MS005680 (gene) Bitter gourd (TR) v1

Overview
NameMS005680
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L18-like
Locationscaffold254: 739113 .. 739307 (-)
RNA-Seq ExpressionMS005680
SyntenyMS005680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAATGTTGAGCTTAACAATTCCCGAGCCATCGTCGTCGTCAGCTTCTGCTCTTCGACCCTCCGCCAGATTACTTACAGGTTTCATTCAGAAACCCACTTCTCTTTCATGGCCGTCTTCTTTTCCCAAGCTCTGCATCTCCTTCGACGCCATTGCAGCACCTCCATTTTCCACGCACAATAGAGTACGCCTTCTC

mRNA sequence

GAAATGTTGAGCTTAACAATTCCCGAGCCATCGTCGTCGTCAGCTTCTGCTCTTCGACCCTCCGCCAGATTACTTACAGGTTTCATTCAGAAACCCACTTCTCTTTCATGGCCGTCTTCTTTTCCCAAGCTCTGCATCTCCTTCGACGCCATTGCAGCACCTCCATTTTCCACGCACAATAGAGTACGCCTTCTC

Coding sequence (CDS)

GAAATGTTGAGCTTAACAATTCCCGAGCCATCGTCGTCGTCAGCTTCTGCTCTTCGACCCTCCGCCAGATTACTTACAGGTTTCATTCAGAAACCCACTTCTCTTTCATGGCCGTCTTCTTTTCCCAAGCTCTGCATCTCCTTCGACGCCATTGCAGCACCTCCATTTTCCACGCACAATAGAGTACGCCTTCTC

Protein sequence

EMLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNRVRLL
Homology
BLAST of MS005680 vs. NCBI nr
Match: XP_022147050.1 (uncharacterized protein LOC111016081 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 9.8e-23
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0

Query: 2  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR 61
          MLSLTIPEP SSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTH+R
Sbjct: 1  MLSLTIPEPLSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDR 60

BLAST of MS005680 vs. NCBI nr
Match: XP_038905466.1 (50S ribosomal protein L18-like [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 3.2e-13
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 0

Query: 2  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR 61
          MLS +IPE SSSSASA RP+A LL+GFIQKPTSLSWPSSF KL ISF AI AP  STH+R
Sbjct: 1  MLSTSIPE-SSSSASAFRPTATLLSGFIQKPTSLSWPSSFSKLSISFVAIKAPSLSTHHR 60

Query: 62 VRLL 66
            L+
Sbjct: 61 KSLI 63

BLAST of MS005680 vs. NCBI nr
Match: KAA0049096.1 (50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK17467.1 50S ribosomal protein L18-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-07
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 2  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR 61
          +LS +IPE SS        SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STHN 
Sbjct: 2  LLSTSIPESSS--------SATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNT 57

Query: 62 VRLL 66
            L+
Sbjct: 62 KSLI 57

BLAST of MS005680 vs. NCBI nr
Match: XP_008438261.1 (PREDICTED: 50S ribosomal protein L18-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-07
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 2  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR 61
          +LS +IPE SS        SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STHN 
Sbjct: 2  LLSTSIPESSS--------SATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNT 57

Query: 62 VRLL 66
            L+
Sbjct: 62 KSLI 57

BLAST of MS005680 vs. NCBI nr
Match: XP_022974979.1 (uncharacterized protein LOC111473828 [Cucurbita maxima])

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-07
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 3  LSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR 62
          LS +IP   S SAS   PSA LL+GFIQKPTSLSWPSSF KL I+      PP STHNR
Sbjct: 4  LSSSIPGSPSWSASLHPPSATLLSGFIQKPTSLSWPSSFSKLSIAI----KPPPSTHNR 58

BLAST of MS005680 vs. ExPASy TrEMBL
Match: A0A6J1CZ23 (uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016081 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-23
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0

Query: 2  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR 61
          MLSLTIPEP SSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTH+R
Sbjct: 1  MLSLTIPEPLSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHDR 60

BLAST of MS005680 vs. ExPASy TrEMBL
Match: A0A5A7U4A4 (50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003310 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 2  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR 61
          +LS +IPE SS        SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STHN 
Sbjct: 2  LLSTSIPESSS--------SATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNT 57

Query: 62 VRLL 66
            L+
Sbjct: 62 KSLI 57

BLAST of MS005680 vs. ExPASy TrEMBL
Match: A0A1S3AVM4 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 0

Query: 2  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR 61
          +LS +IPE SS        SA LL+ F+QKPTS SW SSF KL ISFDAI AP  STHN 
Sbjct: 2  LLSTSIPESSS--------SATLLSSFLQKPTSSSWSSSFSKLSISFDAIKAPSLSTHNT 57

Query: 62 VRLL 66
            L+
Sbjct: 62 KSLI 57

BLAST of MS005680 vs. ExPASy TrEMBL
Match: A0A6J1IJ40 (uncharacterized protein LOC111473828 OS=Cucurbita maxima OX=3661 GN=LOC111473828 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-07
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 3  LSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHNR 62
          LS +IP   S SAS   PSA LL+GFIQKPTSLSWPSSF KL I+      PP STHNR
Sbjct: 4  LSSSIPGSPSWSASLHPPSATLLSGFIQKPTSLSWPSSFSKLSIAI----KPPPSTHNR 58

BLAST of MS005680 vs. ExPASy TrEMBL
Match: A0A0A0L7S5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 2  MLSLTIPEPSSSSASALRPSARLLTGFIQKPTSLSWPSSFPKLCISFDAIAAPPFSTHN 61
          +LS +IPE SSS+A+       L++ F+ KPTS SW SSF KL ISFDAI AP  STHN
Sbjct: 2  LLSTSIPESSSSAAT-------LVSSFLHKPTSSSWSSSFSKLSISFDAIKAPSLSTHN 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022147050.19.8e-2396.67uncharacterized protein LOC111016081 [Momordica charantia][more]
XP_038905466.13.2e-1373.4450S ribosomal protein L18-like [Benincasa hispida][more]
KAA0049096.12.6e-0757.8150S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK17467.1 50S riboso... [more]
XP_008438261.12.6e-0757.81PREDICTED: 50S ribosomal protein L18-like [Cucumis melo][more]
XP_022974979.15.8e-0764.41uncharacterized protein LOC111473828 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CZ234.7e-2396.67uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
A0A5A7U4A41.3e-0757.8150S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3AVM41.3e-0757.8150S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1[more]
A0A6J1IJ402.8e-0764.41uncharacterized protein LOC111473828 OS=Cucurbita maxima OX=3661 GN=LOC111473828... [more]
A0A0A0L7S51.1e-0657.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005680.1MS005680.1mRNA