACGAAAGTCGGATTTCTGGTAGATGGCCGGAGAATGCCGCCAGTGAAGATCGAAGTCACGTGTGGAGGCGTGAACTTGAGAAGTCTCGCGAGAGGAGACTTGCCCAAATGCTCCATTCATCTGCGAAAATGGTTT

mRNA sequence

ATGGCAGAGCCGCCATTGAAACCCATCCTCCAGAAGCCTCCGGGGTATAAACCCCCAAATCTCGCCGCTCAACCGGTCCCGAGACCGCCGCCCAGGAAATTACCGATTCTCCCCTCACCGCGGAAGAACCGACGGAGCTGCTGCCGGAGATTCTGTTGCTTCCTCTGCTTTTTCGTCCTGTTCCTGATCGTCGTGATCGTCGCCGCCGGCGGGGTTTTATACCTCTGGTTCGACCCCAAACTCCCCGTATTTCACCTCCAATCGTTCCGGATCTCCAAATTCAACGTCACCGACAAACCGGACGGCTCGTATTTAGACGCCAAAACAATCGGTCGGATCGAGGTCAAGAACCCTAACTCCAAGCTATCGCTAAATTACGGCGATATCGAGGTCGAAATCGGCGCCGGCGCCGGAGAAGGCGGTCGTACTGAATTGGGATCGACGACGGTCCCGGGGTTCGTTCAATCGAAGGAGAACACGACGAGTTTGAAAGTGGAAACAGGGGTTAGCAACGAAGTCGTCGACGGCGGAGCCGGGAGGAAGCTGAACTCCGGCAACCGGACCGGAGAGCTGGTGGTGAACGTCGCCGCACGTACGAAAGTCGGATTTCTGGTAGATGGCCGGAGAATGCCGCCAGTGAAGATCGAAGTCACGTGTGGAGGCGTGAACTTGAGAAGTCTCGCGAGAGGAGACTTGCCCAAATGCTCCATTCATCTGCGAAAATGGTTT

Coding sequence (CDS)

ATGGCAGAGCCGCCATTGAAACCCATCCTCCAGAAGCCTCCGGGGTATAAACCCCCAAATCTCGCCGCTCAACCGGTCCCGAGACCGCCGCCCAGGAAATTACCGATTCTCCCCTCACCGCGGAAGAACCGACGGAGCTGCTGCCGGAGATTCTGTTGCTTCCTCTGCTTTTTCGTCCTGTTCCTGATCGTCGTGATCGTCGCCGCCGGCGGGGTTTTATACCTCTGGTTCGACCCCAAACTCCCCGTATTTCACCTCCAATCGTTCCGGATCTCCAAATTCAACGTCACCGACAAACCGGACGGCTCGTATTTAGACGCCAAAACAATCGGTCGGATCGAGGTCAAGAACCCTAACTCCAAGCTATCGCTAAATTACGGCGATATCGAGGTCGAAATCGGCGCCGGCGCCGGAGAAGGCGGTCGTACTGAATTGGGATCGACGACGGTCCCGGGGTTCGTTCAATCGAAGGAGAACACGACGAGTTTGAAAGTGGAAACAGGGGTTAGCAACGAAGTCGTCGACGGCGGAGCCGGGAGGAAGCTGAACTCCGGCAACCGGACCGGAGAGCTGGTGGTGAACGTCGCCGCACGTACGAAAGTCGGATTTCTGGTAGATGGCCGGAGAATGCCGCCAGTGAAGATCGAAGTCACGTGTGGAGGCGTGAACTTGAGAAGTCTCGCGAGAGGAGACTTGCCCAAATGCTCCATTCATCTGCGAAAATGGTTT

Protein sequence

MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSPRKNRRSCCRRFCCFLCFFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVKNPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDGGAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKCSIHLRKWF

Homology

[Close]

BLAST of MS005861 vs. NCBI nr
Match: XP_022147430.1 (NDR1/HIN1-like protein 6 [Momordica charantia])

HSP 1 Score: 482.6 bits (1241), Expect = 1.9e-132
Identity = 241/243 (99.18%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSPRKNRRSCCRRFCCFLCFFVL 60
           MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSPRKNRRSCCRRFCCFLCFFVL
Sbjct: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSPRKNRRSCCRRFCCFLCFFVL 60

Query: 61  FLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVKNPNS 120
           FLIVVIVAAGGV YLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVKNPNS
Sbjct: 61  FLIVVIVAAGGVSYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVKNPNS 120

Query: 121 KLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDGGAGR 180
           KLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDGGAGR
Sbjct: 121 KLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDGGAGR 180

Query: 181 KLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKCSIHLR 240
           KLNSGNRTGELVVNVAARTKVGFLVDGRR+PPVKIEVTCGGVNLRSLARGDLPKCSIHLR
Sbjct: 181 KLNSGNRTGELVVNVAARTKVGFLVDGRRIPPVKIEVTCGGVNLRSLARGDLPKCSIHLR 240

Query: 241 KWF 244
           KWF
Sbjct: 241 KWF 243

[Close]

BLAST of MS005861 vs. NCBI nr
Match: XP_023526806.1 (NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.6 bits (963), Expect = 3.3e-100
Identity = 195/247 (78.95%), Postives = 210/247 (85.02%), Query Frame = 0


Query: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSP----RKNRRSCCRRFCCFLC 60
           MAEPPLKP+LQKPPGYK PNL A PVPRPP RKL ILPSP     K RRSCCRRFCCFLC
Sbjct: 1   MAEPPLKPVLQKPPGYKDPNLTAPPVPRPPVRKL-ILPSPLSQNNKKRRSCCRRFCCFLC 60

Query: 61  FFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVK 120
            FV+ LIVVIVAAGG LYLWF+PKLPVFHLQSFRISKFNVTDK DGSYL+AKTIGRIE+K
Sbjct: 61  LFVVILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120

Query: 121 NPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDG 180
           NPN KLSLNY DIEV     AGEG R ELGST VP F+QSKENTTS K+ET VSNE+VDG
Sbjct: 121 NPNEKLSLNYRDIEVV--TAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDG 180

Query: 181 GAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKCS 240
           GAGRKLNSGNRTGELVV V ARTK+GF+V+GRRMP VKIEV CGGV+L+ L  G+ PKCS
Sbjct: 181 GAGRKLNSGNRTGELVVIVEARTKIGFVVNGRRMPRVKIEVACGGVSLKRLDGGNTPKCS 240

Query: 241 IHLRKWF 244
           IHL +WF
Sbjct: 241 IHLPRWF 244

[Close]

BLAST of MS005861 vs. NCBI nr
Match: KAG6582649.1 (NDR1/HIN1-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019045.1 NDR1/HIN1-like protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 374.0 bits (959), Expect = 9.7e-100
Identity = 194/247 (78.54%), Postives = 208/247 (84.21%), Query Frame = 0


Query: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSP----RKNRRSCCRRFCCFLC 60
           MAEPPLKP+LQKPPGYK PNL A PVPRPP RKL ILPSP     K RRSCCRRFCCFLC
Sbjct: 1   MAEPPLKPVLQKPPGYKDPNLTAPPVPRPPARKL-ILPSPLSQNNKKRRSCCRRFCCFLC 60

Query: 61  FFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVK 120
            FVL LIVVIVA GG LYLWF+PKLPVFHLQSFRISKFNVTDK DGSYL+AKTIGRIE+K
Sbjct: 61  LFVLILIVVIVAVGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120

Query: 121 NPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDG 180
           NPN KLSLNY DIEV     AGEG R ELGST VP F+QSKENTTS K+ET VSNE+VDG
Sbjct: 121 NPNEKLSLNYRDIEVV--TAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDG 180

Query: 181 GAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKCS 240
           GAGRKLNSGNRTGEL+V V ARTK+GF+V+GRRMP VKIEV CGGV L+ L  G+ PKCS
Sbjct: 181 GAGRKLNSGNRTGELMVIVEARTKIGFVVNGRRMPRVKIEVACGGVRLKRLDGGNTPKCS 240

Query: 241 IHLRKWF 244
           IHL +WF
Sbjct: 241 IHLPRWF 244

[Close]

BLAST of MS005861 vs. NCBI nr
Match: XP_022979612.1 (NDR1/HIN1-like protein 6 [Cucurbita maxima])

HSP 1 Score: 370.9 bits (951), Expect = 8.2e-99
Identity = 192/247 (77.73%), Postives = 209/247 (84.62%), Query Frame = 0


Query: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSP----RKNRRSCCRRFCCFLC 60
           MAEPPLKP+LQKPPGYK PNL A PVPRPP RKL ILPSP     K RRSCCRRFCCFLC
Sbjct: 1   MAEPPLKPVLQKPPGYKDPNLTAPPVPRPPARKL-ILPSPLSQNNKKRRSCCRRFCCFLC 60

Query: 61  FFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVK 120
            FVL LIVVIVAAGG LYLWF+PKLPVFHLQSFRISKFNVTDK DGSYL+AKTIGRIE+K
Sbjct: 61  LFVLILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120

Query: 121 NPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDG 180
           NPN KLSLNY DIEV     AGEG R ELGST VP F+ SKENTTS K+ET VSNE+VDG
Sbjct: 121 NPNEKLSLNYRDIEVV--TAAGEGTRIELGSTIVPSFIHSKENTTSWKIETMVSNEIVDG 180

Query: 181 GAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKCS 240
           GAGRKLNSGN+TGELVV V ARTK+GF+++GRR P VKIEV+CGGV+L+ L  G+ PKCS
Sbjct: 181 GAGRKLNSGNKTGELVVIVEARTKIGFVLNGRRTPRVKIEVSCGGVSLKRLDGGNTPKCS 240

Query: 241 IHLRKWF 244
           IHL +WF
Sbjct: 241 IHLPRWF 244

[Close]

BLAST of MS005861 vs. NCBI nr
Match: XP_022924638.1 (NDR1/HIN1-like protein 6 [Cucurbita moschata])

HSP 1 Score: 369.8 bits (948), Expect = 1.8e-98
Identity = 192/247 (77.73%), Postives = 207/247 (83.81%), Query Frame = 0


Query: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSP----RKNRRSCCRRFCCFLC 60
           MAEPPLKP+LQKPPGYK PNL A PVPRPP RKL ILPS      K RRSCCRRFCCFLC
Sbjct: 1   MAEPPLKPVLQKPPGYKDPNLTAPPVPRPPARKL-ILPSSLSQNNKKRRSCCRRFCCFLC 60

Query: 61  FFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVK 120
            FVL LIVVIVA GG LYLWF+PKLPVFHLQSFRISKFNVTDK DGSYL+AKTIGRIE+K
Sbjct: 61  LFVLILIVVIVAVGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120

Query: 121 NPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDG 180
           NPN KLSLNY DIEV     AGEG R ELGST VP F+QSKENTTS K+ET VSNE+VDG
Sbjct: 121 NPNEKLSLNYRDIEVV--TAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDG 180

Query: 181 GAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKCS 240
           GAGRKLNSGNRTGEL++ V ARTK+GF+V+GRRMP VKIEV CGGV L+ L  G+ PKCS
Sbjct: 181 GAGRKLNSGNRTGELMMIVEARTKIGFVVNGRRMPRVKIEVACGGVRLKRLDGGNTPKCS 240

Query: 241 IHLRKWF 244
           IHL +WF
Sbjct: 241 IHLPRWF 244

[Close]

BLAST of MS005861 vs. ExPASy Swiss-Prot
Match: Q8LD98 (NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-13
Identity = 69/221 (31.22%), Postives = 105/221 (47.51%), Query Frame = 0


Query: 25  PVPRPPPRKLPILPSPRKNRRSCCRRFCCFLCFFVLFLIVVIVAAGGVLYLWFDPKLPVF 84
           P+ + P R +P+ P P+K R  CCR FC   C F+L L+V + A+ G+LYL F PKLP +
Sbjct: 41  PLNQRPQRFVPLAP-PKKRRSCCCRCFCYTFC-FLLLLVVAVGASIGILYLVFKPKLPDY 100

Query: 85  HLQSFRISKFNVTDKPDGSYLDAKTIGRIEVKNPNSKLSLNYGDIEVEIGAGAGEGGRTE 144
            +   ++++F +    D S   A  +  I  KNPN K+ + Y D   +I     E    +
Sbjct: 101 SIDRLQLTRFALNQ--DSSLTTAFNV-TITAKNPNEKIGIYYED-GSKITVWYME---HQ 160

Query: 145 LGSTTVPGFVQSKENTTSLKVETGVSNEVVDGGAGRKLNSGNRTGELVVNVAARTKVGFL 204
           L + ++P F Q  ENTT + VE     +   G          RTG + + +     V   
Sbjct: 161 LSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIRVNQPVRVK 220

Query: 205 VDGRRMPPVKIEVTCGGVNLRSLARGDLPK-----CSIHLR 241
               ++  V+  V C GV + SLA  ++ K     C   LR
Sbjct: 221 FGKLKLFEVRFLVRC-GVFVDSLATNNVIKIQSSSCKFRLR 251

[Close]

BLAST of MS005861 vs. ExPASy TrEMBL
Match: A0A6J1D054 (NDR1/HIN1-like protein 6 OS=Momordica charantia OX=3673 GN=LOC111016357 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 9.4e-133
Identity = 241/243 (99.18%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSPRKNRRSCCRRFCCFLCFFVL 60
           MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSPRKNRRSCCRRFCCFLCFFVL
Sbjct: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSPRKNRRSCCRRFCCFLCFFVL 60

Query: 61  FLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVKNPNS 120
           FLIVVIVAAGGV YLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVKNPNS
Sbjct: 61  FLIVVIVAAGGVSYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVKNPNS 120

Query: 121 KLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDGGAGR 180
           KLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDGGAGR
Sbjct: 121 KLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDGGAGR 180

Query: 181 KLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKCSIHLR 240
           KLNSGNRTGELVVNVAARTKVGFLVDGRR+PPVKIEVTCGGVNLRSLARGDLPKCSIHLR
Sbjct: 181 KLNSGNRTGELVVNVAARTKVGFLVDGRRIPPVKIEVTCGGVNLRSLARGDLPKCSIHLR 240

Query: 241 KWF 244
           KWF
Sbjct: 241 KWF 243

[Close]

BLAST of MS005861 vs. ExPASy TrEMBL
Match: A0A6J1IP67 (NDR1/HIN1-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC111479287 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 4.0e-99
Identity = 192/247 (77.73%), Postives = 209/247 (84.62%), Query Frame = 0


Query: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSP----RKNRRSCCRRFCCFLC 60
           MAEPPLKP+LQKPPGYK PNL A PVPRPP RKL ILPSP     K RRSCCRRFCCFLC
Sbjct: 1   MAEPPLKPVLQKPPGYKDPNLTAPPVPRPPARKL-ILPSPLSQNNKKRRSCCRRFCCFLC 60

Query: 61  FFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVK 120
            FVL LIVVIVAAGG LYLWF+PKLPVFHLQSFRISKFNVTDK DGSYL+AKTIGRIE+K
Sbjct: 61  LFVLILIVVIVAAGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120

Query: 121 NPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDG 180
           NPN KLSLNY DIEV     AGEG R ELGST VP F+ SKENTTS K+ET VSNE+VDG
Sbjct: 121 NPNEKLSLNYRDIEVV--TAAGEGTRIELGSTIVPSFIHSKENTTSWKIETMVSNEIVDG 180

Query: 181 GAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKCS 240
           GAGRKLNSGN+TGELVV V ARTK+GF+++GRR P VKIEV+CGGV+L+ L  G+ PKCS
Sbjct: 181 GAGRKLNSGNKTGELVVIVEARTKIGFVLNGRRTPRVKIEVSCGGVSLKRLDGGNTPKCS 240

Query: 241 IHLRKWF 244
           IHL +WF
Sbjct: 241 IHLPRWF 244

[Close]

BLAST of MS005861 vs. ExPASy TrEMBL
Match: A0A6J1ED23 (NDR1/HIN1-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111432070 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 8.9e-99
Identity = 192/247 (77.73%), Postives = 207/247 (83.81%), Query Frame = 0


