MS005702 (gene) Bitter gourd (TR) v1

Overview


Name	MS005702
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cyclin
Location	scaffold254: 934965 .. 936276 (-)
RNA-Seq Expression	MS005702
Synteny	MS005702

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAACTCGAGGACCCAACTGTCATGCCGAAGCTGATCGATTTCCTCTCTTGTCTCCTCCAACGAGTGGCCGAATCCAACGATCGGAACCTCTCAGTTCAATTTCAATCCCACAAAATCTCCGCCTTCCATGGCTTAACTCGCCCCACCATTTCTATCCAAAGCTACTTAGACAGAATCTTCAAGTACGCCAATTGCAGCCCCTGTTGCTTCGTAATTGCTTACGTTTATCTCGATCGATTTGTCCAGAGGCAGCCCTCTCTGCCCATCAATTCCTTCAATGTTCATCGATTGCTCATCACCAGCGTGCTTGTTGCTGCCAAATTTATGGATGATACGTGAGTTTCTACTCTGTTTAAAAGGGATTTTTCGGTGCTGGATTTGGTTTTTTTTCGTTTGCCTGCCAAGTTACTGATAAAATGCCTCAATGGGTTCTGCTTTTTAATGTGAGATGGGTTTTGAGAGAACGTTTTGGATTTGCAGATTGTGGTTATTATTTTTTTTTCTGGGCATGATTTGAAGAAAACTTGATGTCTTCAAAGATGATTTTCTCTCTGTTTTCAAAGATCTCTTTGATGTGGTTTTATAGTGATGAATCTCATGCTTTGAGGAACTTCTTGTTTTGTTTTTTTGGGGTTTTGATTTTGCTTGTAAATGGAAGAAAAGATATTTCCAGAGATTCTTTTCTCTCCATTTTCAAGGATCCTCTTGATGGGATTTAATATTTTGATGAATCTGATGCTTTGAGCAACTTCTTCTTTGTCTTGATCTCTTTCTTTTGTTGGTTTTCTGGGAATCTTCTTCTCTACTTGCTGAATATGTCCTCTCTCTCTCTCTCTCTCTCTCACTATCATTTTCAACAGCTAAGGCAGCCAGCTGAAAATAATTGCGAACCATACAAACTTTACATAATACAAAAAGGCTGCAGAATTTTCCTCCAATGATCATCATTTTTCCCCCAAAAAAATCAAAAGGGCTTTGATTATGTGCAATTTGAGTTGAAGGTTGTTGGAATTTTTTGCTTTCTTTCAGGTACTACAACAATGCATATTATGCAAAAGTGGGAGGAATCAGCACAGCAGAAATCAACTTTCTAGAAGTGGATTTTCTGTTTGGTTTAGGCTTCCATTTGAATGTCACACCCACCACCTTCCATTCTTATTACTCATACCTCCAAACACAAATGCTTCAGCTGCAGCTGCAGCCTCCTCTCATGAGTAGTTCTTCTGCAAAATCAGACCTGCTGAAATCCCACTTCTGTTTTGATGAAGATGAATCTTCCAATAACAAGCAACAACTTGCAGCTGTT

mRNA sequence

ATGGCGGAACTCGAGGACCCAACTGTCATGCCGAAGCTGATCGATTTCCTCTCTTGTCTCCTCCAACGAGTGGCCGAATCCAACGATCGGAACCTCTCAGTTCAATTTCAATCCCACAAAATCTCCGCCTTCCATGGCTTAACTCGCCCCACCATTTCTATCCAAAGCTACTTAGACAGAATCTTCAAGTACGCCAATTGCAGCCCCTGTTGCTTCGTAATTGCTTACGTTTATCTCGATCGATTTGTCCAGAGGCAGCCCTCTCTGCCCATCAATTCCTTCAATGTTCATCGATTGCTCATCACCAGCGTGCTTGTTGCTGCCAAATTTATGGATGATACGTACTACAACAATGCATATTATGCAAAAGTGGGAGGAATCAGCACAGCAGAAATCAACTTTCTAGAAGTGGATTTTCTGTTTGGTTTAGGCTTCCATTTGAATGTCACACCCACCACCTTCCATTCTTATTACTCATACCTCCAAACACAAATGCTTCAGCTGCAGCTGCAGCCTCCTCTCATGAGTAGTTCTTCTGCAAAATCAGACCTGCTGAAATCCCACTTCTGTTTTGATGAAGATGAATCTTCCAATAACAAGCAACAACTTGCAGCTGTT

Coding sequence (CDS)

ATGGCGGAACTCGAGGACCCAACTGTCATGCCGAAGCTGATCGATTTCCTCTCTTGTCTCCTCCAACGAGTGGCCGAATCCAACGATCGGAACCTCTCAGTTCAATTTCAATCCCACAAAATCTCCGCCTTCCATGGCTTAACTCGCCCCACCATTTCTATCCAAAGCTACTTAGACAGAATCTTCAAGTACGCCAATTGCAGCCCCTGTTGCTTCGTAATTGCTTACGTTTATCTCGATCGATTTGTCCAGAGGCAGCCCTCTCTGCCCATCAATTCCTTCAATGTTCATCGATTGCTCATCACCAGCGTGCTTGTTGCTGCCAAATTTATGGATGATACGTACTACAACAATGCATATTATGCAAAAGTGGGAGGAATCAGCACAGCAGAAATCAACTTTCTAGAAGTGGATTTTCTGTTTGGTTTAGGCTTCCATTTGAATGTCACACCCACCACCTTCCATTCTTATTACTCATACCTCCAAACACAAATGCTTCAGCTGCAGCTGCAGCCTCCTCTCATGAGTAGTTCTTCTGCAAAATCAGACCTGCTGAAATCCCACTTCTGTTTTGATGAAGATGAATCTTCCAATAACAAGCAACAACTTGCAGCTGTT

Protein sequence

MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDRIFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAYYAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSAKSDLLKSHFCFDEDESSNNKQQLAAV

Homology

[Close]

BLAST of MS005702 vs. NCBI nr
Match: XP_022146902.1 (cyclin-U4-1 [Momordica charantia])

HSP 1 Score: 410.2 bits (1053), Expect = 1.0e-110
Identity = 205/206 (99.51%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR
Sbjct: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY
Sbjct: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA
Sbjct: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180

Query: 181 KSDLLKSHFCFDEDESSNNKQQLAAV 207
           KS+LLKSHFCFDEDESSNNKQQLAAV
Sbjct: 181 KSELLKSHFCFDEDESSNNKQQLAAV 206

[Close]

BLAST of MS005702 vs. NCBI nr
Match: XP_008438223.1 (PREDICTED: cyclin-U4-1 [Cucumis melo] >KAA0049071.1 cyclin-U4-1 [Cucumis melo var. makuwa] >TYK17491.1 cyclin-U4-1 [Cucumis melo var. makuwa])

HSP 1 Score: 365.2 bits (936), Expect = 3.8e-97
Identity = 186/213 (87.32%), Postives = 195/213 (91.55%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELEDPTVM KLIDFLSCLLQRVAESNDRNLSV  Q HKIS+FHGLTRP+ISIQSYLDR
Sbjct: 1   MAELEDPTVMAKLIDFLSCLLQRVAESNDRNLSVHLQPHKISSFHGLTRPSISIQSYLDR 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLV+AKFMDDTYYNNAY
Sbjct: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVSAKFMDDTYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGIST E+NFLEVDFLFGLGFHLNVTPTTFHSYYSYLQ QM  L LQPPLMS++S 
Sbjct: 121 YAKVGGISTTEMNFLEVDFLFGLGFHLNVTPTTFHSYYSYLQRQM--LLLQPPLMSTAST 180

Query: 181 KSDL-------LKSHFCFDEDESSNNKQQLAAV 207
           KS+L       LKSHFCFDEDE+S+ KQQLAAV
Sbjct: 181 KSELLLSSSRALKSHFCFDEDEASHKKQQLAAV 211

[Close]

BLAST of MS005702 vs. NCBI nr
Match: XP_004133942.1 (cyclin-U4-1 [Cucumis sativus] >KGN56640.1 hypothetical protein Csa_011200 [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 1.1e-96
Identity = 187/213 (87.79%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELED TVM KLIDFLSCLLQRVAESNDRNLSV  Q HKISAFHGLTRP+ISIQSYLDR
Sbjct: 1   MAELEDSTVMAKLIDFLSCLLQRVAESNDRNLSVNLQPHKISAFHGLTRPSISIQSYLDR 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLV+AKFMDDTYYNNAY
Sbjct: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVSAKFMDDTYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGIST E+NFLEVDFLFGLGFHLNVTPTTFHSYYSYLQ QM  L LQPPL SS+S 
Sbjct: 121 YAKVGGISTTEMNFLEVDFLFGLGFHLNVTPTTFHSYYSYLQRQM--LLLQPPLTSSAST 180

Query: 181 KSDL-------LKSHFCFDEDESSNNKQQLAAV 207
           KSDL       LKSHFCFDEDE+S+ KQQLAAV
Sbjct: 181 KSDLLLTSSRALKSHFCFDEDEASHKKQQLAAV 211

[Close]

BLAST of MS005702 vs. NCBI nr
Match: XP_038880049.1 (cyclin-U4-1 [Benincasa hispida])

HSP 1 Score: 361.3 bits (926), Expect = 5.5e-96
Identity = 185/212 (87.26%), Postives = 194/212 (91.51%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELEDPTVM KLIDFLSCLLQRVAESND+NLSV  Q HKISAFHGLTRPTISIQSYL+R
Sbjct: 1   MAELEDPTVMAKLIDFLSCLLQRVAESNDQNLSVHLQPHKISAFHGLTRPTISIQSYLER 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSP CFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLV+AKFMDDTYYNNAY
Sbjct: 61  IFKYANCSPSCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVSAKFMDDTYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGIST E+NFLEVDFLFGLGFHLNVTPTTFHSYYSYLQ QM  L LQPPLMS++S 
Sbjct: 121 YAKVGGISTTEMNFLEVDFLFGLGFHLNVTPTTFHSYYSYLQRQM--LLLQPPLMSAAST 180

Query: 181 KSDL------LKSHFCFDEDESSNNKQQLAAV 207
           KS+L      LKSHFCFDEDE+S+ KQQLAAV
Sbjct: 181 KSELRSSSRALKSHFCFDEDEASHKKQQLAAV 210

[Close]

BLAST of MS005702 vs. NCBI nr
Match: XP_022974161.1 (cyclin-U4-1-like [Cucurbita maxima])

HSP 1 Score: 360.1 bits (923), Expect = 1.2e-95
Identity = 185/212 (87.26%), Postives = 194/212 (91.51%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELEDPTVMPKLI+FLSCLLQRVAESND+NLSV  Q HKISAFHGLTRP ISIQSYLDR
Sbjct: 1   MAELEDPTVMPKLINFLSCLLQRVAESNDQNLSVHLQHHKISAFHGLTRPAISIQSYLDR 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSPCCFV+AY+YLDRFVQRQPSLPINSFNVHRLLITSVLV+AKFMDDTYYNNAY
Sbjct: 61  IFKYANCSPCCFVVAYIYLDRFVQRQPSLPINSFNVHRLLITSVLVSAKFMDDTYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGISTAEINFLEVDFLFGLGFHLNVTP TFHSYYSYLQ QM  L LQPPL SS+SA
Sbjct: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPNTFHSYYSYLQRQM--LLLQPPL-SSTSA 180

Query: 181 KSDL------LKSHFCFDEDESSNNKQQLAAV 207
           KS+L      LK HFCFDEDE+S+ KQQLAAV
Sbjct: 181 KSELILTARALKPHFCFDEDEASHKKQQLAAV 209

[Close]

BLAST of MS005702 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 8.9e-73
Identity = 141/202 (69.80%), Postives = 165/202 (81.68%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELE+P+VM KLI FLS LL+RVAESND    V  QS ++S FHGL+RPTI+IQSYL+R
Sbjct: 1   MAELENPSVMSKLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLER 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSP CFV+AYVYLDRF  RQPSLPINSFNVHRLLITSV+VAAKF+DD YYNNAY
Sbjct: 61  IFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGIST E+NFLE+DFLFGLGF LNVTP TF++Y+SYLQ +M  LQ    ++  SS 
Sbjct: 121 YAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQPLSLVVVPSS- 180

Query: 181 KSDLLKSHFCFDEDESSNNKQQ 203
                +S   F++DE+S+ KQQ
Sbjct: 181 -----RSLITFNDDEASHQKQQ 196

[Close]

BLAST of MS005702 vs. ExPASy Swiss-Prot
Match: Q9LY16 (Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-54
Identity = 113/203 (55.67%), Postives = 154/203 (75.86%), Query Frame = 0


Query: 9   VMPKLIDFLSCLLQRVAESNDRNLSVQFQSHK-ISAFHGLTRPTISIQSYLDRIFKYANC 68
           +MP +I  +S LLQRV+E+ND +LS  F+ HK ISAF+ +T+P+ISI+SY++RIFKYA+C
Sbjct: 19  IMPNVITAMSSLLQRVSETND-DLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADC 78

Query: 69  SPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAYYAKVGGI 128
           S  C+++AY+YLDRF+Q+QP LPI+S NVHRL+ITSVLV+AKFMDD  YNNA+YAKVGGI
Sbjct: 79  SDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGI 138

Query: 129 STAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSS----SAKSD 188
           +T E+N LE+DFLFG+GF LNVT +T++ Y S LQ +M+   +  PL+  +    S   +
Sbjct: 139 TTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRTMYSPLLEPAFLVRSFHKN 198

Query: 189 LLKSHFCFDEDESSNNKQQLAAV 207
           LLK+ +    DE   N Q  +AV
Sbjct: 199 LLKNLY----DEDHRNSQVTSAV 216

[Close]

BLAST of MS005702 vs. ExPASy Swiss-Prot
Match: Q9FKF6 (Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-54
Identity = 119/213 (55.87%), Postives = 157/213 (73.71%), Query Frame = 0


Query: 3   ELEDP--TVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 62
           +L++P   +MP ++  +S LLQRV+E+ND NLS   Q  K S+F G+T+P+ISI+SYL+R
Sbjct: 13  DLQEPLAEIMPSVLTAMSYLLQRVSETND-NLS---QKQKPSSFTGVTKPSISIRSYLER 72

Query: 63  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 122
           IF+YANCS  C+++AY+YLDRFV++QP LPINSFNVHRL+ITSVLV+AKFMDD  YNN Y
Sbjct: 73  IFEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEY 132

Query: 123 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQ------LQPPL 182
           YAKVGGIS  E+N LE+DFLFG+GF LNVT +TF++Y  +LQ +M  L       L+P  
Sbjct: 133 YAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAMLMKMKSLFLEPSS 192

Query: 183 MSSSSAKSDLLKSHFCFDEDESS--NNKQQLAA 206
              SS    ++  H   +ED  S  +NK+QLAA
Sbjct: 193 FKISSKTKLVMYPH---EEDSLSTHHNKKQLAA 218

[Close]

BLAST of MS005702 vs. ExPASy Swiss-Prot
Match: Q7XC35 (Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.6e-52
Identity = 109/198 (55.05%), Postives = 147/198 (74.24%), Query Frame = 0


Query: 10  MPKLIDFLSCLLQRVAESND---RNLSVQFQSHKISAFHGLTRPTISIQSYLDRIFKYAN 69
           +P+++  LS LLQRVAE ND      +V  ++  +SAF GLT+P ISI  YL+RIF++AN
Sbjct: 10  VPRVVAILSSLLQRVAERNDAAAAAAAVGEEAAAVSAFQGLTKPAISIGGYLERIFRFAN 69

Query: 70  CSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAYYAKVGG 129
           CSP C+V+AY+YLDRF++R+P+L ++SFNVHRLLITSVL A KF+DD  YNNAY+A+VGG
Sbjct: 70  CSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFVDDICYNNAYFARVGG 129

Query: 130 ISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSAKSDLLK 189
           IS  E+N+LEVDFLFG+ F LNVTP  F SY + LQ++M  L+ QPP +       DL +
Sbjct: 130 ISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLE-QPPAV-------DLPR 189

Query: 190 SHFC-FDEDESS-NNKQQ 203
            H C  D+D++  ++KQQ
Sbjct: 190 LHCCPSDQDDAGCHHKQQ 199

[Close]

