MS005439 (gene) Bitter gourd (TR) v1

Overview
NameMS005439
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMannan endo-1,4-beta-mannosidase
Locationscaffold641: 182396 .. 182500 (-)
RNA-Seq ExpressionMS005439
SyntenyMS005439
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCAAACCCATCTCAGAGGACCAAAGTCTCCTCTGCCTCCCAAGAAGCGATAAATCATGGCATCTCCATCGGAAGAACTTGGGCCTTCAGCGATGGCAGATAT

mRNA sequence

TCTTCAAACCCATCTCAGAGGACCAAAGTCTCCTCTGCCTCCCAAGAAGCGATAAATCATGGCATCTCCATCGGAAGAACTTGGGCCTTCAGCGATGGCAGATAT

Coding sequence (CDS)

TCTTCAAACCCATCTCAGAGGACCAAAGTCTCCTCTGCCTCCCAAGAAGCGATAAATCATGGCATCTCCATCGGAAGAACTTGGGCCTTCAGCGATGGCAGATAT

Protein sequence

SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY
Homology
BLAST of MS005439 vs. NCBI nr
Match: XP_022132099.1 (mannan endo-1,4-beta-mannosidase 7-like [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 9.0e-07
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQRTKVSSA QEA+NHG+SIGRTWAFSDG Y
Sbjct: 55 ASDPSQRTKVSSAFQEALNHGLSIGRTWAFSDGGY 89

BLAST of MS005439 vs. NCBI nr
Match: XP_038897716.1 (mannan endo-1,4-beta-mannosidase 7-like [Benincasa hispida])

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQRTKVSSA Q+A+NHG+SIGRTWAFSDG Y
Sbjct: 53 ASDPSQRTKVSSAFQQAVNHGLSIGRTWAFSDGGY 87

BLAST of MS005439 vs. NCBI nr
Match: PON93416.1 (1,4-alpha-glucan-branching enzyme [Trema orientale])

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQR KVSSA QEA NHG+SI RTWAFSDG Y
Sbjct: 53 ASDPSQRDKVSSAFQEAKNHGLSIARTWAFSDGGY 87

BLAST of MS005439 vs. NCBI nr
Match: XP_004147857.3 (mannan endo-1,4-beta-mannosidase 7 [Cucumis sativus] >KGN60129.2 hypothetical protein Csa_001474 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQ  KVSSA Q+A+NHG+SIGRTWAF+DG Y
Sbjct: 54 ASDPSQAPKVSSAFQQAVNHGLSIGRTWAFNDGGY 88

BLAST of MS005439 vs. NCBI nr
Match: AGG82699.1 (endo-1,4-beta-mannosidase [Morus alba var. multicaulis])

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQR KVSSA QEA NHG+SI RTWAFSDG Y
Sbjct: 54 ASDPSQRDKVSSAFQEAKNHGLSIARTWAFSDGGY 88

BLAST of MS005439 vs. ExPASy Swiss-Prot
Match: Q9FJZ3 (Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana OX=3702 GN=MAN7 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.6e-06
Identity = 21/35 (60.00%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQR+K+S+A Q+A  HG+++ RTWAFSDG Y
Sbjct: 60 ASDPSQRSKISTAFQDASRHGLTVARTWAFSDGGY 94

BLAST of MS005439 vs. ExPASy Swiss-Prot
Match: Q0JKM9 (Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=MAN1 PE=2 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 2.0e-04
Identity = 20/33 (60.61%), Postives = 27/33 (81.82%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDG 34
          +++PSQR KVS+A  EA  HG+++ RTWAFSDG
Sbjct: 66 AADPSQRGKVSAALGEAAGHGLTVARTWAFSDG 98

BLAST of MS005439 vs. ExPASy TrEMBL
Match: A0A6J1BS42 (Mannan endo-1,4-beta-mannosidase OS=Momordica charantia OX=3673 GN=LOC111005053 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.4e-07
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQRTKVSSA QEA+NHG+SIGRTWAFSDG Y
Sbjct: 55 ASDPSQRTKVSSAFQEALNHGLSIGRTWAFSDGGY 89

BLAST of MS005439 vs. ExPASy TrEMBL
Match: A0A5B7B161 (Mannan endo-1,4-beta-mannosidase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_030634 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQRTKVSSA QEA+NHG+ + RTWAFSDG Y
Sbjct: 47 ASDPSQRTKVSSAFQEAVNHGLRVARTWAFSDGGY 81

BLAST of MS005439 vs. ExPASy TrEMBL
Match: A0A0A0LDZ5 (Mannan endo-1,4-beta-mannosidase OS=Cucumis sativus OX=3659 GN=Csa_3G859700 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-05
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQ  KVSSA Q+A+NHG+SIGRTWAF+DG Y
Sbjct: 54 ASDPSQAPKVSSAFQQAVNHGLSIGRTWAFNDGGY 88

BLAST of MS005439 vs. ExPASy TrEMBL
Match: M4N902 (Mannan endo-1,4-beta-mannosidase OS=Morus alba var. multicaulis OX=170012 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-05
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQR KVSSA QEA NHG+SI RTWAFSDG Y
Sbjct: 54 ASDPSQRDKVSSAFQEAKNHGLSIARTWAFSDGGY 88

BLAST of MS005439 vs. ExPASy TrEMBL
Match: W9ST09 (Mannan endo-1,4-beta-mannosidase OS=Morus notabilis OX=981085 GN=L484_021941 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-05
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQR KVSSA QEA NHG+SI RTWAFSDG Y
Sbjct: 54 ASDPSQRDKVSSAFQEAKNHGLSIARTWAFSDGGY 88

BLAST of MS005439 vs. TAIR 10
Match: AT5G66460.1 (Glycosyl hydrolase superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 3.3e-07
Identity = 21/35 (60.00%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 1  SSNPSQRTKVSSASQEAINHGISIGRTWAFSDGRY 36
          +S+PSQR+K+S+A Q+A  HG+++ RTWAFSDG Y
Sbjct: 60 ASDPSQRSKISTAFQDASRHGLTVARTWAFSDGGY 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022132099.19.0e-0782.86mannan endo-1,4-beta-mannosidase 7-like [Momordica charantia][more]
XP_038897716.11.5e-0680.00mannan endo-1,4-beta-mannosidase 7-like [Benincasa hispida][more]
PON93416.18.4e-0577.141,4-alpha-glucan-branching enzyme [Trema orientale][more]
XP_004147857.38.4e-0571.43mannan endo-1,4-beta-mannosidase 7 [Cucumis sativus] >KGN60129.2 hypothetical pr... [more]
AGG82699.18.4e-0577.14endo-1,4-beta-mannosidase [Morus alba var. multicaulis][more]
Match NameE-valueIdentityDescription
Q9FJZ34.6e-0660.00Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana OX=3702 GN=MAN7 PE=2 ... [more]
Q0JKM92.0e-0460.61Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=M... [more]
Match NameE-valueIdentityDescription
A0A6J1BS424.4e-0782.86Mannan endo-1,4-beta-mannosidase OS=Momordica charantia OX=3673 GN=LOC111005053 ... [more]
A0A5B7B1618.2e-0674.29Mannan endo-1,4-beta-mannosidase (Fragment) OS=Davidia involucrata OX=16924 GN=D... [more]
A0A0A0LDZ54.1e-0571.43Mannan endo-1,4-beta-mannosidase OS=Cucumis sativus OX=3659 GN=Csa_3G859700 PE=3... [more]
M4N9024.1e-0577.14Mannan endo-1,4-beta-mannosidase OS=Morus alba var. multicaulis OX=170012 PE=2 S... [more]
W9ST094.1e-0577.14Mannan endo-1,4-beta-mannosidase OS=Morus notabilis OX=981085 GN=L484_021941 PE=... [more]
Match NameE-valueIdentityDescription
AT5G66460.13.3e-0760.00Glycosyl hydrolase superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005439.1MS005439.1mRNA