Query: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSP----RKNRRSCCRRFCCFLC 60
           MAEPPLKP+LQKPPGYK PNL A PVPRPP RKL ILPS      K RRSCCRRFCCFLC
Sbjct: 1   MAEPPLKPVLQKPPGYKDPNLTAPPVPRPPARKL-ILPSSLSQNNKKRRSCCRRFCCFLC 60

Query: 61  FFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEVK 120
            FVL LIVVIVA GG LYLWF+PKLPVFHLQSFRISKFNVTDK DGSYL+AKTIGRIE+K
Sbjct: 61  LFVLILIVVIVAVGGFLYLWFEPKLPVFHLQSFRISKFNVTDKADGSYLNAKTIGRIEIK 120

Query: 121 NPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVDG 180
           NPN KLSLNY DIEV     AGEG R ELGST VP F+QSKENTTS K+ET VSNE+VDG
Sbjct: 121 NPNEKLSLNYRDIEVV--TAAGEGTRIELGSTIVPSFIQSKENTTSWKIETMVSNEIVDG 180

Query: 181 GAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKCS 240
           GAGRKLNSGNRTGEL++ V ARTK+GF+V+GRRMP VKIEV CGGV L+ L  G+ PKCS
Sbjct: 181 GAGRKLNSGNRTGELMMIVEARTKIGFVVNGRRMPRVKIEVACGGVRLKRLDGGNTPKCS 240

Query: 241 IHLRKWF 244
           IHL +WF
Sbjct: 241 IHLPRWF 244

[Close]

BLAST of MS005861 vs. ExPASy TrEMBL
Match: A0A5A7U5Q0 (Protein YLS9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001400 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.2e-98
Identity = 193/248 (77.82%), Postives = 212/248 (85.48%), Query Frame = 0


Query: 1   MAEP-PLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSP----RKNRRSCCRRFCCFL 60
           MAEP PLKPILQKPPG+K PN  A PVPRPP RKL ILPSP     K RRSC RR CCF 
Sbjct: 1   MAEPTPLKPILQKPPGFKDPNHTALPVPRPPARKL-ILPSPLSQKNKKRRSCWRRCCCFF 60

Query: 61  CFFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEV 120
           C FVL LIVVI+A GGVLYLWF+PKLPV HLQSFRISKFNVTDK DGSYL+AKTIGRIE+
Sbjct: 61  CLFVLILIVVILAVGGVLYLWFEPKLPVVHLQSFRISKFNVTDKSDGSYLNAKTIGRIEI 120

Query: 121 KNPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVD 180
           KNPNSKLSLNYGDIEV++   AGEG RTELGS  VP F+QS+ENTTSLK+ET V+NE VD
Sbjct: 121 KNPNSKLSLNYGDIEVQV--AAGEGTRTELGSMIVPSFIQSEENTTSLKIETMVNNETVD 180

Query: 181 GGAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKC 240
            GAGR LNSGNRTGELVVNV ARTK+GF+V+GRRMPPVKIEVTCG V+L+ L RG++PKC
Sbjct: 181 DGAGRYLNSGNRTGELVVNVEARTKIGFVVEGRRMPPVKIEVTCGSVSLKRLDRGNVPKC 240

Query: 241 SIHLRKWF 244
           SIHLR+WF
Sbjct: 241 SIHLRRWF 245

[Close]

BLAST of MS005861 vs. ExPASy TrEMBL
Match: A0A0A0L3Z7 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G120370 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.4e-98
Identity = 193/248 (77.82%), Postives = 210/248 (84.68%), Query Frame = 0


Query: 1   MAE-PPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPILPSP----RKNRRSCCRRFCCFL 60
           MAE PPLKPILQKPPG+K PN  A PVPRPP RKL ILPSP     K RRSC RR CCF 
Sbjct: 1   MAEPPPLKPILQKPPGFKDPNHIALPVPRPPARKL-ILPSPLSQKNKKRRSCWRRCCCFF 60

