MS005293 (gene) Bitter gourd (TR) v1

Overview


Name	MS005293
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Auxin-responsive protein
Location	scaffold83: 637459 .. 638172 (+)
RNA-Seq Expression	MS005293
Synteny	MS005293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTCCAGAAAGATCTCAACTTGGACGCAACCGAGCTCAGGTTGGGCCTGCCGGGAACTTCGCCGGACGATCAAACTTCTCCGATCACCCGAATCTGCACCAACAAAAGATCTCTCCCGTCCGACGACCATAATCCGCCGGAACCCAAAAGAGAAAACAACAACTCCGATCCCCCTCCGACCAAGTAAGAAAACAAATTAACAAAAACAAACAAAAAACCCCCATTTAATTAATCTCTCTTATTTGAAAAAAAACATTTTTAATAACATATGATATGTTTATATATTCAGGGCTCAGGTTGTGGGGTGGCCGCCGGTGAGATCTTACCGGAAGAATTGTTTTCAGACGGCGAAGAAGAAGGATGAGGCGGCGGCGGCGATGTTCGTAAAAGTGAGCATGGATGGAGCTCCTTTTCTGAGGAAAGTTGATCTCAAGATCTATGAAGGATATCCTGAGCTTCTTCAAGCTTTGGAGAACATGTTCAAGTTCTCTTTAGGTAAGTTTTGTTTTGTTTTTGTTTTTGTTTTTTTTTTGTTCTTTAGATCTTGAGATCTGTCTTTTAGGATGAAAATATTAACAAGTTCTTGTAATTTTTGAATGTTTTTGCAGGGAAGTTTTGTGAGAGAGAGGGCTACAATGGGTCGGAATTTGTTCCAACTTATGAAGATAAAGATGGCGATTGGATGCTCGTCGGAGATGTTCCATGGGAG

mRNA sequence

ATGGCGTTCCAGAAAGATCTCAACTTGGACGCAACCGAGCTCAGGTTGGGCCTGCCGGGAACTTCGCCGGACGATCAAACTTCTCCGATCACCCGAATCTGCACCAACAAAAGATCTCTCCCGTCCGACGACCATAATCCGCCGGAACCCAAAAGAGAAAACAACAACTCCGATCCCCCTCCGACCAAGGCTCAGGTTGTGGGGTGGCCGCCGGTGAGATCTTACCGGAAGAATTGTTTTCAGACGGCGAAGAAGAAGGATGAGGCGGCGGCGGCGATGTTCGTAAAAGTGAGCATGGATGGAGCTCCTTTTCTGAGGAAAGTTGATCTCAAGATCTATGAAGGATATCCTGAGCTTCTTCAAGCTTTGGAGAACATGTTCAAGTTCTCTTTAGGGAAGTTTTGTGAGAGAGAGGGCTACAATGGGTCGGAATTTGTTCCAACTTATGAAGATAAAGATGGCGATTGGATGCTCGTCGGAGATGTTCCATGGGAG

Coding sequence (CDS)

ATGGCGTTCCAGAAAGATCTCAACTTGGACGCAACCGAGCTCAGGTTGGGCCTGCCGGGAACTTCGCCGGACGATCAAACTTCTCCGATCACCCGAATCTGCACCAACAAAAGATCTCTCCCGTCCGACGACCATAATCCGCCGGAACCCAAAAGAGAAAACAACAACTCCGATCCCCCTCCGACCAAGGCTCAGGTTGTGGGGTGGCCGCCGGTGAGATCTTACCGGAAGAATTGTTTTCAGACGGCGAAGAAGAAGGATGAGGCGGCGGCGGCGATGTTCGTAAAAGTGAGCATGGATGGAGCTCCTTTTCTGAGGAAAGTTGATCTCAAGATCTATGAAGGATATCCTGAGCTTCTTCAAGCTTTGGAGAACATGTTCAAGTTCTCTTTAGGGAAGTTTTGTGAGAGAGAGGGCTACAATGGGTCGGAATTTGTTCCAACTTATGAAGATAAAGATGGCGATTGGATGCTCGTCGGAGATGTTCCATGGGAG

Protein sequence

MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNNSDPPPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE

Homology

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BLAST of MS005293 vs. NCBI nr
Match: XP_022142982.1 (auxin-responsive protein IAA4-like [Momordica charantia])

HSP 1 Score: 344.0 bits (881), Expect = 7.3e-91
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNNSDPP 60
           MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDH PPEPKRENNNSDPP
Sbjct: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHKPPEPKRENNNSDPP 60

Query: 61  PTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGYPELL 120
           PTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGYPELL
Sbjct: 61  PTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGYPELL 120

Query: 121 QALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           QALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE
Sbjct: 121 QALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 165

[Close]

BLAST of MS005293 vs. NCBI nr
Match: XP_022946836.1 (auxin-induced protein 22D-like [Cucurbita moschata])

HSP 1 Score: 290.0 bits (741), Expect = 1.3e-74
Identity = 144/176 (81.82%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNN---- 60
           MAFQKDLNL+ATELRLGLPGTSPDDQ+SPI RI +NKR+LPSDD NPPE  R++N+    
Sbjct: 1   MAFQKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61  ---SDPPPTKAQVVGWPPVRSYRKNCFQTAKKKDE----AAAAMFVKVSMDGAPFLRKVD 120
               +PPPTKAQVVGWPPVRS+RKNCFQ AKKKDE    AA  MF+KVSMDGAPFLRKVD
Sbjct: 61  SDQENPPPTKAQVVGWPPVRSFRKNCFQ-AKKKDEGAATAAGGMFIKVSMDGAPFLRKVD 120

Query: 121 LKIYEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           LK Y+GYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE
Sbjct: 121 LKTYQGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 175

[Close]

BLAST of MS005293 vs. NCBI nr
Match: KAG6599309.1 (Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 144/178 (80.90%), Postives = 156/178 (87.64%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNN---- 60
           MAF+KDLNL+ATELRLGLPGTSPDDQ+SPI RI +NKR+LPSDD NPPE  R++N+    
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61  ---SDPPPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAA------MFVKVSMDGAPFLRK 120
               +PPPTKAQVVGWPPVRS+RKNCFQ AKKKDE AAA      MF+KVSMDGAPFLRK
Sbjct: 61  SDQENPPPTKAQVVGWPPVRSFRKNCFQ-AKKKDEVAAATTAAGGMFIKVSMDGAPFLRK 120

Query: 121 VDLKIYEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           VDLK Y+GYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE
Sbjct: 121 VDLKTYQGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 177

[Close]

BLAST of MS005293 vs. NCBI nr
Match: XP_023547310.1 (auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 289.7 bits (740), Expect = 1.6e-74
Identity = 144/178 (80.90%), Postives = 156/178 (87.64%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNN---- 60
           MAF+KDLNL+ATELRLGLPGTSPDDQ+SPI RI +NKR+LPSDD NPPE  R++N+    
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDDNSDLTK 60

Query: 61  ---SDPPPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAA------MFVKVSMDGAPFLRK 120
               +PPPTKAQVVGWPPVRS+RKNCFQ AKKKDE AAA      MF+KVSMDGAPFLRK
Sbjct: 61  SAQENPPPTKAQVVGWPPVRSFRKNCFQ-AKKKDEVAAAATAAGGMFIKVSMDGAPFLRK 120

Query: 121 VDLKIYEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           VDLK Y+GYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE
Sbjct: 121 VDLKTYQGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 177

[Close]

BLAST of MS005293 vs. NCBI nr
Match: XP_038889147.1 (auxin-induced protein 22D-like [Benincasa hispida])

HSP 1 Score: 287.7 bits (735), Expect = 6.2e-74
Identity = 144/175 (82.29%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNN---- 60
           MAF+KDLNL+ATELRLGLPGTSPDDQ+SPI R  +NKR+LPSDD N PE +RE N+    
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSSPINRANSNKRALPSDDQNLPESRREINSDPTK 60

Query: 61  ---SDPPPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAA---MFVKVSMDGAPFLRKVDL 120
               +PPPTKAQVVGWPPVRS+RKNCFQ AKKKDEAAAA   MF+KVSMDGAPFLRKVDL
Sbjct: 61  CNQENPPPTKAQVVGWPPVRSFRKNCFQ-AKKKDEAAAAATGMFIKVSMDGAPFLRKVDL 120

Query: 121 KIYEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           KIY+GYP+LLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE
Sbjct: 121 KIYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 174

[Close]

BLAST of MS005293 vs. ExPASy Swiss-Prot
Match: O24542 (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-48
Identity = 100/168 (59.52%), Postives = 124/168 (73.81%), Query Frame = 0


Query: 2   AFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLP--SDDH---NPPEPKRENNN 61
           +++K+LNL ATELRLGLPG+   D+        +NKRS P  SD+    N  +  +E+N 
Sbjct: 7   SYEKELNLKATELRLGLPGS---DEPEKRATARSNKRSSPEASDEESISNGSDVTKEDN- 66

Query: 62  SDPPPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGY 121
              PP KAQVVGWPP+RSYRKN  Q  K+++     M+VKVSM GAP+LRK+DLK+Y+ Y
Sbjct: 67  -VVPPAKAQVVGWPPIRSYRKNNVQQKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSY 126

Query: 122 PELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPW 165
           PELL+ALENMFK   G++ EREGYNGSE+ PTYEDKDGDWMLVGDVPW
Sbjct: 127 PELLKALENMFKCIFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPW 169

[Close]

BLAST of MS005293 vs. ExPASy Swiss-Prot
Match: P33077 (Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-46
Identity = 97/159 (61.01%), Postives = 118/159 (74.21%), Query Frame = 0


Query: 7   LNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNNSDPPPTKAQV 66
           +NL ATELRLGLPGT   ++T    +  +NKR LP       E   +   + PP  KAQ+
Sbjct: 11  VNLKATELRLGLPGT---EETVSCGK--SNKRVLPEATEKEIESTGKTETASPP--KAQI 70

Query: 67  VGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGYPELLQALENM 126
           VGWPPVRSYRKN  QT KK +      +VKVSMDGAP+LRK+DL +Y+ YPEL+++LENM
Sbjct: 71  VGWPPVRSYRKNNVQT-KKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENM 130

Query: 127 FKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           FKFS+G++ EREGY GS+FVPTYEDKDGDWMLVGDVPWE
Sbjct: 131 FKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWE 161

[Close]

BLAST of MS005293 vs. ExPASy Swiss-Prot
Match: P32294 (Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-45
Identity = 93/173 (53.76%), Postives = 118/173 (68.21%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITR--ICTNKRSLPSDDHNPPEPKRENNNS- 60
           + F+ DLNL ATELRLGLPGT   +  +  T   +  NKR +     +     + +++  
Sbjct: 5   VVFESDLNLKATELRLGLPGTEEKEDNNLRTHAVLRNNKRQVRETSQDSVSISKASHHQQ 64

Query: 61  -----DPPPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKI 120
                  PP KA++VGWPP+RSYRKN  Q  +        +FVKVSMDGAP+LRKVDLK+
Sbjct: 65  HVETVSAPPPKAKIVGWPPIRSYRKNSVQEGE-----GDGIFVKVSMDGAPYLRKVDLKV 124

Query: 121 YEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           Y GYPELL+ALE MFK ++G++ EREGY GSE+ PTYEDKDGDWMLVGDVPW+
Sbjct: 125 YGGYPELLKALETMFKLAIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWD 172

[Close]

