MS005742 (gene) Bitter gourd (TR) v1

Overview


Name	MS005742
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold254: 1264868 .. 1265334 (-)
RNA-Seq Expression	MS005742
Synteny	MS005742

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTGAGTATACCTCTTATAGCTATCGTTAGAATTGGAGCGTGGAAATTGGAGAGCATACTCCCGCATGCACGAGCCGTAGCCTTTAACAGTGGTCATCTGGAACTCCAACCGGGAACAAAAATTTCACTGATGATTGCGTTTCTTCCCGAACCAAGCCGGCAAGGAAAACCGCAGAGGAAGAGAGGTGGAAGAGCGCTGAAGTTTACAGAGTGATGACGGAAATGATTGTGGTTGCTGCGGTGGTCGAGATAGTTCCGGTGAAAGAATGTCGGAGGGAGCAGCCGGAGAAGACCATGTGGTTGACTTTGGACGCAGAAATGCTTGATTGGAGCAATGGAAGAGAGAAGGCCTTGAAGGGAGGATTTAATGGAGTTAAGTCGAAATGGCTGATCATGGCTAGGGCTAGGGTTTGGGCGGAGGAACTGGATGGGCTTATGATTTTGGAAAAAATTTGGGCTACCACT

mRNA sequence

GTGTTGAGTATACCTCTTATAGCTATCGTTAGAATTGGAGCGTGGAAATTGGAGAGCATACTCCCGCATGCACGAGCCGTAGCCTTTAACAGTGGTCATCTGGAACTCACCGGGAACAAAAATTTCACTGATGATTGCGTTTCTTCCCGAACCAAGCCGGCAAGGAAAACCGCAGAGGAAGAGAGGTGGAAGAGCGCTGAACAGAGTGATGACGGAAATGATTGTGGTTGCTGCGGTGGTCGAGATAGTTCCGGTGAAAGAATGTCGGAGGGAGCAGCCGGAGAAGACCATGTGGTTGACTTTGGACGCAGAAATGCTGATTGGAGCAATGGAAGAGAGAAGGCCTTGAAGGGAGGATTTAATGGAGTTAAGTCGAAATGGCTGATCATGGCTAGGGCTAGGGTTTGGGCGGAGGAACTGGATGGGCTTATGATTTTGGAAAAAATTTGGGCTACCACT

Coding sequence (CDS)

GTGTTGAGTATACCTCTTATAGCTATCGTTAGAATTGGAGCGTGGAAATTGGAGAGCATACTCCCGCATGCACGAGCCGTAGCCTTTAACAGTGGTCATCTGGAACTCACCGGGAACAAAAATTTCACTGATGATTGCGTTTCTTCCCGAACCAAGCCGGCAAGGAAAACCGCAGAGGAAGAGAGGTGGAAGAGCGCTGAACAGAGTGATGACGGAAATGATTGTGGTTGCTGCGGTGGTCGAGATAGTTCCGGTGAAAGAATGTCGGAGGGAGCAGCCGGAGAAGACCATGTGGTTGACTTTGGACGCAGAAATGCTGATTGGAGCAATGGAAGAGAGAAGGCCTTGAAGGGAGGATTTAATGGAGTTAAGTCGAAATGGCTGATCATGGCTAGGGCTAGGGTTTGGGCGGAGGAACTGGATGGGCTTATGATTTTGGAAAAAATTTGGGCTACCACT

Protein sequence

VLSIPLIAIVRIGAWKLESILPHARAVAFNSGHLELTGNKNFTDDCVSSRTKPARKTAEEERWKSAEQSDDGNDCGCCGGRDSSGERMSEGAAGEDHVVDFGRRNADWSNGREKALKGGFNGVKSKWLIMARARVWAEELDGLMILEKIWATT

Homology

[Close]

BLAST of MS005742 vs. ExPASy TrEMBL
Match: A0A0A0L7L5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125540 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.2e-20
Identity = 81/163 (49.69%), Postives = 98/163 (60.12%), Query Frame = 0


Query: 10  VRIGAWKLESILPHARAVAFNSGHLE-LTGNKNFTDDCVSSRTK---------PARKTAE 69
           V  G  KL+S+ P ARA+A N+GHLE LT NK FTD+  SSRTK          A+KT  
Sbjct: 8   VATGTRKLKSMFPQARAIALNTGHLEQLTENKTFTDNQASSRTKQLPDSIPDEKAKKTPR 67

Query: 70  EERWKSAE-QSDDGNDCGCCG----GRDSSGERMSEGAAGEDHVVDFGRRNA-DWSNGRE 129
           + R  + + ++DDG+ C C G    GR SSG+   +GA GE HV+DF  RNA DWS GR 
Sbjct: 68  KMRGSALKSENDDGDSCDCSGSHDSGRSSSGDGAWKGAGGEVHVIDFEWRNAFDWSRGRA 127

Query: 130 -KALKGG---FNGVKSKWLIMARARVWAEELDGLMILEKI-WA 152
            KALK G      V  K   MARARVW   LDGL+IL K+ WA
Sbjct: 128 MKALKFGGRILMEVSRKGWSMARARVW-NLLDGLLILGKVKWA 169

The following BLAST results are available for this feature:

BLAST of MS005742 vs.


Match Name	E-value	Identity	Description

BLAST of MS005742 vs.


Match Name	E-value	Identity	Description

BLAST of MS005742 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7L5	5.2e-20	49.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125540 PE=4 SV=1	[more]

BLAST of MS005742 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005742.1	MS005742.1	mRNA