BLAST of MS005702 vs. ExPASy Swiss-Prot
Match: Q75HV0 (Cyclin-P3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP3-1 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-35
Identity = 79/175 (45.14%), Postives = 110/175 (62.86%), Query Frame = 0


Query: 8   TVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDRIFKYANC 67
           T  PK++  L+  L R  + N+  L         + FHG   P +SI+ Y +RIFKY+ C
Sbjct: 33  TEYPKVLLLLAAYLDRSVQKNEDLLDSNKIKDSSTIFHGHRAPDLSIKLYAERIFKYSEC 92

Query: 68  SPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAYYAKVGGI 127
           SP CFV+A +Y++R++Q QP + + S +VHRLLITSV+VAAKF DD ++NNA+YA+VGGI
Sbjct: 93  SPSCFVLALIYMERYLQ-QPHVYMTSLSVHRLLITSVVVAAKFTDDAFFNNAFYARVGGI 152

Query: 128 STAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSAKS 183
           ST E+N LE+D LF L F L V   TF SY   L+ + + L +  P+       S
Sbjct: 153 STVEMNRLELDLLFNLDFRLKVDLETFGSYCLQLEKETMVLVIDRPIQQVHGVNS 206

[Close]

BLAST of MS005702 vs. ExPASy TrEMBL
Match: A0A6J1D0V6 (Cyclin OS=Momordica charantia OX=3673 GN=LOC111015990 PE=3 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 5.0e-111
Identity = 205/206 (99.51%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR
Sbjct: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY
Sbjct: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA
Sbjct: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180

Query: 181 KSDLLKSHFCFDEDESSNNKQQLAAV 207
           KS+LLKSHFCFDEDESSNNKQQLAAV
Sbjct: 181 KSELLKSHFCFDEDESSNNKQQLAAV 206

[Close]

BLAST of MS005702 vs. ExPASy TrEMBL
Match: A0A5A7U636 (Cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003560 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.9e-97
Identity = 186/213 (87.32%), Postives = 195/213 (91.55%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELEDPTVM KLIDFLSCLLQRVAESNDRNLSV  Q HKIS+FHGLTRP+ISIQSYLDR
Sbjct: 1   MAELEDPTVMAKLIDFLSCLLQRVAESNDRNLSVHLQPHKISSFHGLTRPSISIQSYLDR 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLV+AKFMDDTYYNNAY
Sbjct: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVSAKFMDDTYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGIST E+NFLEVDFLFGLGFHLNVTPTTFHSYYSYLQ QM  L LQPPLMS++S 
Sbjct: 121 YAKVGGISTTEMNFLEVDFLFGLGFHLNVTPTTFHSYYSYLQRQM--LLLQPPLMSTAST 180

Query: 181 KSDL-------LKSHFCFDEDESSNNKQQLAAV 207
           KS+L       LKSHFCFDEDE+S+ KQQLAAV
Sbjct: 181 KSELLLSSSRALKSHFCFDEDEASHKKQQLAAV 211

[Close]

BLAST of MS005702 vs. ExPASy TrEMBL
Match: A0A1S3AWI3 (Cyclin OS=Cucumis melo OX=3656 GN=LOC103483393 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.9e-97
Identity = 186/213 (87.32%), Postives = 195/213 (91.55%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELEDPTVM KLIDFLSCLLQRVAESNDRNLSV  Q HKIS+FHGLTRP+ISIQSYLDR
Sbjct: 1   MAELEDPTVMAKLIDFLSCLLQRVAESNDRNLSVHLQPHKISSFHGLTRPSISIQSYLDR 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLV+AKFMDDTYYNNAY
Sbjct: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVSAKFMDDTYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGIST E+NFLEVDFLFGLGFHLNVTPTTFHSYYSYLQ QM  L LQPPLMS++S 
Sbjct: 121 YAKVGGISTTEMNFLEVDFLFGLGFHLNVTPTTFHSYYSYLQRQM--LLLQPPLMSTAST 180

Query: 181 KSDL-------LKSHFCFDEDESSNNKQQLAAV 207
           KS+L       LKSHFCFDEDE+S+ KQQLAAV
Sbjct: 181 KSELLLSSSRALKSHFCFDEDEASHKKQQLAAV 211

[Close]

