MS005254 (gene) Bitter gourd (TR) v1

Overview


Name	MS005254
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like
Location	scaffold83: 340495 .. 341037 (-)
RNA-Seq Expression	MS005254
Synteny	MS005254

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTCGCAGAATCTTCATCCAACAACAACAACAACAGTGGCAGCGCCGCGGCGCCATGCTCATCGCCGCCGTCGTCGTCGTCGTCGGGCGCCACGCCGAGCCGGTACGAGAACCAGAAACGGCGGGACTGGAACACGTTCTGCCAGTACCTGCGGAACCACCGGCCGCCGCTGGCGCTGCCGATGTGCAGTGGGGCCCACGTGCTGGAATTCCTCCGGTACTTAGACCAGTTCGGGAAGACCAAAGTCCACAACCAAAACTGCCCGTTCTTCGGCCTGCCCAACCCGCCCGCCCCCTGCCCCTGCCCGCTCCGCCAGGCCTGGGGGAGCCTCGACGCTCTAATCGGGCGCCTCCGCGCCGCCTACGAGGAGAACGGCTTCCGCCCCGAATCCAACCCCTTCGGAGCAAGAGCCGTCAGATTATATCTAAGGGAAGTTCGTGATTTTCAGGCCAAAGCTCGTGGCGTTAGCTATGAGAAGAAGAGGAAGAGGCCTAAGCAAAAAATCACTAATTCCACACAAGATCCTCCAACAACA

mRNA sequence

ATGGATTTGTTCGCAGAATCTTCATCCAACAACAACAACAACAGTGGCAGCGCCGCGGCGCCATGCTCATCGCCGCCGTCGTCGTCGTCGTCGGGCGCCACGCCGAGCCGGTACGAGAACCAGAAACGGCGGGACTGGAACACGTTCTGCCAGTACCTGCGGAACCACCGGCCGCCGCTGGCGCTGCCGATGTGCAGTGGGGCCCACGTGCTGGAATTCCTCCGGTACTTAGACCAGTTCGGGAAGACCAAAGTCCACAACCAAAACTGCCCGTTCTTCGGCCTGCCCAACCCGCCCGCCCCCTGCCCCTGCCCGCTCCGCCAGGCCTGGGGGAGCCTCGACGCTCTAATCGGGCGCCTCCGCGCCGCCTACGAGGAGAACGGCTTCCGCCCCGAATCCAACCCCTTCGGAGCAAGAGCCGTCAGATTATATCTAAGGGAAGTTCGTGATTTTCAGGCCAAAGCTCGTGGCGTTAGCTATGAGAAGAAGAGGAAGAGGCCTAAGCAAAAAATCACTAATTCCACACAAGATCCTCCAACAACA

Coding sequence (CDS)

ATGGATTTGTTCGCAGAATCTTCATCCAACAACAACAACAACAGTGGCAGCGCCGCGGCGCCATGCTCATCGCCGCCGTCGTCGTCGTCGTCGGGCGCCACGCCGAGCCGGTACGAGAACCAGAAACGGCGGGACTGGAACACGTTCTGCCAGTACCTGCGGAACCACCGGCCGCCGCTGGCGCTGCCGATGTGCAGTGGGGCCCACGTGCTGGAATTCCTCCGGTACTTAGACCAGTTCGGGAAGACCAAAGTCCACAACCAAAACTGCCCGTTCTTCGGCCTGCCCAACCCGCCCGCCCCCTGCCCCTGCCCGCTCCGCCAGGCCTGGGGGAGCCTCGACGCTCTAATCGGGCGCCTCCGCGCCGCCTACGAGGAGAACGGCTTCCGCCCCGAATCCAACCCCTTCGGAGCAAGAGCCGTCAGATTATATCTAAGGGAAGTTCGTGATTTTCAGGCCAAAGCTCGTGGCGTTAGCTATGAGAAGAAGAGGAAGAGGCCTAAGCAAAAAATCACTAATTCCACACAAGATCCTCCAACAACA

Protein sequence

MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQDPPTT

Homology

[Close]

BLAST of MS005254 vs. NCBI nr
Match: XP_022143023.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Momordica charantia])

HSP 1 Score: 369.4 bits (947), Expect = 1.8e-98
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL
Sbjct: 1   MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL 60

Query: 61  ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQDPPT 180
           RAAY ENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQDPPT
Sbjct: 121 RAAYXENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQDPPT 180

Query: 181 T 182
           T
Sbjct: 181 T 181

[Close]

BLAST of MS005254 vs. NCBI nr
Match: XP_022965962.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima])

HSP 1 Score: 312.0 bits (798), Expect = 3.4e-81
Identity = 161/190 (84.74%), Postives = 167/190 (87.89%), Query Frame = 0


Query: 1   MDLFAESSSN----NNNNSGSAAA----PCSSPPSSSS--SGATPSRYENQKRRDWNTFC 60
           MDLF+ESSSN    +  N+ +AAA     C SP SSSS  + ATPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180
           GSLDALIGRLRAAYEENG RPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180

[Close]

BLAST of MS005254 vs. NCBI nr
Match: XP_023538298.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 311.2 bits (796), Expect = 5.8e-81
Identity = 161/190 (84.74%), Postives = 167/190 (87.89%), Query Frame = 0


Query: 1   MDLFAESSSN----NNNNSGSAAA----PCSSPPSSSS--SGATPSRYENQKRRDWNTFC 60
           MDLF+ESSSN    +  N+ +AAA     C SP SSSS  + ATPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNPIPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180
           GSLDALIGRLRAAYEENG RPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180

[Close]

BLAST of MS005254 vs. NCBI nr
Match: XP_022938293.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata] >KAG7021182.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 311.2 bits (796), Expect = 5.8e-81
Identity = 161/190 (84.74%), Postives = 167/190 (87.89%), Query Frame = 0


Query: 1   MDLFAESSSN----NNNNSGSAAA----PCSSPPSSSS--SGATPSRYENQKRRDWNTFC 60
           MDLF+ESSSN    +  N+ +AAA     C SP SSSS  + ATPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180
           GSLDALIGRLRAAYEENG RPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180

[Close]

BLAST of MS005254 vs. NCBI nr
Match: KAG6586335.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 310.5 bits (794), Expect = 9.8e-81
Identity = 158/188 (84.04%), Postives = 163/188 (86.70%), Query Frame = 0


Query: 1   MDLFAESSSN------NNNNSGSAAAPCSSPPSSSS--SGATPSRYENQKRRDWNTFCQY 60
           MDLF+ESSSN       N  + +    C SP SSSS  + ATPSRYENQKRRDWNTFCQY
Sbjct: 1   MDLFSESSSNPTPYDTTNTAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFCQY 60

Query: 61  LRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGS 120
           LRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQAWGS
Sbjct: 61  LRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGS 120

Query: 121 LDALIGRLRAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIT 180
           LDALIGRLRAAYEENG RPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKI 
Sbjct: 121 LDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIA 180

[Close]

BLAST of MS005254 vs. ExPASy Swiss-Prot
Match: Q6NNI3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.8e-69
Identity = 135/178 (75.84%), Postives = 146/178 (82.02%), Query Frame = 0


Query: 1   MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDL +   + N N+S        +PPSS       SRYENQKRRDWNTFCQYLRNHRPPL
Sbjct: 1   MDLISHQPNKNPNSSTQL-----TPPSS-------SRYENQKRRDWNTFCQYLRNHRPPL 60

Query: 61  ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           +LP CSGAHVLEFLRYLDQFGKTKVH+QNC FFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  SLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQDP 179
           RAAYEENG  PE+NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR  ++    TQ P
Sbjct: 121 RAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQ-KPQTQPP 165

[Close]

BLAST of MS005254 vs. ExPASy Swiss-Prot
Match: Q9M836 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.2e-68
Identity = 128/176 (72.73%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDL +++ +N N N+  +    +  PSS SS  + SRYENQKRRDWNTFCQYLRNH PPL
Sbjct: 1   MDLISQNHNNRNPNTSLS----TQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPL 60

Query: 61  ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           +L  CSGAHVL+FLRYLDQFGKTKVH+QNC FFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  SLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQ 177
           RAAYEENG  PE++PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K    +Q
Sbjct: 121 RAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQ 172

[Close]

BLAST of MS005254 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.9e-65
Identity = 123/164 (75.00%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 5   AESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPLALPM 64
           A   S ++++ G      +   S+S++GA+PSRYE+QKRRDWNTF QYLRNHRPPL+L  
Sbjct: 8   AAPDSPHSDSGGGGGGMATGATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLAR 67

Query: 65  CSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAY 124
           CSGAHVLEFLRYLDQFGKTKVH   CPFFG P PPAPCPCPLRQAWGSLDAL+GRLRAAY
Sbjct: 68  CSGAHVLEFLRYLDQFGKTKVHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAY 127

Query: 125 EENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 168
           EENG RPE+NPFGARAVRLYLREVR+ QA+ARGVSYE KKRK+P
Sbjct: 128 EENGGRPENNPFGARAVRLYLREVREHQARARGVSYEKKKRKKP 171

[Close]

BLAST of MS005254 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.0e-64
Identity = 127/170 (74.71%), Postives = 142/170 (83.53%), Query Frame = 0


Query: 8   SSNNNNNSGSAAAPCSSPPSSSSS-GATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCS 67
           S+N+++ +G+     + P SSSSS  A  SRYENQKRRDWNTF QYLRNHRPPL+L  CS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 68  GAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 127
           GAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 128 NGFRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKITNST 176
           NG +PE+NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    + S+
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSS 193

[Close]

BLAST of MS005254 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.8e-64
Identity = 122/164 (74.39%), Postives = 137/164 (83.54%), Query Frame = 0


Query: 8   SSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCSG 67
           S   N   G +++  SSP   + +  +PSRYE QKRRDWNTF QYLRNHRPPL+L  CSG
Sbjct: 12  SGGGNGGGGGSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSG 71

Query: 68  AHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEEN 127
           AHVLEFLRYLDQFGKTKVH   CPFFG P+PPAPCPCPLRQAWGSLDAL+GRLRAA+EEN
Sbjct: 72  AHVLEFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEN 131

Query: 128 GFRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQK 171
           G RPESNPF ARAVRLYLREVR+ QA+ARGVSYE KKRK+P+Q+
Sbjct: 132 GGRPESNPFAARAVRLYLREVREHQARARGVSYEKKKRKKPQQQ 175

[Close]

BLAST of MS005254 vs. ExPASy TrEMBL
Match: A0A6J1CPQ1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Momordica charantia OX=3673 GN=LOC111013011 PE=3 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 8.6e-99
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0


Query: 1   MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL
Sbjct: 1   MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL 60

Query: 61  ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQDPPT 180
           RAAY ENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQDPPT
Sbjct: 121 RAAYXENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQDPPT 180

Query: 181 T 182
           T
Sbjct: 181 T 181

[Close]

BLAST of MS005254 vs. ExPASy TrEMBL
Match: A0A6J1HLQ5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465684 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.6e-81
Identity = 161/190 (84.74%), Postives = 167/190 (87.89%), Query Frame = 0


Query: 1   MDLFAESSSN----NNNNSGSAAA----PCSSPPSSSS--SGATPSRYENQKRRDWNTFC 60
           MDLF+ESSSN    +  N+ +AAA     C SP SSSS  + ATPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180
           GSLDALIGRLRAAYEENG RPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180

[Close]

BLAST of MS005254 vs. ExPASy TrEMBL
Match: A0A6J1FIH1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444424 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.8e-81
Identity = 161/190 (84.74%), Postives = 167/190 (87.89%), Query Frame = 0


Query: 1   MDLFAESSSN----NNNNSGSAAA----PCSSPPSSSS--SGATPSRYENQKRRDWNTFC 60
           MDLF+ESSSN    +  N+ +AAA     C SP SSSS  + ATPSRYENQKRRDWNTFC
Sbjct: 1   MDLFSESSSNPTPYDTTNTAAAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTFC 60

Query: 61  QYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAW 120
           QYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQAW
Sbjct: 61  QYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180
           GSLDALIGRLRAAYEENG RPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK
Sbjct: 121 GSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQK 180

[Close]

BLAST of MS005254 vs. ExPASy TrEMBL
Match: A0A5D3BFP5 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001100 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 148/177 (83.62%), Postives = 158/177 (89.27%), Query Frame = 0


Query: 1   MDLFAESSSNNNN--NSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLF+ESSSNN+N   + +   P ++  S+++S  TPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNDNPTTTTTTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLAL MCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNST 176
           RLRAAYEENG R E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKI  S+
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 177

[Close]

BLAST of MS005254 vs. ExPASy TrEMBL
Match: A0A1S3C396 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC103496393 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.1e-77
Identity = 148/177 (83.62%), Postives = 158/177 (89.27%), Query Frame = 0


Query: 1   MDLFAESSSNNNN--NSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRP 60
           MDLF+ESSSNN+N   + +   P ++  S+++S  TPSRYENQKRRDWNTFCQYLRNHRP
Sbjct: 1   MDLFSESSSNNDNPTTTTTTTTPPTATTSAAASATTPSRYENQKRRDWNTFCQYLRNHRP 60

Query: 61  PLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120
           PLAL MCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQAWGSLDALIG
Sbjct: 61  PLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIG 120

Query: 121 RLRAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNST 176
           RLRAAYEENG R E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKI  S+
Sbjct: 121 RLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKINTSS 177

[Close]

BLAST of MS005254 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 263.5 bits (672), Expect = 1.3e-70
Identity = 135/178 (75.84%), Postives = 146/178 (82.02%), Query Frame = 0


Query: 1   MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDL +   + N N+S        +PPSS       SRYENQKRRDWNTFCQYLRNHRPPL
Sbjct: 1   MDLISHQPNKNPNSSTQL-----TPPSS-------SRYENQKRRDWNTFCQYLRNHRPPL 60

Query: 61  ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           +LP CSGAHVLEFLRYLDQFGKTKVH+QNC FFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  SLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQDP 179
           RAAYEENG  PE+NPFG+RAVRL+LREVRDFQAKARGVSYEKKRKR  ++    TQ P
Sbjct: 121 RAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKARGVSYEKKRKRVNRQ-KPQTQPP 165

[Close]

BLAST of MS005254 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 260.8 bits (665), Expect = 8.3e-70
Identity = 128/176 (72.73%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MDLFAESSSNNNNNSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPL 60
           MDL +++ +N N N+  +    +  PSS SS  + SRYENQKRRDWNTFCQYLRNH PPL
Sbjct: 1   MDLISQNHNNRNPNTSLS----TQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPPL 60

Query: 61  ALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120
           +L  CSGAHVL+FLRYLDQFGKTKVH+QNC FFGLPNPPAPCPCPLRQAWGSLDALIGRL
Sbjct: 61  SLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKITNSTQ 177
           RAAYEENG  PE++PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   K    +Q
Sbjct: 121 RAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQITQSQ 172

[Close]

BLAST of MS005254 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 247.7 bits (631), Expect = 7.3e-66
Identity = 127/170 (74.71%), Postives = 142/170 (83.53%), Query Frame = 0


Query: 8   SSNNNNNSGSAAAPCSSPPSSSSS-GATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCS 67
           S+N+++ +G+     + P SSSSS  A  SRYENQKRRDWNTF QYLRNHRPPL+L  CS
Sbjct: 24  SNNSSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCS 83

Query: 68  GAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEE 127
           GAHVLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EE
Sbjct: 84  GAHVLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE 143

Query: 128 NGFRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRPKQKITNST 176
           NG +PE+NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP    + S+
Sbjct: 144 NGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSS 193

[Close]

BLAST of MS005254 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 243.8 bits (621), Expect = 1.1e-64
Identity = 128/166 (77.11%), Postives = 137/166 (82.53%), Query Frame = 0


Query: 9   SNNNNNSGSAAAPCSSPPSSSSSGA------TPSRYENQKRRDWNTFCQYLRNHRPPLAL 68
           S+N N   +AAA  ++  SSSSS +        SRYENQKRRDWNTF QYLRNHRPPL+L
Sbjct: 14  SHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSL 73

Query: 69  PMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRA 128
             CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRA
Sbjct: 74  SRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRA 133

Query: 129 AYEENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 168
           A+EENG  PE+NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP
Sbjct: 134 AFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of MS005254 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 234.6 bits (597), Expect = 6.4e-62
Identity = 112/144 (77.78%), Postives = 124/144 (86.11%), Query Frame = 0


Query: 25  PPSSSSSGATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTK 84
           P   SS  ATPSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTK
Sbjct: 19  PSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTK 78

Query: 85  VHNQNCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGFRPESNPFGARAVRLY 144
           VH   CP+FG   PP+PC CPL+QAWGSLDALIGRLRAAYEENG RP+SNPF ARAVR+Y
Sbjct: 79  VHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIY 138

Query: 145 LREVRDFQAKARGVSYE-KKRKRP 168
           LREVR+ QAKARG+ YE KKRKRP
Sbjct: 139 LREVRESQAKARGIPYEKKKRKRP 162

The following BLAST results are available for this feature:

BLAST of MS005254 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143023.1	1.8e-98	99.45	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Momordica charantia]	[more]
XP_022965962.1	3.4e-81	84.74	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima]	[more]
XP_023538298.1	5.8e-81	84.74	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938293.1	5.8e-81	84.74	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata] >KAG7021182...	[more]
KAG6586335.1	9.8e-81	84.04	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subs...	[more]

BLAST of MS005254 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNI3	1.8e-69	75.84	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9M836	1.2e-68	72.73	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q7XDD0	7.9e-65	75.00	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
O82268	1.0e-64	74.71	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XVI8	1.8e-64	74.39	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]

BLAST of MS005254 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPQ1	8.6e-99	99.45	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Momordica charantia OX=3673 G...	[more]
A0A6J1HLQ5	1.6e-81	84.74	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FIH1	2.8e-81	84.74	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5D3BFP5	1.1e-77	83.62	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C396	1.1e-77	83.62	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of MS005254 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28490.1	1.3e-70	75.84	Protein of unknown function (DUF640)	[more]
AT3G04510.1	8.3e-70	72.73	Protein of unknown function (DUF640)	[more]
AT2G31160.1	7.3e-66	74.71	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.1e-64	77.11	Protein of unknown function (DUF640)	[more]
AT1G07090.1	6.4e-62	77.78	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 29..150 e-value: 6.4E-65 score: 217.0
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 37..164 score: 83.677757
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR31165:SF15	PROTEIN G1-LIKE5	coord: 2..174
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 2..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005254.1	MS005254.1	mRNA