MS005781 (gene) Bitter gourd (TR) v1

Overview
NameMS005781
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionrRNA adenine N(6)-methyltransferase
Locationscaffold254: 1543093 .. 1543200 (+)
RNA-Seq ExpressionMS005781
SyntenyMS005781
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTTCTAAATGAGGACTTTGTTAAATGCCATGTGAGTTCACATATGCTGTCATTGCTCAAAAGTATTGAGTTGTCAGATTCAAAATCACAACCTGAAAAAATA

mRNA sequence

ATGCAGGTTCTAAATGAGGACTTTGTTAAATGCCATGTGAGTTCACATATGCTGTCATTGCTCAAAAGTATTGAGTTGTCAGATTCAAAATCACAACCTGAAAAAATA

Coding sequence (CDS)

ATGCAGGTTCTAAATGAGGACTTTGTTAAATGCCATGTGAGTTCACATATGCTGTCATTGCTCAAAAGTATTGAGTTGTCAGATTCAAAATCACAACCTGAAAAAATA

Protein sequence

MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI
Homology
BLAST of MS005781 vs. NCBI nr
Match: XP_038878140.1 (ribosomal RNA small subunit methyltransferase, chloroplastic [Benincasa hispida])

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-07
Identity = 30/36 (83.33%), Postives = 35/36 (97.22%), Query Frame = 0

Query: 1   MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           ++VLNEDFVKCHVSSHM+SLLKSIELSDS+SQP K+
Sbjct: 151 LKVLNEDFVKCHVSSHMMSLLKSIELSDSRSQPAKV 186

BLAST of MS005781 vs. NCBI nr
Match: XP_022147256.1 (ribosomal RNA small subunit methyltransferase, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 1   MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           ++VLNEDFVKCHVSSHM+SLLK +ELSDSKSQP K+
Sbjct: 99  LKVLNEDFVKCHVSSHMMSLLKGMELSDSKSQPAKV 134

BLAST of MS005781 vs. NCBI nr
Match: XP_022147255.1 (ribosomal RNA small subunit methyltransferase, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-07
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 1   MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           ++VLNEDFVKCHVSSHM+SLLK +ELSDSKSQP K+
Sbjct: 149 LKVLNEDFVKCHVSSHMMSLLKGMELSDSKSQPAKV 184

BLAST of MS005781 vs. NCBI nr
Match: XP_022942262.1 (ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita moschata])

HSP 1 Score: 62.8 bits (151), Expect = 7.1e-07
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 1   MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           ++VLNEDF KCHVSSHM SLLKSIELSDSKSQP K+
Sbjct: 149 LKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAKV 184

BLAST of MS005781 vs. NCBI nr
Match: KAG6597173.1 (Ribosomal RNA small subunit methyltransferase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 7.1e-07
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 1   MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           ++VLNEDF KCHVSSHM SLLKSIELSDSKSQP K+
Sbjct: 149 LKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAKV 184

BLAST of MS005781 vs. ExPASy TrEMBL
Match: A0A6J1D1T5 (rRNA adenine N(6)-methyltransferase OS=Momordica charantia OX=3673 GN=LOC111016252 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 1   MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           ++VLNEDFVKCHVSSHM+SLLK +ELSDSKSQP K+
Sbjct: 99  LKVLNEDFVKCHVSSHMMSLLKGMELSDSKSQPAKV 134

BLAST of MS005781 vs. ExPASy TrEMBL
Match: A0A6J1CZM8 (rRNA adenine N(6)-methyltransferase OS=Momordica charantia OX=3673 GN=LOC111016252 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.6e-07
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 1   MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           ++VLNEDFVKCHVSSHM+SLLK +ELSDSKSQP K+
Sbjct: 149 LKVLNEDFVKCHVSSHMMSLLKGMELSDSKSQPAKV 184

BLAST of MS005781 vs. ExPASy TrEMBL
Match: A0A6J1FPR1 (rRNA adenine N(6)-methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111447340 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 1   MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           ++VLNEDF KCHVSSHM SLLKSIELSDSKSQP K+
Sbjct: 149 LKVLNEDFTKCHVSSHMSSLLKSIELSDSKSQPAKV 184

BLAST of MS005781 vs. ExPASy TrEMBL
Match: A0A6J1IAM1 (rRNA adenine N(6)-methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111472756 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-07
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 0

Query: 1   MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           ++VLNEDF KCH+SSHM SLLKSIELSDSKSQP K+
Sbjct: 149 LKVLNEDFTKCHMSSHMSSLLKSIELSDSKSQPAKV 184

BLAST of MS005781 vs. ExPASy TrEMBL
Match: A0A5A7U5Y1 (rRNA adenine N(6)-methyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004330 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-06
Identity = 27/36 (75.00%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 1   MQVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           ++VLNEDFVKCHVSSHM+S LKSIELS+++SQP K+
Sbjct: 149 LKVLNEDFVKCHVSSHMMSFLKSIELSEARSQPAKV 184

BLAST of MS005781 vs. TAIR 10
Match: AT1G01860.1 (Ribosomal RNA adenine dimethylase family protein )

HSP 1 Score: 40.0 bits (92), Expect = 4.6e-04
Identity = 19/35 (54.29%), Postives = 25/35 (71.43%), Query Frame = 0

Query: 2   QVLNEDFVKCHVSSHMLSLLKSIELSDSKSQPEKI 37
           +VL EDFVKCH+ SHMLS+L++  LS   S   K+
Sbjct: 146 KVLQEDFVKCHIRSHMLSILETRRLSHPDSALAKV 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038878140.11.9e-0783.33ribosomal RNA small subunit methyltransferase, chloroplastic [Benincasa hispida][more]
XP_022147256.15.4e-0780.56ribosomal RNA small subunit methyltransferase, chloroplastic isoform X2 [Momordi... [more]
XP_022147255.15.4e-0780.56ribosomal RNA small subunit methyltransferase, chloroplastic isoform X1 [Momordi... [more]
XP_022942262.17.1e-0783.33ribosomal RNA small subunit methyltransferase, chloroplastic [Cucurbita moschata... [more]
KAG6597173.17.1e-0783.33Ribosomal RNA small subunit methyltransferase, chloroplastic, partial [Cucurbita... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D1T52.6e-0780.56rRNA adenine N(6)-methyltransferase OS=Momordica charantia OX=3673 GN=LOC1110162... [more]
A0A6J1CZM82.6e-0780.56rRNA adenine N(6)-methyltransferase OS=Momordica charantia OX=3673 GN=LOC1110162... [more]
A0A6J1FPR13.4e-0783.33rRNA adenine N(6)-methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC11144734... [more]
A0A6J1IAM17.7e-0780.56rRNA adenine N(6)-methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111472756 ... [more]
A0A5A7U5Y11.7e-0675.00rRNA adenine N(6)-methyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
Match NameE-valueIdentityDescription
AT1G01860.14.6e-0454.29Ribosomal RNA adenine dimethylase family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005781.1MS005781.1mRNA