Query: 61  CFFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGRIEV 120
           C  VL LIV I+A GGVLYLWF+PKLPV HLQSFRISKFNVTDK DGSYL+AKTIGRIE+
Sbjct: 61  CLLVLILIVAILAVGGVLYLWFEPKLPVVHLQSFRISKFNVTDKSDGSYLNAKTIGRIEI 120

Query: 121 KNPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNEVVD 180
           KNPNSKLSLNYGDIEV+I   AGEG RTELGS  VP F+QS+ENTTSLK+ET VSNE VD
Sbjct: 121 KNPNSKLSLNYGDIEVQI--AAGEGTRTELGSMIVPSFIQSEENTTSLKIETMVSNETVD 180

Query: 181 GGAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDLPKC 240
            GAGR LNSGNRTGELVVNV ARTK+GF+VDGRRMPPVKIEV+CG V+L+ L RG++PKC
Sbjct: 181 DGAGRNLNSGNRTGELVVNVEARTKIGFVVDGRRMPPVKIEVSCGSVSLKRLDRGNVPKC 240

Query: 241 SIHLRKWF 244
           SIHLR+WF
Sbjct: 241 SIHLRRWF 245

[Close]

BLAST of MS005861 vs. TAIR 10
Match: AT2G46300.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 206.1 bits (523), Expect = 3.3e-53
Identity = 108/250 (43.20%), Postives = 161/250 (64.40%), Query Frame = 0


Query: 1   MAEPPLKPILQKPPGYKPPNLAAQPVPRPPPRKLPI-----LPS---PRKNRRSCCRRFC 60
           MA+  + P+LQKPPGY+ PN+++ P P PP ++ P+     +P+   P+K RRSCCR  C
Sbjct: 1   MADYQMNPVLQKPPGYRDPNMSSPPPPPPPIQQQPMRKAVPMPTSYRPKKKRRSCCRFCC 60

Query: 61  CFLCFFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDGSYLDAKTIGR 120
           C +C  ++  I +++    V YLWFDPKLP F L SFR+  F + D PDG+ L A  + R
Sbjct: 61  CCICITLVLFIFLLLVGTAVFYLWFDPKLPTFSLASFRLDGFKLADDPDGASLSATAVAR 120

Query: 121 IEVKNPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVSNE 180
           +E+KNPNSKL   YG+  V++  G+G    T +G TT+ GF Q  +N+TS+KVET V N+
Sbjct: 121 VEMKNPNSKLVFYYGNTAVDLSVGSG-NDETGMGETTMNGFRQGPKNSTSVKVETTVKNQ 180

Query: 181 VVDGGAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARGDL 240
           +V+ G  ++L +  ++ +LV+NV A+TKVG  V G ++  + + + CGGV+L  L   D 
Sbjct: 181 LVERGLAKRLAAKFQSKDLVINVVAKTKVGLGVGGIKIGMLAVNLRCGGVSLNKLDT-DS 240

Query: 241 PKCSIHLRKW 243
           PKC ++  KW
Sbjct: 241 PKCILNTLKW 248

[Close]

BLAST of MS005861 vs. TAIR 10
Match: AT1G01453.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 156.4 bits (394), Expect = 3.0e-38
Identity = 100/253 (39.53%), Postives = 147/253 (58.10%), Query Frame = 0


Query: 2   AEPPLKPILQKPPGYK--------PPNLAAQPVPRPPPRKLPILPSPRKNRRSCCRRFCC 61
           AE PL+P LQKPPG++        PP+  A  +PR  PR  PI P+ +K R S CR FCC
Sbjct: 16  AEKPLQPALQKPPGFRDQQNQPSAPPSGTA-TLPRRRPR--PIHPADKKRRCSFCRVFCC 75

Query: 62  FLCFFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTD--KPDG-SYLDAKTI 121
            +C     ++++I+ A  V +LW+ PKLPV  L SF+IS FN +D    DG S+L A T 
Sbjct: 76  CVCILFAVILLLILIAVAVFFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTT 135

Query: 122 GRIEVKNPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVS 181
             ++ +NPN KL+  YGD +V +  G  +   T L ST V GF++   N T++ V T V 
Sbjct: 136 SVLDFRNPNGKLTFYYGDTDVAVILGE-KDFETNLESTKVKGFIEKPGNRTAVIVPTTVR 195

