MS005844 (gene) Bitter gourd (TR) v1

Overview


Name	MS005844
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-H2 finger protein ATL67-like
Location	scaffold254: 1967181 .. 1967747 (+)
RNA-Seq Expression	MS005844
Synteny	MS005844

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCCCCTCTTCCTCCAACTACTCCCTCTCCAGGATCGGCCTCGGCTACGCCATCGCCATAGCCCTCGCCTTCCTCGTCCTCCTCTCCGCCCTCCTCCTCGCATTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCCGCCTCCACTCCCGCCCCTCCGCCGCTCCCTCCCGCTCCGATGCCGGCATCATTCTCCCCCAGATCATTTTCGTTGCCGAGGACGACGCCGCCGCCGGCCCAGATCGCGACGATGACAGCGGCGTCGTCGGCCTCGACCAGGCTGTGATCAATTCCTACCCTAAATTCCCCTTCTCCAAGGACAAGACGATGGGCGGCGGGACCAATTGCGTCTGCTCCATCTGCCTCTGTGATTATAAGGAGGCGGAGATGCTGAGGATGATGCCTGAGTGTAGACATTTCTTTCACCTCTGTTGCATCGATGCTTGGTTGAAGCTTAATGGCTCCTGTCCTGTTTGCCGGAATTCGCCGCTCCCGACGCCGCTCTCCACTCCTCTGCAGGAGGTTGTGCCGCTCTCGCAGTACATGGCGGATCGGAGAAGGAGG

mRNA sequence

ATGTCCTCCCCCTCTTCCTCCAACTACTCCCTCTCCAGGATCGGCCTCGGCTACGCCATCGCCATAGCCCTCGCCTTCCTCGTCCTCCTCTCCGCCCTCCTCCTCGCATTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCCGCCTCCACTCCCGCCCCTCCGCCGCTCCCTCCCGCTCCGATGCCGGCATCATTCTCCCCCAGATCATTTTCGTTGCCGAGGACGACGCCGCCGCCGGCCCAGATCGCGACGATGACAGCGGCGTCGTCGGCCTCGACCAGGCTGTGATCAATTCCTACCCTAAATTCCCCTTCTCCAAGGACAAGACGATGGGCGGCGGGACCAATTGCGTCTGCTCCATCTGCCTCTGTGATTATAAGGAGGCGGAGATGCTGAGGATGATGCCTGAGTGTAGACATTTCTTTCACCTCTGTTGCATCGATGCTTGGTTGAAGCTTAATGGCTCCTGTCCTGTTTGCCGGAATTCGCCGCTCCCGACGCCGCTCTCCACTCCTCTGCAGGAGGTTGTGCCGCTCTCGCAGTACATGGCGGATCGGAGAAGGAGG

Coding sequence (CDS)

ATGTCCTCCCCCTCTTCCTCCAACTACTCCCTCTCCAGGATCGGCCTCGGCTACGCCATCGCCATAGCCCTCGCCTTCCTCGTCCTCCTCTCCGCCCTCCTCCTCGCATTCTACGTCTGCTGCCGCGCCTCCCGCTCCCGCCGCCTCCACTCCCGCCCCTCCGCCGCTCCCTCCCGCTCCGATGCCGGCATCATTCTCCCCCAGATCATTTTCGTTGCCGAGGACGACGCCGCCGCCGGCCCAGATCGCGACGATGACAGCGGCGTCGTCGGCCTCGACCAGGCTGTGATCAATTCCTACCCTAAATTCCCCTTCTCCAAGGACAAGACGATGGGCGGCGGGACCAATTGCGTCTGCTCCATCTGCCTCTGTGATTATAAGGAGGCGGAGATGCTGAGGATGATGCCTGAGTGTAGACATTTCTTTCACCTCTGTTGCATCGATGCTTGGTTGAAGCTTAATGGCTCCTGTCCTGTTTGCCGGAATTCGCCGCTCCCGACGCCGCTCTCCACTCCTCTGCAGGAGGTTGTGCCGCTCTCGCAGTACATGGCGGATCGGAGAAGGAGG

Protein sequence

MSSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRSDAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRRRR

Homology

[Close]

BLAST of MS005844 vs. NCBI nr
Match: XP_022147271.1 (RING-H2 finger protein ATL67-like [Momordica charantia])

HSP 1 Score: 382.5 bits (981), Expect = 2.1e-102
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRS 60
           MSSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRS
Sbjct: 1   MSSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRS 60

Query: 61  DAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCS 120
           DAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCS
Sbjct: 61  DAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCS 120

Query: 121 ICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 180
           ICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS
Sbjct: 121 ICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 180

Query: 181 QYMADRRRR 190
           QYMADRRRR
Sbjct: 181 QYMADRRRR 189

[Close]

BLAST of MS005844 vs. NCBI nr
Match: XP_022933391.1 (RING-H2 finger protein ATL67-like [Cucurbita moschata])

HSP 1 Score: 324.3 bits (830), Expect = 6.9e-85
Identity = 167/191 (87.43%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 2   SSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLH---SRPSAAPS 61
           S+ SSSNYS +++GLGYAIAIALAFLVLLSALLLAFYVCCRASRSR L    SRP   PS
Sbjct: 5   STASSSNYSFAKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRP--PPS 64

Query: 62  RSDAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCV 121
           RSDAGIILPQIIFVAEDD A  PDRDDD+GVVGLDQAVINSYPKFPFSKDK+M  G NCV
Sbjct: 65  RSDAGIILPQIIFVAEDDGA--PDRDDDNGVVGLDQAVINSYPKFPFSKDKSM-AGANCV 124

Query: 122 CSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 181
           CSICLC+YKEAEMLRMMPECRH+FHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP
Sbjct: 125 CSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 184

Query: 182 LSQYMADRRRR 190
           LSQYMADRRRR
Sbjct: 185 LSQYMADRRRR 190

[Close]

BLAST of MS005844 vs. NCBI nr
Match: KAG6597116.1 (RING-H2 finger protein ATL68, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028578.1 RING-H2 finger protein ATL68, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.6 bits (828), Expect = 1.2e-84
Identity = 166/191 (86.91%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 2   SSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLH---SRPSAAPS 61
           S+ SSSNYS++++G GYAIAIALAFLVLLSALLLAFYVCCRASRSR L    SRP   PS
Sbjct: 5   STASSSNYSIAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRP--PPS 64

Query: 62  RSDAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCV 121
           RSDAGIILPQIIFVAEDD A  PDRDDD+GVVGLDQAVINSYPKFPFSKDK+M  G NCV
Sbjct: 65  RSDAGIILPQIIFVAEDDGA--PDRDDDNGVVGLDQAVINSYPKFPFSKDKSM-AGANCV 124

Query: 122 CSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 181
           CSICLC+YKEAEMLRMMPECRH+FHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP
Sbjct: 125 CSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 184

Query: 182 LSQYMADRRRR 190
           LSQYMADRRRR
Sbjct: 185 LSQYMADRRRR 190

[Close]

BLAST of MS005844 vs. NCBI nr
Match: XP_022974673.1 (RING-H2 finger protein ATL67-like isoform X2 [Cucurbita maxima] >XP_022974674.1 RING-H2 finger protein ATL67-like isoform X3 [Cucurbita maxima] >XP_022975578.1 RING-H2 finger protein ATL67-like [Cucurbita maxima])

HSP 1 Score: 322.8 bits (826), Expect = 2.0e-84
Identity = 166/191 (86.91%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 2   SSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLH---SRPSAAPS 61
           S+ SSSNYS +++G GYAIAIALAFLVLLSALLLAFYVCCRASRSR L    SRP   PS
Sbjct: 4   STASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRP--PPS 63

Query: 62  RSDAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCV 121
           RSDAGIILPQIIFVAEDD A  PDRDDD+GVVGLDQAVINSYPKFPFSKDK+M  G NCV
Sbjct: 64  RSDAGIILPQIIFVAEDDGA--PDRDDDNGVVGLDQAVINSYPKFPFSKDKSM-AGANCV 123

Query: 122 CSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 181
           CSICLC+YKEAEMLRMMPECRH+FHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP
Sbjct: 124 CSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 183

Query: 182 LSQYMADRRRR 190
           LSQYMADRRRR
Sbjct: 184 LSQYMADRRRR 189

[Close]

BLAST of MS005844 vs. NCBI nr
Match: XP_022974672.1 (RING-H2 finger protein ATL67-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 322.8 bits (826), Expect = 2.0e-84
Identity = 166/191 (86.91%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 2   SSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLH---SRPSAAPS 61
           S+ SSSNYS +++G GYAIAIALAFLVLLSALLLAFYVCCRASRSR L    SRP   PS
Sbjct: 44  STASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRP--PPS 103

Query: 62  RSDAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCV 121
           RSDAGIILPQIIFVAEDD A  PDRDDD+GVVGLDQAVINSYPKFPFSKDK+M  G NCV
Sbjct: 104 RSDAGIILPQIIFVAEDDGA--PDRDDDNGVVGLDQAVINSYPKFPFSKDKSM-AGANCV 163

Query: 122 CSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 181
           CSICLC+YKEAEMLRMMPECRH+FHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP
Sbjct: 164 CSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 223

Query: 182 LSQYMADRRRR 190
           LSQYMADRRRR
Sbjct: 224 LSQYMADRRRR 229

[Close]

BLAST of MS005844 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.2e-61
Identity = 129/200 (64.50%), Postives = 148/200 (74.00%), Query Frame = 0


Query: 2   SSPSSSNYS-LSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRS 61
           S P + N+S L+ +G GY+IAIAL FLVLLS +LL+ Y+CCR SR      R +A  S  
Sbjct: 20  SPPQAGNHSYLTTLGFGYSIAIALGFLVLLSTVLLSSYICCRDSR-----RRTTAVESTG 79

Query: 62  DAG--IILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKT------MG 121
           D G  +ILP+IIFVAE+D     D +    VVGLDQAVINSYPKF FSKD +       G
Sbjct: 80  DRGGSVILPRIIFVAEED---NEDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFG 139

Query: 122 GGTNCVCSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLP----TP 181
           GG +  CSICLC+YKEAEMLRMMPEC+H+FHLCC+DAWLKLNGSCPVCRNSPLP    TP
Sbjct: 140 GGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTP 199

Query: 182 LSTPLQEVVPLSQYMADRRR 189
           LSTPL EVVPLSQY ADRRR
Sbjct: 200 LSTPLSEVVPLSQYAADRRR 211

[Close]

BLAST of MS005844 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.5e-55
Identity = 119/196 (60.71%), Postives = 140/196 (71.43%), Query Frame = 0


Query: 11  LSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHS--RPSAAPSRSDAGIILPQ 70
           ++ +GLGY+IAIAL FLVL+S ++L+ Y+CCRASR R   S    +A  S SD G+I+P+
Sbjct: 21  ITSLGLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPR 80

Query: 71  IIFVAEDDAAAGPDRDDDSG---VVGLDQAVINSYPKFPFSKDKTM---------GGGTN 130
           IIFVAEDD       D +SG   V GLD +VINSYPKF F+KD T          G G  
Sbjct: 81  IIFVAEDD-------DLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRE 140

Query: 131 CVCSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLP----TPLSTP 189
             CSICLC+Y E EMLRMMPEC+H+FH+ C+DAWLKLNGSCPVCRNSPLP    TP STP
Sbjct: 141 TTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTP 200

[Close]

BLAST of MS005844 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-28
Identity = 67/169 (39.64%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 12  SRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRSDAGIILPQIIF 71
           S +GLGY IAIA++ LVL+S ++LA Y+C R+  + R         + SD  + LP    
Sbjct: 9   SGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGR-------DEATSDVVLDLPSPAA 68

Query: 72  VAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCSICLCDYKEAEM 131
             +               +GLD+ VI SYP+      + +    N  CSICLCDY+  E 
Sbjct: 69  EVK---------------LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREP 128

Query: 132 LRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 181
           +R +PEC H FH  C+D WL+ + +CP+CRNSP P+ L+TPL ++VPL+
Sbjct: 129 VRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of MS005844 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27
Identity = 75/173 (43.35%), Postives = 96/173 (55.49%), Query Frame = 0


Query: 15  GLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRSDAGIILPQIIFVAE 74
           G  Y I +++  L+L++ + L  Y C R     +L S PS   +  D+  I      V  
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTR----NQLSSSPS--QTNQDSTRIHHHHHHVII 122

Query: 75  DDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCSICLCDYKEAEMLRM 134
           D             V GLD+  I SYPK  +S+ K  G  T   C+ICL DYK   +LR 
Sbjct: 123 D------------VVPGLDEDTIQSYPKILYSEAK--GPTTASCCAICLGDYKGKHLLRQ 182

Query: 135 MPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRR 188
           +P+C H FHL CID WL+LN +CPVCR SPLPTPLSTPL EVVPL+  +A  R
Sbjct: 183 LPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATR 215

[Close]

BLAST of MS005844 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-26
Identity = 66/177 (37.29%), Postives = 99/177 (55.93%), Query Frame = 0


Query: 15  GLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRSDAGIILP--QIIFV 74
           GL Y I +++  L+L++ + L  Y C R+  S    + P     + ++   LP  Q  F 
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 75  AEDDAAAGPDRDDDSGVV---GLDQAVINSYPKFPFSKDKT-----MGGGTNCVCSICLC 134
            EDD       + D+ VV   GL + VI  +PK P+ + +          T   CSICL 
Sbjct: 82  FEDD-------ESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLA 141

Query: 135 DYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 182
           DYK+ +M+R++P+C H FH  C+D WL+L+ +CPVCR SPLP+P  TP+ +VVP S+
Sbjct: 142 DYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSR 191

[Close]

BLAST of MS005844 vs. ExPASy TrEMBL
Match: A0A6J1D1V2 (RING-H2 finger protein ATL67-like OS=Momordica charantia OX=3673 GN=LOC111016267 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.0e-102
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0


Query: 1   MSSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRS 60
           MSSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRS
Sbjct: 1   MSSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRS 60

Query: 61  DAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCS 120
           DAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCS
Sbjct: 61  DAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCS 120

Query: 121 ICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 180
           ICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS
Sbjct: 121 ICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 180

Query: 181 QYMADRRRR 190
           QYMADRRRR
Sbjct: 181 QYMADRRRR 189

[Close]

BLAST of MS005844 vs. ExPASy TrEMBL
Match: A0A6J1EYX3 (RING-H2 finger protein ATL67-like OS=Cucurbita moschata OX=3662 GN=LOC111440819 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.3e-85
Identity = 167/191 (87.43%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 2   SSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLH---SRPSAAPS 61
           S+ SSSNYS +++GLGYAIAIALAFLVLLSALLLAFYVCCRASRSR L    SRP   PS
Sbjct: 5   STASSSNYSFAKLGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRP--PPS 64

Query: 62  RSDAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCV 121
           RSDAGIILPQIIFVAEDD A  PDRDDD+GVVGLDQAVINSYPKFPFSKDK+M  G NCV
Sbjct: 65  RSDAGIILPQIIFVAEDDGA--PDRDDDNGVVGLDQAVINSYPKFPFSKDKSM-AGANCV 124

Query: 122 CSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 181
           CSICLC+YKEAEMLRMMPECRH+FHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP
Sbjct: 125 CSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 184

Query: 182 LSQYMADRRRR 190
           LSQYMADRRRR
Sbjct: 185 LSQYMADRRRR 190

[Close]

BLAST of MS005844 vs. ExPASy TrEMBL
Match: A0A6J1IH02 (RING-H2 finger protein ATL67-like OS=Cucurbita maxima OX=3661 GN=LOC111473352 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.7e-85
Identity = 166/191 (86.91%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 2   SSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLH---SRPSAAPS 61
           S+ SSSNYS +++G GYAIAIALAFLVLLSALLLAFYVCCRASRSR L    SRP   PS
Sbjct: 4   STASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRP--PPS 63

Query: 62  RSDAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCV 121
           RSDAGIILPQIIFVAEDD A  PDRDDD+GVVGLDQAVINSYPKFPFSKDK+M  G NCV
Sbjct: 64  RSDAGIILPQIIFVAEDDGA--PDRDDDNGVVGLDQAVINSYPKFPFSKDKSM-AGANCV 123

Query: 122 CSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 181
           CSICLC+YKEAEMLRMMPECRH+FHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP
Sbjct: 124 CSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 183

Query: 182 LSQYMADRRRR 190
           LSQYMADRRRR
Sbjct: 184 LSQYMADRRRR 189

[Close]

BLAST of MS005844 vs. ExPASy TrEMBL
Match: A0A6J1IAW3 (RING-H2 finger protein ATL67-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473352 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 9.7e-85
Identity = 166/191 (86.91%), Postives = 174/191 (91.10%), Query Frame = 0


Query: 2   SSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLH---SRPSAAPS 61
           S+ SSSNYS +++G GYAIAIALAFLVLLSALLLAFYVCCRASRSR L    SRP   PS
Sbjct: 44  STASSSNYSFAKLGFGYAIAIALAFLVLLSALLLAFYVCCRASRSRNLRLSSSRP--PPS 103

Query: 62  RSDAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCV 121
           RSDAGIILPQIIFVAEDD A  PDRDDD+GVVGLDQAVINSYPKFPFSKDK+M  G NCV
Sbjct: 104 RSDAGIILPQIIFVAEDDGA--PDRDDDNGVVGLDQAVINSYPKFPFSKDKSM-AGANCV 163

Query: 122 CSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 181
           CSICLC+YKEAEMLRMMPECRH+FHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP
Sbjct: 164 CSICLCEYKEAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVP 223

Query: 182 LSQYMADRRRR 190
           LSQYMADRRRR
Sbjct: 224 LSQYMADRRRR 229

[Close]

BLAST of MS005844 vs. ExPASy TrEMBL
Match: A0A1S3AVV0 (RING-H2 finger protein ATL67 OS=Cucumis melo OX=3656 GN=LOC103483238 PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 1.3e-84
Identity = 165/189 (87.30%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 1   MSSPSSSNYSLSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRS 60
           MSSPSS+ YS SRIGLGY+IAIALAFLVLLSALLLAFYVCCRASRSR L  RP   PSRS
Sbjct: 1   MSSPSST-YSFSRIGLGYSIAIALAFLVLLSALLLAFYVCCRASRSRHLR-RPPPPPSRS 60

Query: 61  DAGIILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCS 120
           + GIILPQIIFVAEDDAA  PDRDDD+GVVGLDQ+VINSYPKFPFS+DK+M  G NCVCS
Sbjct: 61  ETGIILPQIIFVAEDDAA--PDRDDDNGVVGLDQSVINSYPKFPFSRDKSM-AGANCVCS 120

Query: 121 ICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 180
           ICLC+YK+AEMLRMMPECRH+FHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS
Sbjct: 121 ICLCEYKDAEMLRMMPECRHYFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 180

Query: 181 QYMADRRRR 190
           QYMADRRRR
Sbjct: 181 QYMADRRRR 184

[Close]

BLAST of MS005844 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-62
Identity = 129/200 (64.50%), Postives = 148/200 (74.00%), Query Frame = 0


Query: 2   SSPSSSNYS-LSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRS 61
           S P + N+S L+ +G GY+IAIAL FLVLLS +LL+ Y+CCR SR      R +A  S  
Sbjct: 20  SPPQAGNHSYLTTLGFGYSIAIALGFLVLLSTVLLSSYICCRDSR-----RRTTAVESTG 79

Query: 62  DAG--IILPQIIFVAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKT------MG 121
           D G  +ILP+IIFVAE+D     D +    VVGLDQAVINSYPKF FSKD +       G
Sbjct: 80  DRGGSVILPRIIFVAEED---NEDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFG 139

Query: 122 GGTNCVCSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLP----TP 181
           GG +  CSICLC+YKEAEMLRMMPEC+H+FHLCC+DAWLKLNGSCPVCRNSPLP    TP
Sbjct: 140 GGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTP 199

Query: 182 LSTPLQEVVPLSQYMADRRR 189
           LSTPL EVVPLSQY ADRRR
Sbjct: 200 LSTPLSEVVPLSQYAADRRR 211

[Close]

BLAST of MS005844 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 215.7 bits (548), Expect = 3.2e-56
Identity = 119/196 (60.71%), Postives = 140/196 (71.43%), Query Frame = 0


Query: 11  LSRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHS--RPSAAPSRSDAGIILPQ 70
           ++ +GLGY+IAIAL FLVL+S ++L+ Y+CCRASR R   S    +A  S SD G+I+P+
Sbjct: 21  ITSLGLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPR 80

Query: 71  IIFVAEDDAAAGPDRDDDSG---VVGLDQAVINSYPKFPFSKDKTM---------GGGTN 130
           IIFVAEDD       D +SG   V GLD +VINSYPKF F+KD T          G G  
Sbjct: 81  IIFVAEDD-------DLESGNVVVGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRE 140

Query: 131 CVCSICLCDYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLP----TPLSTP 189
             CSICLC+Y E EMLRMMPEC+H+FH+ C+DAWLKLNGSCPVCRNSPLP    TP STP
Sbjct: 141 TTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTP 200

[Close]

BLAST of MS005844 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 67/169 (39.64%), Postives = 97/169 (57.40%), Query Frame = 0


Query: 12  SRIGLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRSDAGIILPQIIF 71
           S +GLGY IAIA++ LVL+S ++LA Y+C R+  + R         + SD  + LP    
Sbjct: 9   SGVGLGYGIAIAVSILVLISFIMLASYICIRSKSTGR-------DEATSDVVLDLPSPAA 68

Query: 72  VAEDDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCSICLCDYKEAEM 131
             +               +GLD+ VI SYP+      + +    N  CSICLCDY+  E 
Sbjct: 69  EVK---------------LGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREP 128

Query: 132 LRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLS 181
           +R +PEC H FH  C+D WL+ + +CP+CRNSP P+ L+TPL ++VPL+
Sbjct: 129 VRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

[Close]

BLAST of MS005844 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 7.4e-29
Identity = 75/173 (43.35%), Postives = 96/173 (55.49%), Query Frame = 0


Query: 15  GLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRSDAGIILPQIIFVAE 74
           G  Y I +++  L+L++ + L  Y C R     +L S PS   +  D+  I      V  
Sbjct: 63  GFRYGIGVSIGVLLLITTITLTSYYCTR----NQLSSSPS--QTNQDSTRIHHHHHHVII 122

Query: 75  DDAAAGPDRDDDSGVVGLDQAVINSYPKFPFSKDKTMGGGTNCVCSICLCDYKEAEMLRM 134
           D             V GLD+  I SYPK  +S+ K  G  T   C+ICL DYK   +LR 
Sbjct: 123 D------------VVPGLDEDTIQSYPKILYSEAK--GPTTASCCAICLGDYKGKHLLRQ 182

Query: 135 MPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYMADRR 188
           +P+C H FHL CID WL+LN +CPVCR SPLPTPLSTPL EVVPL+  +A  R
Sbjct: 183 LPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATR 215

[Close]

BLAST of MS005844 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-27
Identity = 66/177 (37.29%), Postives = 99/177 (55.93%), Query Frame = 0


Query: 15  GLGYAIAIALAFLVLLSALLLAFYVCCRASRSRRLHSRPSAAPSRSDAGIILP--QIIFV 74
           GL Y I +++  L+L++ + L  Y C R+  S    + P     + ++   LP  Q  F 
Sbjct: 22  GLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQERFD 81

Query: 75  AEDDAAAGPDRDDDSGVV---GLDQAVINSYPKFPFSKDKT-----MGGGTNCVCSICLC 134
            EDD       + D+ VV   GL + VI  +PK P+ + +          T   CSICL 
Sbjct: 82  FEDD-------ESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLA 141

Query: 135 DYKEAEMLRMMPECRHFFHLCCIDAWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQ 182
           DYK+ +M+R++P+C H FH  C+D WL+L+ +CPVCR SPLP+P  TP+ +VVP S+
Sbjct: 142 DYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFSR 191

The following BLAST results are available for this feature:

BLAST of MS005844 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147271.1	2.1e-102	100.00	RING-H2 finger protein ATL67-like [Momordica charantia]	[more]
XP_022933391.1	6.9e-85	87.43	RING-H2 finger protein ATL67-like [Cucurbita moschata]	[more]
KAG6597116.1	1.2e-84	86.91	RING-H2 finger protein ATL68, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022974673.1	2.0e-84	86.91	RING-H2 finger protein ATL67-like isoform X2 [Cucurbita maxima] >XP_022974674.1 ...	[more]
XP_022974672.1	2.0e-84	86.91	RING-H2 finger protein ATL67-like isoform X1 [Cucurbita maxima]	[more]

BLAST of MS005844 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82353	3.2e-61	64.50	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9M313	4.5e-55	60.71	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]
Q9FL42	1.6e-28	39.64	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q8RX29	1.0e-27	43.35	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	2.0e-26	37.29	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]

BLAST of MS005844 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D1V2	1.0e-102	100.00	RING-H2 finger protein ATL67-like OS=Momordica charantia OX=3673 GN=LOC111016267...	[more]
A0A6J1EYX3	3.3e-85	87.43	RING-H2 finger protein ATL67-like OS=Cucurbita moschata OX=3662 GN=LOC111440819 ...	[more]
A0A6J1IH02	9.7e-85	86.91	RING-H2 finger protein ATL67-like OS=Cucurbita maxima OX=3661 GN=LOC111473352 PE...	[more]
A0A6J1IAW3	9.7e-85	86.91	RING-H2 finger protein ATL67-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A1S3AVV0	1.3e-84	87.30	RING-H2 finger protein ATL67 OS=Cucumis melo OX=3656 GN=LOC103483238 PE=4 SV=1	[more]

BLAST of MS005844 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46160.1	2.3e-62	64.50	RING/U-box superfamily protein	[more]
AT3G61550.1	3.2e-56	60.71	RING/U-box superfamily protein	[more]
AT5G07040.1	1.1e-29	39.64	RING/U-box superfamily protein	[more]
AT2G35910.1	7.4e-29	43.35	RING/U-box superfamily protein	[more]
AT5G06490.1	1.4e-27	37.29	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 119..160 e-value: 2.3E-5 score: 33.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 119..161 e-value: 3.9E-10 score: 39.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 119..161 score: 12.076194
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 82..165 e-value: 5.4E-20 score: 72.8
None	No IPR available	PANTHER	PTHR46592:SF6	RING-H2 FINGER PROTEIN ATL67	coord: 5..189
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 97..166
IPR044289	RING-H2 finger protein ATL67/ATL68/ATL70	PANTHER	PTHR46592	RING-H2 FINGER PROTEIN ATL67	coord: 5..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005844.1	MS005844.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0016740	transferase activity