MS005798 (gene) Bitter gourd (TR) v1

Overview
NameMS005798
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUvrABC system protein A
Locationscaffold254: 1648763 .. 1650168 (+)
RNA-Seq ExpressionMS005798
SyntenyMS005798
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAATCCGCGAACAGACAAGCTGCTGAGAAGAACAACTATGGTGGCCACGGTTACTGCTTCATACTTTCTCTTAACCGCCGACTATGGCCCTCAACCCAATTTTCTCGATCCCGTGAGTCCTCTAAACATGTCTCCCTGATAATTTCTGTTATCTGTTTGGTTGCAATGAAAATCCTTGCAAAAACTAGTAGGTTCTTCGATTTTTAGTAGGCTAATTTTTAAGTTGATTGTCTTTTACTTCTTAGCAATCCAGGGATTGTTTTTGTGCAATGTAATTGCGGATTAATGCTATTGCTTGCAGTTACTTTTCTGTGTTTTGTTTTTCCTATGGTGCTATACTTTACTATATTTTGGAATCCTTTATCGAGCAATTGACTAACTTCCTTTTATTAATATTTTTCTCAAGCGAAAGATGAATTGTGTTTGCAGTGACTTCTTTTTCATTGATTAGTGTAGTTCAAGATTTGGGGCTGATTTCCAGTTGTATTTCTTGTCAGTTTTACTTTTAGTTCAGTTTTTTGTAATCAGTGTCTAATTCGTTGTATATTTTCCCTTTTACTTGATTTTATTGTGTAGAACTTAGGTTTTCTACATTCTGTATTGGACCTGTTTCGGCCCGCTTACAAACGGGATTGATTGTTGTTTAATACAGTGTGTTTAGTTTATTATACTTGTATCTATTGTAATTGTAAATCTGTTGAGTCTTTAACTCCTCACTGCATTAAGTATAATTAGCTGAAAAATATTCGAATACGCTTTAAATTGCTCAGGAAGAATATTTATGTTCACTGATCTCTAATGAGAGCAATCTGTAGTTTGTGGGTTCATATTCACTTTGGCGAATTACTATTTTTTGTTCTTGTTTTCAATTTTAGAGTCATAACTTTCGATGAAGTTCCGGTCTGGCTAGATTCGTCTATCACCCATAATCTCTTGCTATTGCTATAAGATATGAGAACTAAGAATGAAGAGTGAAGTTACCCTTTCTATTCAGTTAGAAGCAAGAATTCGTAGCATTTAGCAAATTAATAGTGTAAGTTTAAGTGACAAGTTAACATGATTTTACTTCTAAAGTAAAATCAAACAACTGTAAAGCATTGGACGTTCCCATTACTTCCTACATTGGAAACTTTGATGCTGCCGTGAATCTGTATGCATAAAATAATATTCATTTAGTGATCTGCCGGATTTTATATGCTTGATTGGTGTTTGATCGAATTTCCAGCTTTATAGAAACGTACATATTGTTTTGGATTCTAATGGCATAATTTGGGATGGCAGATCAAAAAGTTTATACTGTCAGCAGAAAGTTCTGTTAAGGGTTTCATCTTTGGATCAAATAATCAATCTCAAGAAAGTCAAAGAGAGAAGCTGGGCTCCAATGGTGTCAAGGACCAACCG

mRNA sequence

ATGGTGAATCCGCGAACAGACAAGCTGCTGAGAAGAACAACTATGGTGGCCACGGTTACTGCTTCATACTTTCTCTTAACCGCCGACTATGGCCCTCAACCCAATTTTCTCGATCCCATCAAAAAGTTTATACTGTCAGCAGAAAGTTCTGTTAAGGGTTTCATCTTTGGATCAAATAATCAATCTCAAGAAAGTCAAAGAGAGAAGCTGGGCTCCAATGGTGTCAAGGACCAACCG

Coding sequence (CDS)

ATGGTGAATCCGCGAACAGACAAGCTGCTGAGAAGAACAACTATGGTGGCCACGGTTACTGCTTCATACTTTCTCTTAACCGCCGACTATGGCCCTCAACCCAATTTTCTCGATCCCATCAAAAAGTTTATACTGTCAGCAGAAAGTTCTGTTAAGGGTTTCATCTTTGGATCAAATAATCAATCTCAAGAAAGTCAAAGAGAGAAGCTGGGCTCCAATGGTGTCAAGGACCAACCG

Protein sequence

MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNNQSQESQREKLGSNGVKDQP
Homology
[Close]
BLAST of MS005798 vs. NCBI nr
Match: XP_022147242.1 (uncharacterized protein LOC111016239 [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 3.9e-34
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPI+KFILSAESSVKGFIFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIQKFILSAESSVKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGVKDQP 80
          QSQESQREKLGSNGVKDQP
Sbjct: 61 QSQESQREKLGSNGVKDQP 79

[Close]
BLAST of MS005798 vs. NCBI nr
Match: XP_022924545.1 (uncharacterized protein LOC111431996 [Cucurbita moschata] >XP_022980455.1 uncharacterized protein LOC111479819 [Cucurbita maxima] >XP_023529151.1 uncharacterized protein LOC111791881 [Cucurbita pepo subsp. pepo] >KAG6582608.1 hypothetical protein SDJN03_22610, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018999.1 hypothetical protein SDJN02_20876 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 6.3e-32
Identity = 74/79 (93.67%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILS ESS+KGFIFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGVKDQP 80
          QSQ SQ EKLGSNGVKD P
Sbjct: 61 QSQGSQSEKLGSNGVKDNP 79

[Close]
BLAST of MS005798 vs. NCBI nr
Match: XP_008438057.1 (PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 5.3e-31
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILSAESS+KGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGVKD 78
          QSQE QREKLGSNGVKD
Sbjct: 61 QSQEGQREKLGSNGVKD 77

[Close]
BLAST of MS005798 vs. NCBI nr
Match: XP_011650756.1 (uncharacterized protein LOC105434815 [Cucumis sativus] >KGN56522.1 hypothetical protein Csa_010552 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 6.9e-31
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILSAESS+KGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGVKD 78
          QSQE QREKLGSNGVKD
Sbjct: 61 QSQEGQREKLGSNGVKD 77

[Close]
BLAST of MS005798 vs. NCBI nr
Match: XP_038906565.1 (uncharacterized protein LOC120092525 [Benincasa hispida] >XP_038906569.1 uncharacterized protein LOC120092525 [Benincasa hispida] >XP_038906579.1 uncharacterized protein LOC120092525 [Benincasa hispida])

HSP 1 Score: 143.3 bits (360), Expect = 9.1e-31
Identity = 73/79 (92.41%), Postives = 74/79 (93.67%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESS+KGFIFGSN 
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSMKGFIFGSNK 60

Query: 61 QSQESQREKLGSNGVKDQP 80
           SQESQ EKLGSNGVKD P
Sbjct: 61 HSQESQTEKLGSNGVKDNP 79

[Close]
BLAST of MS005798 vs. ExPASy TrEMBL
Match: A0A6J1D1U5 (uncharacterized protein LOC111016239 OS=Momordica charantia OX=3673 GN=LOC111016239 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.9e-34
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPI+KFILSAESSVKGFIFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIQKFILSAESSVKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGVKDQP 80
          QSQESQREKLGSNGVKDQP
Sbjct: 61 QSQESQREKLGSNGVKDQP 79

[Close]
BLAST of MS005798 vs. ExPASy TrEMBL
Match: A0A6J1IWD0 (uncharacterized protein LOC111479819 OS=Cucurbita maxima OX=3661 GN=LOC111479819 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 74/79 (93.67%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILS ESS+KGFIFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGVKDQP 80
          QSQ SQ EKLGSNGVKD P
Sbjct: 61 QSQGSQSEKLGSNGVKDNP 79

[Close]
BLAST of MS005798 vs. ExPASy TrEMBL
Match: A0A6J1EFB9 (uncharacterized protein LOC111431996 OS=Cucurbita moschata OX=3662 GN=LOC111431996 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 74/79 (93.67%), Postives = 75/79 (94.94%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNN 60
          MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILS ESS+KGFIFGSNN
Sbjct: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSTESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGVKDQP 80
          QSQ SQ EKLGSNGVKD P
Sbjct: 61 QSQGSQSEKLGSNGVKDNP 79

[Close]
BLAST of MS005798 vs. ExPASy TrEMBL
Match: A0A1S3AW35 (uncharacterized protein LOC103483279 OS=Cucumis melo OX=3656 GN=LOC103483279 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.6e-31
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILSAESS+KGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKIILSAESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGVKD 78
          QSQE QREKLGSNGVKD
Sbjct: 61 QSQEGQREKLGSNGVKD 77

[Close]
BLAST of MS005798 vs. ExPASy TrEMBL
Match: A0A0A0L7H0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122460 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.4e-31
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0 

Query: 1  MVNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNN 60
          MVN RTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDP+KK ILSAESS+KGFIFGSNN
Sbjct: 1  MVNQRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPVKKVILSAESSIKGFIFGSNN 60

Query: 61 QSQESQREKLGSNGVKD 78
          QSQE QREKLGSNGVKD
Sbjct: 61 QSQEGQREKLGSNGVKD 77

[Close]
BLAST of MS005798 vs. TAIR 10
Match: AT4G00530.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01725.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 2.5e-18
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNNQ 61
          +NP+TDK++RRTTMVAT  ASYFLLT DYGP+PN LDPIK+ IL+A+ SVK FIFG   +
Sbjct: 1  MNPQTDKVVRRTTMVATAVASYFLLTGDYGPEPNVLDPIKRKILAAQDSVKQFIFGPKGE 60

[Close]
BLAST of MS005798 vs. TAIR 10
Match: AT1G01725.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00530.1); Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 3.7e-14
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 2  VNPRTDKLLRRTTMVATVTASYFLLTADYGPQPNFLDPIKKFILSAESSVKGFIFGSNNQ 61
          +NP+ +K+++ T++VAT   SYFLLTADYGP+PN LDPI++ ILSA+ SVK FIF S   
Sbjct: 1  MNPQIEKVVKVTSVVATAVVSYFLLTADYGPEPNALDPIRQRILSAQDSVKEFIFPSKKS 60

Query: 62 SQ 64
           +
Sbjct: 61 DK 62

The following BLAST results are available for this feature:
BLAST of MS005798 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022147242.13.9e-3498.73uncharacterized protein LOC111016239 [Momordica charantia][more]
XP_022924545.16.3e-3293.67uncharacterized protein LOC111431996 [Cucurbita moschata] >XP_022980455.1 unchar... [more]
XP_008438057.15.3e-3193.51PREDICTED: uncharacterized protein LOC103483279 [Cucumis melo][more]
XP_011650756.16.9e-3193.51uncharacterized protein LOC105434815 [Cucumis sativus] >KGN56522.1 hypothetical ... [more]
XP_038906565.19.1e-3192.41uncharacterized protein LOC120092525 [Benincasa hispida] >XP_038906569.1 unchara... [more]
BLAST of MS005798 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS005798 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D1U51.9e-3498.73uncharacterized protein LOC111016239 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A6J1IWD03.0e-3293.67uncharacterized protein LOC111479819 OS=Cucurbita maxima OX=3661 GN=LOC111479819... [more]
A0A6J1EFB93.0e-3293.67uncharacterized protein LOC111431996 OS=Cucurbita moschata OX=3662 GN=LOC1114319... [more]
A0A1S3AW352.6e-3193.51uncharacterized protein LOC103483279 OS=Cucumis melo OX=3656 GN=LOC103483279 PE=... [more]
A0A0A0L7H03.4e-3193.51Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122460 PE=4 SV=1[more]
BLAST of MS005798 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G00530.12.5e-1868.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G01725.13.7e-1456.45unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..79
NoneNo IPR availablePANTHERPTHR37696ADENYLOSUCCINATE SYNTHETASE-RELATEDcoord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005798.1MS005798.1mRNA