MS005278 (gene) Bitter gourd (TR) v1

Overview


Name	MS005278
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Alba domain-containing protein
Location	scaffold83: 545451 .. 546832 (-)
RNA-Seq Expression	MS005278
Synteny	MS005278

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGATTGCAGTATCGGGAGCCACTGAAACACAGAAGAAGAACAGAATTCAGGTTTCAAACACCAAGAAACCACTATTCTTCTACGTTAACCTCGCTAAGGTATACATAACAGATTCTCTAATTATTTGATTCTTTGATTCTTTGATTATTTGATTGGATTATAATTCGGGAGAATCGCGATTTCGTTTTGTGTTCTTTTGGTTCTCGATAAATGAAATGGAAATGTGCATGAACTATGAACTATCCATGGTGATTTGTAGAATTTGAACAAATTTATTTGCACAATTCGTCTGCTTTAGAATTTGAACGAGAAATCTTCCGCAATTCCTAATTCGATACCGATTTCTAAATCATCTTGCTCTCTGTTTGCCCTAAAATCATCCCCTTTCACCGATCTTCCATTTCGATGAGATCGAGATTCGAGACAACAGTTTTTTACGTGCTTGTTATTGTTCTTGATTCAGAGGTATATTCAACAGCACAATGAGGTTGAGCTTTCTGCCCTGGGAATGGGTAAATTTTTTTTTCTCTTTTCCAAAGATCTCTTTTTCTGATATCGATATATCGTCCAGAAATGGTATCTGACGAATTTTTGGTTTTCTTGGCTCGAATTCTTTGCATCGTTACAGCAATCACTACTGTTGTCACAATTGCGGAGATTCTAAAGAACAATGGGTTGGCTACAGAGAAGAGTAATTAACACTATTGTCTCTTCGTTTTCAATGCTAATTTCTGTTCCATTTATTCACATTATCTATGGTGATACGGTGATTGCTGATAACGCATGATTTTGTTATGAAACAGAAGTTTTGACTTCTACAGTTGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCCAAGGTAAGTTCAATCTTTTATCTAATTTGCCATAAGTGGTAAAATAAATAAATAACTCTTGATCAGTTAAGTTATTAACATTCTTATATGGGATCTGAGATTATTATTTGGGTATGTTCTGTTCTTCATAGTTCGATTTGTACATTTTTATAGCTTAATTCTGAGTGTCTTCTCGTTTGAATTCTATAAAATCCATCAGTTGTTTTGAACAAACATAGCTTGATAATCTAGTTTTAATAGTGATTTTGATTCTGTCATGGCAGTGATATACTAGTGAAAAATGATTTTCGCTCCAAAACATGACTATAATATTCAATTTGATTTAGTTGAAAGATATGCATCATTTCACAGCTCATAATCTGTGTAGACCAAGGATTTGTTTCTTGTGGAATCTGAAATTCTTTTTTGTTTGTTTTTTCATTCTGCTTTTGATAGATTGAGATTGTTCTGGGGAAGTCTGAGAAATTTGATTCTCTGATGACTGCGGCCACAGCTGCTGCGCCAGAGGCA

mRNA sequence

ATGGCGACGATTGCAGTATCGGGAGCCACTGAAACACAGAAGAAGAACAGAATTCAGGTTTCAAACACCAAGAAACCACTATTCTTCTACGTTAACCTCGCTAAGAGGTATATTCAACAGCACAATGAGGTTGAGCTTTCTGCCCTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTAAAGAACAATGGGTTGGCTACAGAGAAGAAAGTTTTGACTTCTACAGTTGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCCAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAATTTGATTCTCTGATGACTGCGGCCACAGCTGCTGCGCCAGAGGCA

Coding sequence (CDS)

ATGGCGACGATTGCAGTATCGGGAGCCACTGAAACACAGAAGAAGAACAGAATTCAGGTTTCAAACACCAAGAAACCACTATTCTTCTACGTTAACCTCGCTAAGAGGTATATTCAACAGCACAATGAGGTTGAGCTTTCTGCCCTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTAAAGAACAATGGGTTGGCTACAGAGAAGAAAGTTTTGACTTCTACAGTTGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCCAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAATTTGATTCTCTGATGACTGCGGCCACAGCTGCTGCGCCAGAGGCA

Protein sequence

MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA

Homology

[Close]

BLAST of MS005278 vs. NCBI nr
Match: XP_022143158.1 (uncharacterized protein At2g34160 [Momordica charantia])

HSP 1 Score: 219.2 bits (557), Expect = 2.0e-53
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 60
           MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA
Sbjct: 1   MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 60

Query: 61  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA 120
           EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA
Sbjct: 61  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA 119

[Close]

BLAST of MS005278 vs. NCBI nr
Match: XP_022965411.1 (uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 208.4 bits (529), Expect = 3.5e-50
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 3   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 62
           TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI
Sbjct: 39  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 98

Query: 63  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAA 117
           LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT AA
Sbjct: 99  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAA 152

[Close]

BLAST of MS005278 vs. NCBI nr
Match: KAG6586319.1 (hypothetical protein SDJN03_19052, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.2 bits (526), Expect = 7.7e-50
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 3   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 62
           TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI
Sbjct: 4   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 63

Query: 63  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA 120
           LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT  A  A
Sbjct: 64  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVTAEAA 120

[Close]

BLAST of MS005278 vs. NCBI nr
Match: XP_022938043.1 (uncharacterized protein At2g34160-like [Cucurbita moschata])

HSP 1 Score: 205.7 bits (522), Expect = 2.2e-49
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 3   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 62
           TIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI
Sbjct: 4   TIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 63

Query: 63  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA 120
           LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT AA  A
Sbjct: 64  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAEAA 120

[Close]

BLAST of MS005278 vs. NCBI nr
Match: XP_038877259.1 (uncharacterized protein At2g34160-like [Benincasa hispida])

HSP 1 Score: 205.7 bits (522), Expect = 2.2e-49
Identity = 114/116 (98.28%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MATIAVSG--ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 60
           MATIAVSG  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 1   MATIAVSGAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 60

Query: 61  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA 115
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA
Sbjct: 61  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA 116

[Close]

BLAST of MS005278 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-37
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 9   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 68
           AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 69  ATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA 120
           A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA     +A
Sbjct: 74  AVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

[Close]

BLAST of MS005278 vs. ExPASy TrEMBL
Match: A0A6J1CQ10 (uncharacterized protein At2g34160 OS=Momordica charantia OX=3673 GN=LOC111013094 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 9.5e-54
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 60
           MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA
Sbjct: 1   MATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 60

Query: 61  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA 120
           EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA
Sbjct: 61  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA 119

[Close]

BLAST of MS005278 vs. ExPASy TrEMBL
Match: A0A6J1HLL6 (uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC111465325 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 3   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 62
           TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI
Sbjct: 39  TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 98

Query: 63  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAA 117
           LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT AA
Sbjct: 99  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAA 152

[Close]

BLAST of MS005278 vs. ExPASy TrEMBL
Match: A0A6J1FHQ7 (uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC111444252 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 113/117 (96.58%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 3   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 62
           TIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI
Sbjct: 4   TIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 63

Query: 63  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA 120
           LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT AA  A
Sbjct: 64  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAEAA 120

[Close]

BLAST of MS005278 vs. ExPASy TrEMBL
Match: A0A5D3D4G4 (Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001630 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.4e-49
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MATIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60
           MATIAVSG   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA 115
           TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA 117

[Close]

BLAST of MS005278 vs. ExPASy TrEMBL
Match: A0A1S3C2U1 (uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.4e-49
Identity = 114/117 (97.44%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   MATIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60
           MATIAVSG   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 1   MATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 60

Query: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA 115
           TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA
Sbjct: 61  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATA 117

[Close]

BLAST of MS005278 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-45
Identity = 95/112 (84.82%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 2   ATIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAE 61
           AT   +   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+E
Sbjct: 24  ATTTTTATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISE 83

Query: 62  ILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT 114
           ILKNNGLATEKKVLTSTVGMKDE KG++VQKAKIEIVLGKS+KFDSL+   T
Sbjct: 84  ILKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVT 135

[Close]

BLAST of MS005278 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 158.7 bits (400), Expect = 2.9e-39
Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 9   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 68
           A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG 
Sbjct: 14  AVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGF 73

Query: 69  ATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAA 113
           A EKK++TSTV +KD+++GR VQKAKIEI L KSEKFD LM AA
Sbjct: 74  AVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAA 117

[Close]

BLAST of MS005278 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 157.1 bits (396), Expect = 8.5e-39
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 9   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 68
           AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 69  ATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAAAPEA 120
           A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA     +A
Sbjct: 74  AVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

The following BLAST results are available for this feature:

BLAST of MS005278 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143158.1	2.0e-53	100.00	uncharacterized protein At2g34160 [Momordica charantia]	[more]
XP_022965411.1	3.5e-50	99.12	uncharacterized protein At2g34160-like [Cucurbita maxima]	[more]
KAG6586319.1	7.7e-50	96.58	hypothetical protein SDJN03_19052, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938043.1	2.2e-49	96.58	uncharacterized protein At2g34160-like [Cucurbita moschata]	[more]
XP_038877259.1	2.2e-49	98.28	uncharacterized protein At2g34160-like [Benincasa hispida]	[more]

BLAST of MS005278 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	1.2e-37	74.77	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of MS005278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ10	9.5e-54	100.00	uncharacterized protein At2g34160 OS=Momordica charantia OX=3673 GN=LOC111013094...	[more]
A0A6J1HLL6	1.7e-50	99.12	uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC1114653...	[more]
A0A6J1FHQ7	1.1e-49	96.58	uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A5D3D4G4	1.4e-49	97.44	Alba DNA/RNA-binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C2U1	1.4e-49	97.44	uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 S...	[more]

BLAST of MS005278 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04620.1	1.2e-45	84.82	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	2.9e-39	78.85	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	8.5e-39	74.77	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 16..78 e-value: 1.9E-13 score: 50.0
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..119 e-value: 8.5E-62 score: 205.5
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 7..115
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 14..119 e-value: 1.4E-53 score: 181.7
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 15..110
None	No IPR available	PANTHER	PTHR31947:SF19	ALBA DNA/RNA-BINDING PROTEIN	coord: 7..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005278.1	MS005278.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding