MS005230 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGGAATGTTGCCGGGAGTCGAATGCGCGAGAAGGCGGCGGTTCCACCAGAGCATAACCTCGTCGGACTCGCCGTCCACGGCGGCGAAACTGGGATCCACCAGAAGGCCCTCCTTCTGTTTGTACACCAGCAACCGCGATTTCCACCTCACTTCATCTTCTACACAGGTAAAGAAAAAAAATCTACATACAATTAAATTCCATCCACATCCTTGTTCCAATTATCTGTTTGTTTCCTGAGAAAAATCTGGTGAATGATTTTCAAATTTAAACAAAAATTAAGCAACGTAGCTGGTCGAATCAAGCTTTCCAGAACGATAAACTGGGTGAAATTGCGAGAGAAGCCAAAGAGAGGTTGGATGAGAGGTTGAAGACACGCAGAAAACCAGAGACTGAAACTGTAAGGTAATTTCTCCTCGGTGAGCTATTTTTCTCTCTCTCTCTTTTTTGTTTCATTGAGAATTTTATTGATTATCATTAAAAATTAAAAGCGTCTCGCGGATAATAAATAATCTCTATGCTTATGCTTAATATCATAAATAATAGTTACATGTATAAAAAGATTTAAGTACCATTAATTTTTTAAAATAATCATCCAAGTGTTAATTGAATGATTAATGAGAATGTGAGTAATTTTTACGGTTTTGGTCTATGTCAAAATCACTCTCAAAGACACCCCGAGTAAAATTGCACAATTATTTCACAAAATTTTGTAAGGTTTGTCTTTTATTTGGGTATTTAGTCAACTATATTAATATGTTAGGTTGAGTAAAAATTAAAAGGACTATAAGACTAAACTTGTAATTTACTTAAAATATTTTAGGTTAAGCTATTAGTTTAGTCTCTAAATTTTCAAGATTGTTTTTAATGCGTCCTTAAATTTAAAAAAAAAAAATCTAATAAGTTGCTAGATCTTCAACTTTGTGTCAAATACTTATTAGACATAAAACTAAAATAATGATATTAAGGTATCAATAAGTAGGTATTTCGTGATACTAGAAGAGTACAAATACTTTTTTCGTTTATTGTCAACCATGTTAGTATTGTATTAAAAATAATGTAAGGTCCGGTAACAAACAAAATCATAGTGTGAATAGAGAGAATATAGCACCGCATAGTACTATCCGTTAAAGCACCTAAGCTTAGGTATGCATTTGATGGAATTTTGAAAGTTTTATAACTTGATATGGTACAATTATAGGAAGAGTAGGAGTAAGAGGGAAGAAGAAGTAAGGTCAAAAGGGTCAGAAAAGGAAGGGGAAATGACAAAAGGCAAAGAAGACGAGAGAAAGAAGAAGTTGATGAGTTGGGGAAAGTGGAAGGCGTGGGAGCAAAAGGAGTGCGCCGTTTGCCTAGAAGGGTTCAGGGGTGGCGAGCCGGTGGTCCATCTGCCATGCGCCCACAAGTTCCATTCCTCCTGCCTCGTCCCTTGGCTCCAAACCAACTCCCATTGCCCTTCTTGCAGATTCCCCATTTCCGCTCCT ATGGCGGGAATGTTGCCGGGAGTCGAATGCGCGAGAAGGCGGCGGTTCCACCAGAGCATAACCTCGTCGGACTCGCCGTCCACGGCGGCGAAACTGGGATCCACCAGAAGGCCCTCCTTCTGTTTGTACACCAGCAACCGCGATTTCCACCTCACTTCATCTTCTACACAGCAACGTAGCTGGTCGAATCAAGCTTTCCAGAACGATAAACTGGGTGAAATTGCGAGAGAAGCCAAAGAGAGGTTGGATGAGAGGTTGAAGACACGCAGAAAACCAGAGACTGAAACTGTAAGTAAGAGGGAAGAAGAAGTAAGGTCAAAAGGGTCAGAAAAGGAAGGGGAAATGACAAAAGGCAAAGAAGACGAGAGAAAGAAGAAGTTGATGAGTTGGGGAAAGTGGAAGGCGTGGGAGCAAAAGGAGTGCGCCGTTTGCCTAGAAGGGTTCAGGGGTGGCGAGCCGGTGGTCCATCTGCCATGCGCCCACAAGTTCCATTCCTCCTGCCTCGTCCCTTGGCTCCAAACCAACTCCCATTGCCCTTCTTGCAGATTCCCCATTTCCGCTCCT ATGGCGGGAATGTTGCCGGGAGTCGAATGCGCGAGAAGGCGGCGGTTCCACCAGAGCATAACCTCGTCGGACTCGCCGTCCACGGCGGCGAAACTGGGATCCACCAGAAGGCCCTCCTTCTGTTTGTACACCAGCAACCGCGATTTCCACCTCACTTCATCTTCTACACAGCAACGTAGCTGGTCGAATCAAGCTTTCCAGAACGATAAACTGGGTGAAATTGCGAGAGAAGCCAAAGAGAGGTTGGATGAGAGGTTGAAGACACGCAGAAAACCAGAGACTGAAACTGTAAGTAAGAGGGAAGAAGAAGTAAGGTCAAAAGGGTCAGAAAAGGAAGGGGAAATGACAAAAGGCAAAGAAGACGAGAGAAAGAAGAAGTTGATGAGTTGGGGAAAGTGGAAGGCGTGGGAGCAAAAGGAGTGCGCCGTTTGCCTAGAAGGGTTCAGGGGTGGCGAGCCGGTGGTCCATCTGCCATGCGCCCACAAGTTCCATTCCTCCTGCCTCGTCCCTTGGCTCCAAACCAACTCCCATTGCCCTTCTTGCAGATTCCCCATTTCCGCTCCT MAGMLPGVECARRRRFHQSITSSDSPSTAAKLGSTRRPSFCLYTSNRDFHLTSSSTQQRSWSNQAFQNDKLGEIAREAKERLDERLKTRRKPETETVSKREEEVRSKGSEKEGEMTKGKEDERKKKLMSWGKWKAWEQKECAVCLEGFRGGEPVVHLPCAHKFHSSCLVPWLQTNSHCPSCRFPISAP Homology
BLAST of MS005230 vs. NCBI nr
Match: XP_022143236.1 (E3 ubiquitin-protein ligase EL5 [Momordica charantia]) HSP 1 Score: 368.2 bits (944), Expect = 4.1e-98 Identity = 186/192 (96.88%), Postives = 188/192 (97.92%), Query Frame = 0
BLAST of MS005230 vs. NCBI nr
Match: XP_004139268.1 (probable E3 ubiquitin-protein ligase RHY1A [Cucumis sativus] >KGN60748.1 hypothetical protein Csa_019469 [Cucumis sativus]) HSP 1 Score: 266.5 bits (680), Expect = 1.7e-67 Identity = 143/200 (71.50%), Postives = 160/200 (80.00%), Query Frame = 0
BLAST of MS005230 vs. NCBI nr
Match: KAG7030344.1 (putative E3 ubiquitin-protein ligase RHY1A, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 265.4 bits (677), Expect = 3.8e-67 Identity = 140/189 (74.07%), Postives = 158/189 (83.60%), Query Frame = 0
BLAST of MS005230 vs. NCBI nr
Match: XP_022965966.1 (probable E3 ubiquitin-protein ligase RHY1A isoform X1 [Cucurbita maxima] >XP_022965967.1 probable E3 ubiquitin-protein ligase RHY1A isoform X1 [Cucurbita maxima] >XP_022965968.1 probable E3 ubiquitin-protein ligase RHY1A isoform X1 [Cucurbita maxima]) HSP 1 Score: 261.5 bits (667), Expect = 5.4e-66 Identity = 138/190 (72.63%), Postives = 149/190 (78.42%), Query Frame = 0
BLAST of MS005230 vs. NCBI nr
Match: XP_038891102.1 (probable E3 ubiquitin-protein ligase RHY1A [Benincasa hispida]) HSP 1 Score: 260.8 bits (665), Expect = 9.3e-66 Identity = 145/195 (74.36%), Postives = 156/195 (80.00%), Query Frame = 0
BLAST of MS005230 vs. ExPASy Swiss-Prot
Match: Q852U6 (Probable E3 ubiquitin-protein ligase RHY1A OS=Arabidopsis thaliana OX=3702 GN=RHY1A PE=1 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10 Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of MS005230 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 4.4e-10 Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 0
BLAST of MS005230 vs. ExPASy Swiss-Prot
Match: Q9C1X4 (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAP32A8.03c PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 2.2e-09 Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 0
BLAST of MS005230 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 6.3e-09 Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 0
BLAST of MS005230 vs. ExPASy Swiss-Prot
Match: Q91YL2 (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.1e-08 Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 0
BLAST of MS005230 vs. ExPASy TrEMBL
Match: A0A6J1CPN1 (E3 ubiquitin-protein ligase EL5 OS=Momordica charantia OX=3673 GN=LOC111013152 PE=4 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 2.0e-98 Identity = 186/192 (96.88%), Postives = 188/192 (97.92%), Query Frame = 0
BLAST of MS005230 vs. ExPASy TrEMBL
Match: A0A0A0LG47 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009360 PE=4 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 8.2e-68 Identity = 143/200 (71.50%), Postives = 160/200 (80.00%), Query Frame = 0
BLAST of MS005230 vs. ExPASy TrEMBL
Match: A0A6J1HQI5 (probable E3 ubiquitin-protein ligase RHY1A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465688 PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 2.6e-66 Identity = 138/190 (72.63%), Postives = 149/190 (78.42%), Query Frame = 0
BLAST of MS005230 vs. ExPASy TrEMBL
Match: A0A6J1G4D6 (probable E3 ubiquitin-protein ligase RHY1A OS=Cucurbita moschata OX=3662 GN=LOC111450678 PE=4 SV=1) HSP 1 Score: 259.6 bits (662), Expect = 1.0e-65 Identity = 139/189 (73.54%), Postives = 153/189 (80.95%), Query Frame = 0
BLAST of MS005230 vs. ExPASy TrEMBL
Match: A0A1S3C563 (RING-H2 finger protein ATL16 OS=Cucumis melo OX=3656 GN=LOC103496570 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 5.5e-64 Identity = 137/195 (70.26%), Postives = 154/195 (78.97%), Query Frame = 0
BLAST of MS005230 vs. TAIR 10
Match: AT2G15580.1 (RING/U-box superfamily protein ) HSP 1 Score: 144.1 bits (362), Expect = 1.2e-34 Identity = 94/196 (47.96%), Postives = 121/196 (61.73%), Query Frame = 0
BLAST of MS005230 vs. TAIR 10
Match: AT2G15580.2 (RING/U-box superfamily protein ) HSP 1 Score: 72.0 bits (175), Expect = 5.7e-13 Identity = 54/123 (43.90%), Postives = 75/123 (60.98%), Query Frame = 0
BLAST of MS005230 vs. TAIR 10
Match: AT1G49850.1 (RING/U-box superfamily protein ) HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11 Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0
BLAST of MS005230 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 66.2 bits (160), Expect = 3.1e-11 Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 0
BLAST of MS005230 vs. TAIR 10
Match: AT3G58720.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.9 bits (159), Expect = 4.1e-11 Identity = 31/71 (43.66%), Postives = 39/71 (54.93%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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