BLAST of MS005702 vs. ExPASy TrEMBL
Match: A0A0A0L3W4 (Cyclin OS=Cucumis sativus OX=3659 GN=Csa_3G127030 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.4e-97
Identity = 187/213 (87.79%), Postives = 193/213 (90.61%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELED TVM KLIDFLSCLLQRVAESNDRNLSV  Q HKISAFHGLTRP+ISIQSYLDR
Sbjct: 1   MAELEDSTVMAKLIDFLSCLLQRVAESNDRNLSVNLQPHKISAFHGLTRPSISIQSYLDR 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLV+AKFMDDTYYNNAY
Sbjct: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVSAKFMDDTYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGIST E+NFLEVDFLFGLGFHLNVTPTTFHSYYSYLQ QM  L LQPPL SS+S 
Sbjct: 121 YAKVGGISTTEMNFLEVDFLFGLGFHLNVTPTTFHSYYSYLQRQM--LLLQPPLTSSAST 180

Query: 181 KSDL-------LKSHFCFDEDESSNNKQQLAAV 207
           KSDL       LKSHFCFDEDE+S+ KQQLAAV
Sbjct: 181 KSDLLLTSSRALKSHFCFDEDEASHKKQQLAAV 211

[Close]

BLAST of MS005702 vs. ExPASy TrEMBL
Match: A0A6J1IAK7 (Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111472749 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.0e-96
Identity = 185/212 (87.26%), Postives = 194/212 (91.51%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELEDPTVMPKLI+FLSCLLQRVAESND+NLSV  Q HKISAFHGLTRP ISIQSYLDR
Sbjct: 1   MAELEDPTVMPKLINFLSCLLQRVAESNDQNLSVHLQHHKISAFHGLTRPAISIQSYLDR 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSPCCFV+AY+YLDRFVQRQPSLPINSFNVHRLLITSVLV+AKFMDDTYYNNAY
Sbjct: 61  IFKYANCSPCCFVVAYIYLDRFVQRQPSLPINSFNVHRLLITSVLVSAKFMDDTYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGISTAEINFLEVDFLFGLGFHLNVTP TFHSYYSYLQ QM  L LQPPL SS+SA
Sbjct: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPNTFHSYYSYLQRQM--LLLQPPL-SSTSA 180

Query: 181 KSDL------LKSHFCFDEDESSNNKQQLAAV 207
           KS+L      LK HFCFDEDE+S+ KQQLAAV
Sbjct: 181 KSELILTARALKPHFCFDEDEASHKKQQLAAV 209

[Close]

BLAST of MS005702 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 274.6 bits (701), Expect = 6.3e-74
Identity = 141/202 (69.80%), Postives = 165/202 (81.68%), Query Frame = 0


Query: 1   MAELEDPTVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 60
           MAELE+P+VM KLI FLS LL+RVAESND    V  QS ++S FHGL+RPTI+IQSYL+R
Sbjct: 1   MAELENPSVMSKLIAFLSSLLERVAESNDLTRRVATQSQRVSVFHGLSRPTITIQSYLER 60

Query: 61  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 120
           IFKYANCSP CFV+AYVYLDRF  RQPSLPINSFNVHRLLITSV+VAAKF+DD YYNNAY
Sbjct: 61  IFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFLDDLYYNNAY 120

Query: 121 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSSSA 180
           YAKVGGIST E+NFLE+DFLFGLGF LNVTP TF++Y+SYLQ +M  LQ    ++  SS 
Sbjct: 121 YAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEMTLLQPLSLVVVPSS- 180

Query: 181 KSDLLKSHFCFDEDESSNNKQQ 203
                +S   F++DE+S+ KQQ
Sbjct: 181 -----RSLITFNDDEASHQKQQ 196

[Close]

BLAST of MS005702 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 214.5 bits (545), Expect = 7.8e-56
Identity = 113/203 (55.67%), Postives = 154/203 (75.86%), Query Frame = 0


Query: 9   VMPKLIDFLSCLLQRVAESNDRNLSVQFQSHK-ISAFHGLTRPTISIQSYLDRIFKYANC 68
           +MP +I  +S LLQRV+E+ND +LS  F+ HK ISAF+ +T+P+ISI+SY++RIFKYA+C
Sbjct: 19  IMPNVITAMSSLLQRVSETND-DLSRPFREHKRISAFNAVTKPSISIRSYMERIFKYADC 78

Query: 69  SPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAYYAKVGGI 128
           S  C+++AY+YLDRF+Q+QP LPI+S NVHRL+ITSVLV+AKFMDD  YNNA+YAKVGGI
Sbjct: 79  SDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFMDDLCYNNAFYAKVGGI 138

Query: 129 STAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQLQPPLMSSS----SAKSD 188
           +T E+N LE+DFLFG+GF LNVT +T++ Y S LQ +M+   +  PL+  +    S   +
Sbjct: 139 TTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMVMRTMYSPLLEPAFLVRSFHKN 198

Query: 189 LLKSHFCFDEDESSNNKQQLAAV 207
           LLK+ +    DE   N Q  +AV
Sbjct: 199 LLKNLY----DEDHRNSQVTSAV 216

[Close]

BLAST of MS005702 vs. TAIR 10
Match: AT5G61650.1 (CYCLIN P4;2 )

HSP 1 Score: 214.2 bits (544), Expect = 1.0e-55
Identity = 119/213 (55.87%), Postives = 157/213 (73.71%), Query Frame = 0


Query: 3   ELEDP--TVMPKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDR 62
           +L++P   +MP ++  +S LLQRV+E+ND NLS   Q  K S+F G+T+P+ISI+SYL+R
Sbjct: 13  DLQEPLAEIMPSVLTAMSYLLQRVSETND-NLS---QKQKPSSFTGVTKPSISIRSYLER 72

Query: 63  IFKYANCSPCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAY 122
           IF+YANCS  C+++AY+YLDRFV++QP LPINSFNVHRL+ITSVLV+AKFMDD  YNN Y
Sbjct: 73  IFEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFMDDLSYNNEY 132

Query: 123 YAKVGGISTAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQLQ------LQPPL 182
           YAKVGGIS  E+N LE+DFLFG+GF LNVT +TF++Y  +LQ +M  L       L+P  
Sbjct: 133 YAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREMAMLMKMKSLFLEPSS 192

Query: 183 MSSSSAKSDLLKSHFCFDEDESS--NNKQQLAA 206
              SS    ++  H   +ED  S  +NK+QLAA
Sbjct: 193 FKISSKTKLVMYPH---EEDSLSTHHNKKQLAA 218

[Close]

BLAST of MS005702 vs. TAIR 10
Match: AT3G21870.1 (cyclin p2;1 )

HSP 1 Score: 144.4 bits (363), Expect = 9.9e-35
Identity = 67/157 (42.68%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 11  PKLIDFLSCLLQRVAESNDRNLSVQFQ--SHKISAFHGLTRPTISIQSYLDRIFKYANCS 70
           P+++  +S +++++   N+  L+ Q +     + AFHG+  P+ISI  YL+RI+KY  CS
Sbjct: 25  PRVLTIISHVMEKLVARNEW-LAKQTKGFGKSLEAFHGVRAPSISIAKYLERIYKYTKCS 84

Query: 71  PCCFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAYYAKVGGIS 130
           P CFV+ YVY+DR   + P   + S NVHRLL+T V++AAK +DD +YNN +YA+VGG+S
Sbjct: 85  PACFVVGYVYIDRLAHKHPGSLVVSLNVHRLLVTCVMIAAKILDDVHYNNEFYARVGGVS 144

Query: 131 TAEINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQM 166
            A++N +E++ LF L F + V+   F SY  +L+ +M
Sbjct: 145 NADLNKMELELLFLLDFRVTVSFRVFESYCFHLEKEM 180

[Close]

BLAST of MS005702 vs. TAIR 10
Match: AT3G63120.1 (cyclin p1;1 )

HSP 1 Score: 142.1 bits (357), Expect = 4.9e-34
Identity = 75/174 (43.10%), Postives = 110/174 (63.22%), Query Frame = 0


Query: 11  PKLIDFLSCLLQRVAESNDRNLSVQFQSHKISAFHGLTRPTISIQSYLDRIFKYANCSPC 70
           P ++  LS  L+R    N  +  +      ++ F G + P ISI  YLDRIFKY+ CSP 
Sbjct: 32  PTVLSRLSSSLERSLLLNHDDKILLGSPDSVTVFDGRSPPEISIAHYLDRIFKYSCCSPS 91

Query: 71  CFVIAYVYLDRFVQRQPSLPINSFNVHRLLITSVLVAAKFMDDTYYNNAYYAKVGGISTA 130
           CFVIA++Y+D F+ +  +L +   NVHRL+IT+V++AAK  DD Y+NNAYYA+VGG++T 
Sbjct: 92  CFVIAHIYIDHFLHKTRAL-LKPLNVHRLIITTVMLAAKVFDDRYFNNAYYARVGGVTTR 151

Query: 131 EINFLEVDFLFGLGFHLNVTPTTFHSYYSYLQTQMLQ-LQLQPPLMSSSSAKSD 184
           E+N LE++ LF L F L V P TFH++   L+ Q     Q++ P+  +  A  +
Sbjct: 152 ELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQNRDGFQIEWPIKEACRANKE 204

The following BLAST results are available for this feature:

BLAST of MS005702 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146902.1	1.0e-110	99.51	cyclin-U4-1 [Momordica charantia]	[more]
XP_008438223.1	3.8e-97	87.32	PREDICTED: cyclin-U4-1 [Cucumis melo] >KAA0049071.1 cyclin-U4-1 [Cucumis melo va...	[more]
XP_004133942.1	1.1e-96	87.79	cyclin-U4-1 [Cucumis sativus] >KGN56640.1 hypothetical protein Csa_011200 [Cucum...	[more]
XP_038880049.1	5.5e-96	87.26	cyclin-U4-1 [Benincasa hispida]	[more]
XP_022974161.1	1.2e-95	87.26	cyclin-U4-1-like [Cucurbita maxima]	[more]

BLAST of MS005702 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80513	8.9e-73	69.80	Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1	[more]
Q9LY16	1.1e-54	55.67	Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1	[more]
Q9FKF6	1.4e-54	55.87	Cyclin-U4-3 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-3 PE=1 SV=1	[more]
Q7XC35	6.6e-52	55.05	Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1	[more]
Q75HV0	1.9e-35	45.14	Cyclin-P3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP3-1 PE=3 SV=1	[more]

BLAST of MS005702 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D0V6	5.0e-111	99.51	Cyclin OS=Momordica charantia OX=3673 GN=LOC111015990 PE=3 SV=1	[more]
A0A5A7U636	1.9e-97	87.32	Cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003560 PE=3 S...	[more]
A0A1S3AWI3	1.9e-97	87.32	Cyclin OS=Cucumis melo OX=3656 GN=LOC103483393 PE=3 SV=1	[more]
A0A0A0L3W4	5.4e-97	87.79	Cyclin OS=Cucumis sativus OX=3659 GN=Csa_3G127030 PE=3 SV=1	[more]
A0A6J1IAK7	6.0e-96	87.26	Cyclin OS=Cucurbita maxima OX=3661 GN=LOC111472749 PE=3 SV=1	[more]

BLAST of MS005702 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44740.1	6.3e-74	69.80	cyclin p4;1	[more]
AT5G07450.1	7.8e-56	55.67	cyclin p4;3	[more]
AT5G61650.1	1.0e-55	55.87	CYCLIN P4;2	[more]
AT3G21870.1	9.9e-35	42.68	cyclin p2;1	[more]
AT3G63120.1	4.9e-34	43.10	cyclin p1;1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012389	Cyclin P/U	PIRSF	PIRSF027110	PREG	coord: 2..205 e-value: 8.7E-76 score: 252.3
IPR013922	Cyclin PHO80-like	PFAM	PF08613	Cyclin	coord: 28..147 e-value: 2.3E-39 score: 135.3
None	No IPR available	GENE3D	1.10.472.10		coord: 7..204 e-value: 3.1E-57 score: 195.6
None	No IPR available	PANTHER	PTHR15615:SF91	CYCLIN-U4-1	coord: 1..202
None	No IPR available	PANTHER	PTHR15615	UNCHARACTERIZED	coord: 1..202
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 48..140 e-value: 0.00122388 score: 34.9069
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 56..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005702.1	MS005702.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
molecular_function	GO:0019901	protein kinase binding