MS005571 (gene) Bitter gourd (TR) v1

Overview
NameMS005571
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase
Locationscaffold254: 47916 .. 48113 (+)
RNA-Seq ExpressionMS005571
SyntenyMS005571
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGGGAATGACGAAGAAGTACCTTATCTTCAATAAATTTGATCCAGAACCGAGCGGTGGCTCTCTCGAAAGGATCGGAAGGCAGGAGCGGTTTGTGCGGCCATGTCTCGTCGATGTACTCGAGGATAATCATGGATTCGCAGACTGGTTTTCCGCCATGGACGAGCACTGGAATCTTCTTGTGGACGGGATTGTACTG

mRNA sequence

GCGGGAATGACGAAGAAGTACCTTATCTTCAATAAATTTGATCCAGAACCGAGCGGTGGCTCTCTCGAAAGGATCGGAAGGCAGGAGCGGTTTGTGCGGCCATGTCTCGTCGATGTACTCGAGGATAATCATGGATTCGCAGACTGGTTTTCCGCCATGGACGAGCACTGGAATCTTCTTGTGGACGGGATTGTACTG

Coding sequence (CDS)

GCGGGAATGACGAAGAAGTACCTTATCTTCAATAAATTTGATCCAGAACCGAGCGGTGGCTCTCTCGAAAGGATCGGAAGGCAGGAGCGGTTTGTGCGGCCATGTCTCGTCGATGTACTCGAGGATAATCATGGATTCGCAGACTGGTTTTCCGCCATGGACGAGCACTGGAATCTTCTTGTGGACGGGATTGTACTG

Protein sequence

AGMTKKYLIFNKFDPEPSGGSLERIGRQERFVRPCLVDVLEDNHGFADWFSAMDEHWNLLVDGIVL
Homology
BLAST of MS005571 vs. NCBI nr
Match: KAG6764620.1 (hypothetical protein POTOM_032098 [Populus tomentosa])

HSP 1 Score: 60.8 bits (146), Expect = 4.9e-06
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 6   KYLIFNKFDPEPSGGSLERIGRQERFVRPCLVDVLEDNHGFADWFSAMDEHWNLLVDGIV 65
           K L+F K   E S  SL R+  Q+  + P L+DV ++NHG A+WF AM++HW+LL + ++
Sbjct: 205 KLLLFMK---ETSRSSLVRVIGQQGILGPYLIDVFDNNHGLANWFFAMEKHWDLLKNRVI 262

Query: 66  L 67
           L
Sbjct: 265 L 262

BLAST of MS005571 vs. NCBI nr
Match: XP_010941030.1 (uncharacterized protein LOC105059433, partial [Elaeis guineensis])

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-04
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 8   LIFNKFDPEPSGGSLERIGRQERFVRPCLVDVLEDNHGFADWFSAMDEHWNLLVD 63
           L+ ++  PE   G L  +G +E  V P LV+VL+D+ GFAD F+ +DEH +LLVD
Sbjct: 96  LLVDEVRPEACFGPLVGVGGEEGVVGPDLVNVLDDDEGFADRFAVVDEHGDLLVD 150

BLAST of MS005571 vs. ExPASy TrEMBL
Match: A0A6N2N206 (DNA-directed RNA polymerase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS450357 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.1e-08
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 7  YLIFNKFDPEPSGGSLERIGRQERFVRPCLVDVLEDNHGFADWFSAMDEHWNLLVDGIVL 66
          YLIF KFDPE S  SL  + RQ+  + P L+DV ++NHG A+W  AM++H +LLV+ +VL
Sbjct: 2  YLIFGKFDPETSLCSLVGVVRQQWVLGPHLIDVFDNNHGLANWLVAMEKHRDLLVNRVVL 61

BLAST of MS005571 vs. ExPASy TrEMBL
Match: A0A6I9SK34 (uncharacterized protein LOC105059433 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105059433 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.7e-05
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 0

Query: 8   LIFNKFDPEPSGGSLERIGRQERFVRPCLVDVLEDNHGFADWFSAMDEHWNLLVD 63
           L+ ++  PE   G L  +G +E  V P LV+VL+D+ GFAD F+ +DEH +LLVD
Sbjct: 96  LLVDEVRPEACFGPLVGVGGEEGVVGPDLVNVLDDDEGFADRFAVVDEHGDLLVD 150

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6764620.14.9e-0644.26hypothetical protein POTOM_032098 [Populus tomentosa][more]
XP_010941030.11.6e-0447.27uncharacterized protein LOC105059433, partial [Elaeis guineensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6N2N2061.1e-0851.67DNA-directed RNA polymerase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS450357 PE=3... [more]
A0A6I9SK347.7e-0547.27uncharacterized protein LOC105059433 OS=Elaeis guineensis var. tenera OX=51953 G... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005571.1MS005571.1mRNA