Query: 182 NEVVDGGAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARG 241
              VD    ++L    ++ +L+V V A+TKVG  V  R++  V + + CGGV L++L   
Sbjct: 196 KRQVDDPTAKRLQVELKSKKLLVTVTAKTKVGLAVGSRKIVTVGVSLRCGGVILQTL-DS 255

Query: 242 DLPKCSIHLRKWF 244
            + +C+I + KW+
Sbjct: 256 KMAQCTIKMLKWY 263

[Close]

BLAST of MS005861 vs. TAIR 10
Match: AT1G01453.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 155.2 bits (391), Expect = 6.6e-38
Identity = 100/252 (39.68%), Postives = 146/252 (57.94%), Query Frame = 0


Query: 2   AEPPLKPILQKPPGYK--------PPNLAAQPVPRPPPRKLPILPSPRKNRRSCCRRFCC 61
           AE PL+P LQKPPG++        PP+  A  +PR  PR  PI P+ +K R S CR FCC
Sbjct: 16  AEKPLQPALQKPPGFRDQQNQPSAPPSGTA-TLPRRRPR--PIHPADKKRRCSFCRVFCC 75

Query: 62  FLCFFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTD--KPDG-SYLDAKTI 121
            +C     ++++I+ A  V +LW+ PKLPV  L SF+IS FN +D    DG S+L A T 
Sbjct: 76  CVCILFAVILLLILIAVAVFFLWYSPKLPVVRLASFKISNFNFSDGKSDDGWSFLSADTT 135

Query: 122 GRIEVKNPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKVETGVS 181
             ++ +NPN KL+  YGD +V +  G  +   T L ST V GF++   N T++ V T V 
Sbjct: 136 SVLDFRNPNGKLTFYYGDTDVAVILGE-KDFETNLESTKVKGFIEKPGNRTAVIVPTTVR 195

Query: 182 NEVVDGGAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLRSLARG 241
              VD    ++L    ++ +L+V V A+TKVG  V  R++  V + + CGGV L++L   
Sbjct: 196 KRQVDDPTAKRLQVELKSKKLLVTVTAKTKVGLAVGSRKIVTVGVSLRCGGVILQTL-DS 255

Query: 242 DLPKCSIHLRKW 243
            + +C+I + KW
Sbjct: 256 KMAQCTIKMLKW 262

[Close]

BLAST of MS005861 vs. TAIR 10
Match: AT4G01110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01453.1); Has 273 Blast hits to 272 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-36
Identity = 96/257 (37.35%), Postives = 143/257 (55.64%), Query Frame = 0


Query: 3   EPPLKPILQKPPGYKPPNLAAQP-------------VPRPPPRKLPILPSPRKNRR-SCC 62
           E  LKP+LQKPPGY+   L +QP             + RPP   +P    P K R+ S C
Sbjct: 4   ETLLKPVLQKPPGYR--ELHSQPQTPLGSSSSSSSMLRRPPKHAIPAAFYPTKKRQWSRC 63

Query: 63  RRFCCFLCFFVLFLIVVIVAAGGVLYLWFDPKLPVFHLQSFRISKFNVTDKPDG---SYL 122
           R FCC +C  V  +I++++    V +L++ P+LPV  L SFR+S FN +    G   S L
Sbjct: 64  RVFCCCVCITVAIVILLLILTVSVFFLYYSPRLPVVRLSSFRVSNFNFSGGKAGDGLSQL 123

Query: 123 DAKTIGRIEVKNPNSKLSLNYGDIEVEIGAGAGEGGRTELGSTTVPGFVQSKENTTSLKV 182
            A+   R++ +NPN KL   YG+++V +  G  +   T LGST V GFV+   N T + V
Sbjct: 124 TAEATARLDFRNPNGKLRYYYGNVDVAVSVGE-DDFETSLGSTKVKGFVEKPGNRTVVIV 183

Query: 183 ETGVSNEVVDGGAGRKLNSGNRTGELVVNVAARTKVGFLVDGRRMPPVKIEVTCGGVNLR 242
              V  + VD    ++L +  ++ +LVV V A+TKVG  V  R++  V + ++CGGV L+
Sbjct: 184 PIKVKKQQVDDPTVKRLRADMKSKKLVVKVMAKTKVGLGVGRRKIVTVGVTISCGGVRLQ 243

[Close]

BLAST of MS005861 vs. TAIR 10
Match: AT1G65690.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-14
Identity = 69/221 (31.22%), Postives = 105/221 (47.51%), Query Frame = 0


Query: 25  PVPRPPPRKLPILPSPRKNRRSCCRRFCCFLCFFVLFLIVVIVAAGGVLYLWFDPKLPVF 84
           P+ + P R +P+ P P+K R  CCR FC   C F+L L+V + A+ G+LYL F PKLP +
Sbjct: 41  PLNQRPQRFVPLAP-PKKRRSCCCRCFCYTFC-FLLLLVVAVGASIGILYLVFKPKLPDY 100

Query: 85  HLQSFRISKFNVTDKPDGSYLDAKTIGRIEVKNPNSKLSLNYGDIEVEIGAGAGEGGRTE 144
            +   ++++F +    D S   A  +  I  KNPN K+ + Y D   +I     E    +
Sbjct: 101 SIDRLQLTRFALNQ--DSSLTTAFNV-TITAKNPNEKIGIYYED-GSKITVWYME---HQ 160

Query: 145 LGSTTVPGFVQSKENTTSLKVETGVSNEVVDGGAGRKLNSGNRTGELVVNVAARTKVGFL 204
           L + ++P F Q  ENTT + VE     +   G          RTG + + +     V   
Sbjct: 161 LSNGSLPKFYQGHENTTVIYVEMTGQTQNASGLRTTLEEQQQRTGNIPLRIRVNQPVRVK 220

Query: 205 VDGRRMPPVKIEVTCGGVNLRSLARGDLPK-----CSIHLR 241
               ++  V+  V C GV + SLA  ++ K     C   LR
Sbjct: 221 FGKLKLFEVRFLVRC-GVFVDSLATNNVIKIQSSSCKFRLR 251

The following BLAST results are available for this feature:

BLAST of MS005861 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147430.1	1.9e-132	99.18	NDR1/HIN1-like protein 6 [Momordica charantia]	[more]
XP_023526806.1	3.3e-100	78.95	NDR1/HIN1-like protein 6 [Cucurbita pepo subsp. pepo]	[more]
KAG6582649.1	9.7e-100	78.54	NDR1/HIN1-like protein 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG70...	[more]
XP_022979612.1	8.2e-99	77.73	NDR1/HIN1-like protein 6 [Cucurbita maxima]	[more]
XP_022924638.1	1.8e-98	77.73	NDR1/HIN1-like protein 6 [Cucurbita moschata]	[more]

BLAST of MS005861 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LD98	2.5e-13	31.22	NDR1/HIN1-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=NHL6 PE=1 SV=1	[more]

BLAST of MS005861 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D054	9.4e-133	99.18	NDR1/HIN1-like protein 6 OS=Momordica charantia OX=3673 GN=LOC111016357 PE=4 SV=...	[more]
A0A6J1IP67	4.0e-99	77.73	NDR1/HIN1-like protein 6 OS=Cucurbita maxima OX=3661 GN=LOC111479287 PE=4 SV=1	[more]
A0A6J1ED23	8.9e-99	77.73	NDR1/HIN1-like protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111432070 PE=4 SV=1	[more]
A0A5A7U5Q0	1.2e-98	77.82	Protein YLS9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0L3Z7	4.4e-98	77.82	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G120370 PE=4 ...	[more]

BLAST of MS005861 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46300.1	3.3e-53	43.20	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G01453.2	3.0e-38	39.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G01453.1	6.6e-38	39.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G01110.1	2.1e-36	37.35	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G65690.1	1.8e-14	31.22	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 113..210 e-value: 1.1E-8 score: 35.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR31234:SF48	SUBFAMILY NOT NAMED	coord: 1..242
None	No IPR available	PANTHER	PTHR31234	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 1..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005861.1	MS005861.1	mRNA