BLAST of MS005293 vs. ExPASy Swiss-Prot
Match: Q38822 (Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-45
Identity = 94/162 (58.02%), Postives = 113/162 (69.75%), Query Frame = 0


Query: 7   LNLDATELRLGLPGTSPDDQTSPITRIC--TNKRSLPSDDHNPPEPKRENNNSDPPPTKA 66
           +NL  TELRLGLPGT    +       C   NKR L +D     E       +  PP KA
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETS-PPRKA 64

Query: 67  QVVGWPPVRSYRKNCFQTAKKKDE-AAAAMFVKVSMDGAPFLRKVDLKIYEGYPELLQAL 126
           Q+VGWPPVRSYRKN  Q+ K + E     ++VKVSMDGAP+LRK+DL  Y+GY ELL+AL
Sbjct: 65  QIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKAL 124

Query: 127 ENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           E MFKFS+G++ ER+GY GS+FVPTYEDKDGDWML+GDVPWE
Sbjct: 125 EVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWE 165

[Close]

BLAST of MS005293 vs. ExPASy Swiss-Prot
Match: O24543 (Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.7e-45
Identity = 90/177 (50.85%), Postives = 118/177 (66.67%), Query Frame = 0


Query: 2   AFQKDLNLDATELRLGLPGTSPDDQTSPITRI---CTNKRSLP-----------SDDHNP 61
           +++ +LNL ATELRLGLPG+    +  P +      +NKRS P           + D + 
Sbjct: 3   SYETELNLRATELRLGLPGSDEPQEKRPCSGSVVRSSNKRSSPELEESRCKSNINSDSSD 62

Query: 62  PEPKRENNNSDPPPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRK 121
                ++N     P K QVVGWPP+RS+RKN  Q  K +      M++KVSM GAP+LRK
Sbjct: 63  STTTSDHNEDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGTGMYLKVSMAGAPYLRK 122

Query: 122 VDLKIYEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPW 165
           +DLK+Y+ YPELL+AL+N+FK + G++ EREGYNGSE+ PTYEDKDGDWMLVGDVPW
Sbjct: 123 IDLKVYKSYPELLKALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPW 179

[Close]

BLAST of MS005293 vs. ExPASy TrEMBL
Match: A0A6J1CPG2 (Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111012980 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 3.5e-91
Identity = 164/165 (99.39%), Postives = 164/165 (99.39%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNNSDPP 60
           MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDH PPEPKRENNNSDPP
Sbjct: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHKPPEPKRENNNSDPP 60

Query: 61  PTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGYPELL 120
           PTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGYPELL
Sbjct: 61  PTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGYPELL 120

Query: 121 QALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           QALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE
Sbjct: 121 QALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 165

[Close]

BLAST of MS005293 vs. ExPASy TrEMBL
Match: A0A6J1G4Q6 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450780 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.1e-75
Identity = 144/176 (81.82%), Postives = 155/176 (88.07%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNN---- 60
           MAFQKDLNL+ATELRLGLPGTSPDDQ+SPI RI +NKR+LPSDD NPPE  R++N+    
Sbjct: 1   MAFQKDLNLEATELRLGLPGTSPDDQSSPINRIISNKRALPSDDQNPPESGRDSNSDLTK 60

Query: 61  ---SDPPPTKAQVVGWPPVRSYRKNCFQTAKKKDE----AAAAMFVKVSMDGAPFLRKVD 120
               +PPPTKAQVVGWPPVRS+RKNCFQ AKKKDE    AA  MF+KVSMDGAPFLRKVD
Sbjct: 61  SDQENPPPTKAQVVGWPPVRSFRKNCFQ-AKKKDEGAATAAGGMFIKVSMDGAPFLRKVD 120

Query: 121 LKIYEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           LK Y+GYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE
Sbjct: 121 LKTYQGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 175

[Close]

BLAST of MS005293 vs. ExPASy TrEMBL
Match: A0A6J1KCY1 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111493783 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 142/175 (81.14%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNN---- 60
           MAF+KDLNL+ATELRLGLPGTSPDDQ+S I RI +NKR+LPSDD NP E  R+NN+    
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSSTINRIISNKRALPSDDQNPLESGRDNNSDLTK 60

Query: 61  ---SDPPPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAA---MFVKVSMDGAPFLRKVDL 120
               +PPPTKAQVVGWPPVRS+RKNCFQ AKKKDE AAA   MF+KVSMDGAPFLRKVDL
Sbjct: 61  SAQENPPPTKAQVVGWPPVRSFRKNCFQ-AKKKDEVAAAAGGMFIKVSMDGAPFLRKVDL 120

Query: 121 KIYEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           K Y+GYPELLQALENMFKFSLGKFCEREGYNGSEFV TYEDKDGDWMLVGDVPWE
Sbjct: 121 KTYQGYPELLQALENMFKFSLGKFCEREGYNGSEFVLTYEDKDGDWMLVGDVPWE 174

[Close]

BLAST of MS005293 vs. ExPASy TrEMBL
Match: A0A5A7V9G4 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001460 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.8e-72
Identity = 140/174 (80.46%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQT-SPITRICTNKRSLPSDDHNPPEPKRENNNSDP 60
           MAF+KDLNL+ATELRLGLPGTSPDDQ+ SPI R  +NKR+LPSDD NP E +RE  NSDP
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRRE-INSDP 60

Query: 61  --------PPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLK 120
                   PPTKAQVVGWPPVRS+RKNC Q  KK++ AAA MF+KVSMDGAPFLRKVDLK
Sbjct: 61  SKCTQENTPPTKAQVVGWPPVRSFRKNCLQAKKKEEAAAAGMFIKVSMDGAPFLRKVDLK 120

Query: 121 IYEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           IY+GYP+LLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE
Sbjct: 121 IYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 173

[Close]

BLAST of MS005293 vs. ExPASy TrEMBL
Match: A0A1S3C3E2 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496036 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.8e-72
Identity = 140/174 (80.46%), Postives = 152/174 (87.36%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQT-SPITRICTNKRSLPSDDHNPPEPKRENNNSDP 60
           MAF+KDLNL+ATELRLGLPGTSPDDQ+ SPI R  +NKR+LPSDD NP E +RE  NSDP
Sbjct: 1   MAFEKDLNLEATELRLGLPGTSPDDQSNSPINRTNSNKRALPSDDQNPLESRRE-INSDP 60

Query: 61  --------PPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLK 120
                   PPTKAQVVGWPPVRS+RKNC Q  KK++ AAA MF+KVSMDGAPFLRKVDLK
Sbjct: 61  SKCTQENTPPTKAQVVGWPPVRSFRKNCLQAKKKEEAAAAGMFIKVSMDGAPFLRKVDLK 120

Query: 121 IYEGYPELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           IY+GYP+LLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE
Sbjct: 121 IYQGYPDLLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 173

[Close]

BLAST of MS005293 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-47
Identity = 97/159 (61.01%), Postives = 118/159 (74.21%), Query Frame = 0


Query: 7   LNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNNSDPPPTKAQV 66
           +NL ATELRLGLPGT   ++T    +  +NKR LP       E   +   + PP  KAQ+
Sbjct: 11  VNLKATELRLGLPGT---EETVSCGK--SNKRVLPEATEKEIESTGKTETASPP--KAQI 70

Query: 67  VGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGYPELLQALENM 126
           VGWPPVRSYRKN  QT KK +      +VKVSMDGAP+LRK+DL +Y+ YPEL+++LENM
Sbjct: 71  VGWPPVRSYRKNNVQT-KKSESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENM 130

Query: 127 FKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           FKFS+G++ EREGY GS+FVPTYEDKDGDWMLVGDVPWE
Sbjct: 131 FKFSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWE 161

[Close]

BLAST of MS005293 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 183.7 bits (465), Expect = 1.2e-46
Identity = 94/162 (58.02%), Postives = 113/162 (69.75%), Query Frame = 0


Query: 7   LNLDATELRLGLPGTSPDDQTSPITRIC--TNKRSLPSDDHNPPEPKRENNNSDPPPTKA 66
           +NL  TELRLGLPGT    +       C   NKR L +D     E       +  PP KA
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETS-PPRKA 64

Query: 67  QVVGWPPVRSYRKNCFQTAKKKDE-AAAAMFVKVSMDGAPFLRKVDLKIYEGYPELLQAL 126
           Q+VGWPPVRSYRKN  Q+ K + E     ++VKVSMDGAP+LRK+DL  Y+GY ELL+AL
Sbjct: 65  QIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSELLKAL 124

Query: 127 ENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           E MFKFS+G++ ER+GY GS+FVPTYEDKDGDWML+GDVPWE
Sbjct: 125 EVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWE 165

[Close]

BLAST of MS005293 vs. TAIR 10
Match: AT4G14560.1 (indole-3-acetic acid inducible )

HSP 1 Score: 177.9 bits (450), Expect = 6.5e-45
Identity = 93/169 (55.03%), Postives = 111/169 (65.68%), Query Frame = 0


Query: 1   MAFQKDLNLDATELRLGLPGTSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNNSD-- 60
           M     LNL  TELRLGLPG   + Q   +   C    +           KR+NN+S   
Sbjct: 1   MEVTNGLNLKDTELRLGLPGAQEEQQ---LELSCVRSNN-----------KRKNNDSTEE 60

Query: 61  --PPPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGY 120
             PPP K Q+VGWPPVRS RKN        +      +VKVSMDGAP+LRK+DLK+Y+ Y
Sbjct: 61  SAPPPAKTQIVGWPPVRSNRKN--------NNNKNVSYVKVSMDGAPYLRKIDLKMYKNY 120

Query: 121 PELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           PELL+ALENMFKF++G++ EREGY GS FVPTYEDKDGDWMLVGDVPW+
Sbjct: 121 PELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWD 147

[Close]

BLAST of MS005293 vs. TAIR 10
Match: AT3G23030.1 (indole-3-acetic acid inducible 2 )

HSP 1 Score: 171.4 bits (433), Expect = 6.1e-43
Identity = 91/168 (54.17%), Postives = 113/168 (67.26%), Query Frame = 0


Query: 1   MAFQK--DLNLDATELRLGLPG-TSPDDQTSPITRICTNKRSLPSDDHNPPEPKRENNNS 60
           MA++K  +LNL  TEL LGLPG T    +   ++ + +N + L  +  +  E        
Sbjct: 1   MAYEKVNELNLKDTELCLGLPGRTEKIKEEQEVSCVKSNNKRLFEETRDEEE-------- 60

Query: 61  DPPPTKAQVVGWPPVRSYRKNCFQTAKKKDEAAAAMFVKVSMDGAPFLRKVDLKIYEGYP 120
             PPTK Q+VGWPPVRS RKN            +  +VKVSMDGAP+LRK+DLK Y+ YP
Sbjct: 61  STPPTKTQIVGWPPVRSSRKN----------NNSVSYVKVSMDGAPYLRKIDLKTYKNYP 120

Query: 121 ELLQALENMFKFSLGKFCEREGYNGSEFVPTYEDKDGDWMLVGDVPWE 166
           ELL+ALENMFK  +G++CEREGY GS FVPTYEDKDGDWMLVGDVPW+
Sbjct: 121 ELLKALENMFKVMIGEYCEREGYKGSGFVPTYEDKDGDWMLVGDVPWD 150

[Close]

BLAST of MS005293 vs. TAIR 10
Match: AT1G04250.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33
Identity = 91/197 (46.19%), Postives = 109/197 (55.33%), Query Frame = 0


Query: 6   DLNLDATELRLGLPGTSPDDQTSPITRICTNKR------SLPSDDHNPPEPKRENNNSD- 65
           +LNL  TEL LGLPG    D  +P+T    NKR       L  + +N P  K  +   D 
Sbjct: 6   ELNLRETELCLGLPG---GDTVAPVT---GNKRGFSETVDLKLNLNNEPANKEGSTTHDV 65

Query: 66  ----------------PPPTKAQVVGWPPVRSYRKNCFQTAKKKDEA-AAAMFVKVSMDG 125
                            PP KAQVVGWPPVRSYRKN   + +K      AA FVKVSMDG
Sbjct: 66  VTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKSSGGPEAAAFVKVSMDG 125

Query: 126 APFLRKVDLKIYEGYPELLQALENMF-KFSLGKFCEREG-------------YNGSEFVP 165
           AP+LRK+DL++Y+ Y EL  AL NMF  F++GK    EG              N  ++VP
Sbjct: 126 APYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGMIDFMNERKLMDLVNSWDYVP 185

The following BLAST results are available for this feature:

BLAST of MS005293 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142982.1	7.3e-91	99.39	auxin-responsive protein IAA4-like [Momordica charantia]	[more]
XP_022946836.1	1.3e-74	81.82	auxin-induced protein 22D-like [Cucurbita moschata]	[more]
KAG6599309.1	1.6e-74	80.90	Auxin-induced protein 22D, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023547310.1	1.6e-74	80.90	auxin-induced protein 22D-like [Cucurbita pepo subsp. pepo]	[more]
XP_038889147.1	6.2e-74	82.29	auxin-induced protein 22D-like [Benincasa hispida]	[more]

BLAST of MS005293 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24542	1.6e-48	59.52	Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S...	[more]
P33077	1.5e-46	61.01	Auxin-responsive protein IAA4 OS=Arabidopsis thaliana OX=3702 GN=IAA4 PE=1 SV=2	[more]
P32294	1.7e-45	53.76	Auxin-induced protein 22B OS=Vigna radiata var. radiata OX=3916 GN=AUX22B PE=2 S...	[more]
Q38822	1.7e-45	58.02	Auxin-responsive protein IAA3 OS=Arabidopsis thaliana OX=3702 GN=IAA3 PE=1 SV=1	[more]
O24543	3.7e-45	50.85	Auxin-induced protein 22E OS=Vigna radiata var. radiata OX=3916 GN=AUX22E PE=2 S...	[more]

BLAST of MS005293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPG2	3.5e-91	99.39	Auxin-responsive protein OS=Momordica charantia OX=3673 GN=LOC111012980 PE=3 SV=...	[more]
A0A6J1G4Q6	6.1e-75	81.82	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111450780 PE=3 SV=1	[more]
A0A6J1KCY1	1.7e-72	81.14	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111493783 PE=3 SV=1	[more]
A0A5A7V9G4	4.8e-72	80.46	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3C3E2	4.8e-72	80.46	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103496036 PE=3 SV=1	[more]

BLAST of MS005293 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43700.1	1.1e-47	61.01	AUX/IAA transcriptional regulator family protein	[more]
AT1G04240.1	1.2e-46	58.02	AUX/IAA transcriptional regulator family protein	[more]
AT4G14560.1	6.5e-45	55.03	indole-3-acetic acid inducible	[more]
AT3G23030.1	6.1e-43	54.17	indole-3-acetic acid inducible 2	[more]
AT1G04250.1	1.1e-33	46.19	AUX/IAA transcriptional regulator family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 86..165 e-value: 7.2E-34 score: 117.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	PANTHER	PTHR31734:SF167	AUXIN-RESPONSIVE PROTEIN	coord: 1..165
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 90..165
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 47..165 e-value: 2.0E-43 score: 149.0
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 1..165
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 92..165 score: 24.155088

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005293.1	MS005293.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding