MS005233 (gene) Bitter gourd (TR) v1

Overview
NameMS005233
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S11-like
Locationscaffold83: 184165 .. 184696 (-)
RNA-Seq ExpressionMS005233
SyntenyMS005233
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAACATACATTGATAAGAAATGCCCCTTCACTGGAACTGTTTCTATTAGGGGCCGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTACCTTTCTCACTTCCCCCTACTACTGCCTACACTCCATATTTCTCTTCGCAAAAGAACATATAACATCATGGTTCTCTGACTTCTTTTGTTCATTCTGTCTCCTTCAGGTATGAGAAAAGGCACTCCAATATTCCTGCTCACATATCTCCTTGCTTCCGTGTCAAGGAGGGCGATCATGTTATTATTGGCCAATGCAGGTACATCAAGATATGAATAATTCTCCACCTTGATTATTGTTGTGATAGTTTTTGGATTTTAAGAAAACTTGTGTCATATTTTATCATTCAAATTTCAGGCCATTGTCAAAGACAGTGAGGTTCAATGTGTTAAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCTGGAATT

mRNA sequence

GGAACATACATTGATAAGAAATGCCCCTTCACTGGAACTGTTTCTATTAGGGGCCGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAATATTCCTGCTCACATATCTCCTTGCTTCCGTGTCAAGGAGGGCGATCATGTTATTATTGGCCAATGCAGGCCATTGTCAAAGACAGTGAGGTTCAATGTGTTAAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCTGGAATT

Coding sequence (CDS)

GGAACATACATTGATAAGAAATGCCCCTTCACTGGAACTGTTTCTATTAGGGGCCGTATTTTAGCTGGAACTTGTCATAGTGCTAAGATGGTCAGGACCATTATTGTCAGGAGGAACTATCTACACTATGTTAAGAAGTATCAGAGGTATGAGAAAAGGCACTCCAATATTCCTGCTCACATATCTCCTTGCTTCCGTGTCAAGGAGGGCGATCATGTTATTATTGGCCAATGCAGGCCATTGTCAAAGACAGTGAGGTTCAATGTGTTAAAGGTCATTCCTGCTGGATCCTCAAGTCGTGGGAAGAAGGCTTTTGCTGGAATT

Protein sequence

GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Homology
[Close]
BLAST of MS005233 vs. NCBI nr
Match: XP_022143218.1 (40S ribosomal protein S11-like [Momordica charantia])

HSP 1 Score: 224.6 bits (571), Expect = 4.2e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of MS005233 vs. NCBI nr
Match: XP_038887258.1 (40S ribosomal protein S11-like [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 4.2e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of MS005233 vs. NCBI nr
Match: XP_008447825.1 (PREDICTED: 40S ribosomal protein S11-like [Cucumis melo] >TYK23274.1 40S ribosomal protein S11-like [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPF GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of MS005233 vs. NCBI nr
Match: XP_004153463.1 (40S ribosomal protein S11 [Cucumis sativus] >KGN43351.1 hypothetical protein Csa_020478 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 1.6e-54
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPF GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of MS005233 vs. NCBI nr
Match: XP_022952178.1 (40S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosomal protein S11-like [Cucurbita maxima] >KAG7011817.1 40S ribosomal protein S11-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.2 bits (565), Expect = 2.1e-54
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]
BLAST of MS005233 vs. ExPASy Swiss-Prot
Match: P42733 (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 209.1 bits (531), Expect = 2.4e-53
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           +SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 112 VSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of MS005233 vs. ExPASy Swiss-Prot
Match: P25460 (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.1e-53
Identity = 98/105 (93.33%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAF 106
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS++ GKKAF
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAF 156

[Close]
BLAST of MS005233 vs. ExPASy Swiss-Prot
Match: Q9M5M1 (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 5.4e-53
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           +SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS   KKAF  I
Sbjct: 112 VSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]
BLAST of MS005233 vs. ExPASy Swiss-Prot
Match: P17093 (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-52
Identity = 99/108 (91.67%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSS  KKAF G+
Sbjct: 112 ISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]
BLAST of MS005233 vs. ExPASy Swiss-Prot
Match: P16181 (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.0e-52
Identity = 98/109 (89.91%), Postives = 104/109 (95.41%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR-GKKAFAGI 109
           +SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSSS  GKKAF G+
Sbjct: 112 VSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of MS005233 vs. ExPASy TrEMBL
Match: A0A6J1CQ61 (40S ribosomal protein S11-like OS=Momordica charantia OX=3673 GN=LOC111013135 PE=3 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.0e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of MS005233 vs. ExPASy TrEMBL
Match: A0A5D3DI18 (40S ribosomal protein S11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003300 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.8e-55
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPF GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of MS005233 vs. ExPASy TrEMBL
Match: A0A0A0K691 (Ribosomal_S17_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025720 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.8e-55
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPF GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of MS005233 vs. ExPASy TrEMBL
Match: A0A1S3BHR3 (40S ribosomal protein S11-like OS=Cucumis melo OX=3656 GN=LOC103490202 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.8e-55
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPF GTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFAGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 159

[Close]
BLAST of MS005233 vs. ExPASy TrEMBL
Match: A0A6J1HZI1 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.0e-54
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH
Sbjct: 52  GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSS GKKAFAGI
Sbjct: 112 ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSSGKKAFAGI 159

[Close]
BLAST of MS005233 vs. TAIR 10
Match: AT5G23740.1 (ribosomal protein S11-beta )

HSP 1 Score: 209.1 bits (531), Expect = 1.7e-54
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           +SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S+ GKKAF G+
Sbjct: 112 VSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]
BLAST of MS005233 vs. TAIR 10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 206.1 bits (523), Expect = 1.5e-53
Identity = 98/109 (89.91%), Postives = 104/109 (95.41%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH
Sbjct: 52  GAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSR-GKKAFAGI 109
           +SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSSS  GKKAF G+
Sbjct: 112 VSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]
BLAST of MS005233 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 203.4 bits (516), Expect = 9.4e-53
Identity = 96/108 (88.89%), Postives = 103/108 (95.37%), Query Frame = 0 

Query: 1   GTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAH 60
           GTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH
Sbjct: 52  GTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAH 111

Query: 61  ISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSRGKKAFAGI 109
           +SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIPAGSSS GKKAF G+
Sbjct: 112 VSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

The following BLAST results are available for this feature:
BLAST of MS005233 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143218.14.2e-55100.0040S ribosomal protein S11-like [Momordica charantia][more]
XP_038887258.14.2e-55100.0040S ribosomal protein S11-like [Benincasa hispida][more]
XP_008447825.11.6e-5499.07PREDICTED: 40S ribosomal protein S11-like [Cucumis melo] >TYK23274.1 40S ribosom... [more]
XP_004153463.11.6e-5499.0740S ribosomal protein S11 [Cucumis sativus] >KGN43351.1 hypothetical protein Csa... [more]
XP_022952178.12.1e-5499.0740S ribosomal protein S11-like [Cucurbita moschata] >XP_022969280.1 40S ribosoma... [more]
BLAST of MS005233 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P427332.4e-5390.7440S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2[more]
P254604.1e-5393.3340S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1[more]
Q9M5M15.4e-5391.6740S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1[more]
P170931.2e-5291.6740S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2[more]
P161812.0e-5289.9140S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1[more]
BLAST of MS005233 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CQ612.0e-55100.0040S ribosomal protein S11-like OS=Momordica charantia OX=3673 GN=LOC111013135 PE... [more]
A0A5D3DI187.8e-5599.0740S ribosomal protein S11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0K6917.8e-5599.07Ribosomal_S17_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G02... [more]
A0A1S3BHR37.8e-5599.0740S ribosomal protein S11-like OS=Cucumis melo OX=3656 GN=LOC103490202 PE=3 SV=1[more]
A0A6J1HZI11.0e-5499.0740S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111468334 PE=3 ... [more]
BLAST of MS005233 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G23740.11.7e-5490.74ribosomal protein S11-beta [more]
AT3G48930.11.5e-5389.91Nucleic acid-binding, OB-fold-like protein [more]
AT4G30800.19.4e-5388.89Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 37..60
score: 37.33
coord: 70..80
score: 60.91
coord: 80..87
score: 73.25
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 23..91
e-value: 2.6E-26
score: 91.5
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 1..107
IPR028333Ribosomal protein S17, archaeal/eukaryoticTIGRFAMTIGR03630TIGR03630coord: 5..92
e-value: 1.3E-33
score: 113.0
IPR03244040S ribosomal protein S11, N-terminalPFAMPF16205Ribosomal_S17_Ncoord: 1..21
e-value: 7.4E-11
score: 42.3
NoneNo IPR availableGENE3D2.40.50.1000coord: 1..107
e-value: 2.1E-60
score: 205.1
NoneNo IPR availablePANTHERPTHR10744:SF37BNAA06G38660D PROTEINcoord: 1..107
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 70..82
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 17..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005233.1MS005233.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome