MS005189 (gene) Bitter gourd (TR) v1

Overview


Name	MS005189
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold176: 3365216 .. 3365455 (-)
RNA-Seq Expression	MS005189
Synteny	MS005189

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAACAAACCGGTGAAGCAACAAGAAGTACAAAGGGAAGAAATCTTCTTGAAGATAGTGCCTCCTTTGGACCAAGCCTATGTTAGGTGGCTTGCTCGGGATCTCGAGAGGATTCATGGCTTCACTCCAAGAAATCCCCGCGCCGTGAAGCCTCCAGATCACTATATAGAGTTCATGCGCTTGAATGGATGGTTGGATGTGAGTTTAGATGACCCAGATCTCGCACATTTATTCAAA

mRNA sequence

ATGGGAAACAAACCGGTGAAGCAACAAGAAGTACAAAGGGAAGAAATCTTCTTGAAGATAGTGCCTCCTTTGGACCAAGCCTATGTTAGGTGGCTTGCTCGGGATCTCGAGAGGATTCATGGCTTCACTCCAAGAAATCCCCGCGCCGTGAAGCCTCCAGATCACTATATAGAGTTCATGCGCTTGAATGGATGGTTGGATGTGAGTTTAGATGACCCAGATCTCGCACATTTATTCAAA

Coding sequence (CDS)

ATGGGAAACAAACCGGTGAAGCAACAAGAAGTACAAAGGGAAGAAATCTTCTTGAAGATAGTGCCTCCTTTGGACCAAGCCTATGTTAGGTGGCTTGCTCGGGATCTCGAGAGGATTCATGGCTTCACTCCAAGAAATCCCCGCGCCGTGAAGCCTCCAGATCACTATATAGAGTTCATGCGCTTGAATGGATGGTTGGATGTGAGTTTAGATGACCCAGATCTCGCACATTTATTCAAA

Protein sequence

MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLAHLFK

Homology

[Close]

BLAST of MS005189 vs. NCBI nr
Match: XP_022152955.1 (uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncharacterized protein LOC111020571 [Momordica charantia])

HSP 1 Score: 174.9 bits (442), Expect = 2.8e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLAHLFK 81
          RLNGWLDVSLDDPDLAHLFK
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]

BLAST of MS005189 vs. NCBI nr
Match: XP_038901668.1 (uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901671.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901672.1 uncharacterized protein LOC120088440 [Benincasa hispida])

HSP 1 Score: 161.0 bits (406), Expect = 4.3e-36
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGN+ VKQ + QR EIFLKIVPPLDQAY+RWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1  MGNRAVKQPQEQRGEIFLKIVPPLDQAYLRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLAHLFK 81
          RLNGWLDVSLDDPDLAHLFK
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]

BLAST of MS005189 vs. NCBI nr
Match: XP_021278844.1 (uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao] >EOY33334.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao])

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGNKPVKQ+  QREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M
Sbjct: 1  MGNKPVKQE--QREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 60

Query: 61 RLNGWLDVSLDDPDLAHLFK 81
          RLNGWLDV LDDPDLAHLFK
Sbjct: 61 RLNGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of MS005189 vs. NCBI nr
Match: XP_017982294.1 (PREDICTED: uncharacterized protein LOC18589038 [Theobroma cacao])

HSP 1 Score: 157.1 bits (396), Expect = 6.1e-35
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGNKPVKQ+  QREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M
Sbjct: 1  MGNKPVKQE--QREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 60

Query: 61 RLNGWLDVSLDDPDLAHLF 80
          RLNGWLDV LDDPDLAHLF
Sbjct: 61 RLNGWLDVKLDDPDLAHLF 77

[Close]

BLAST of MS005189 vs. NCBI nr
Match: EOY31525.1 (Uncharacterized protein TCM_038446 [Theobroma cacao])

HSP 1 Score: 157.1 bits (396), Expect = 6.1e-35
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
           MGNKPVKQ+  QREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M
Sbjct: 67  MGNKPVKQE--QREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 126

Query: 61  RLNGWLDVSLDDPDLAHLF 80
           RLNGWLDV LDDPDLAHLF
Sbjct: 127 RLNGWLDVKLDDPDLAHLF 143

[Close]

BLAST of MS005189 vs. ExPASy TrEMBL
Match: A0A6J1DJ99 (uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020571 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-40
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLAHLFK 81
          RLNGWLDVSLDDPDLAHLFK
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]

BLAST of MS005189 vs. ExPASy TrEMBL
Match: A0A061GZN3 (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.0e-36
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGNKPVKQ+  QREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M
Sbjct: 1  MGNKPVKQE--QREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 60

Query: 61 RLNGWLDVSLDDPDLAHLFK 81
          RLNGWLDV LDDPDLAHLFK
Sbjct: 61 RLNGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of MS005189 vs. ExPASy TrEMBL
Match: A0A6J0ZWT3 (uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC110412594 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.0e-36
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGNKPVKQ+  QREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M
Sbjct: 1  MGNKPVKQE--QREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 60

Query: 61 RLNGWLDVSLDDPDLAHLFK 81
          RLNGWLDV LDDPDLAHLFK
Sbjct: 61 RLNGWLDVDLDDPDLAHLFK 78

[Close]

BLAST of MS005189 vs. ExPASy TrEMBL
Match: A0A061GNT1 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038446 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.0e-35
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1   MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
           MGNKPVKQ+  QREEI LKIVPPLDQAYVRWLARD+ERIHGFTPRNPRAVKPPDHYIE+M
Sbjct: 67  MGNKPVKQE--QREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 126

Query: 61  RLNGWLDVSLDDPDLAHLF 80
           RLNGWLDV LDDPDLAHLF
Sbjct: 127 RLNGWLDVKLDDPDLAHLF 143

[Close]

BLAST of MS005189 vs. ExPASy TrEMBL
Match: A0A438DCX1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_085320 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 6.6e-35
Identity = 70/80 (87.50%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60
          MGNKPVK+   ++EEIFLKIVPPLD+AYVRWLARDLERIHGFTP+NPRAVKPPDHYIE+M
Sbjct: 1  MGNKPVKE---EKEEIFLKIVPPLDRAYVRWLARDLERIHGFTPKNPRAVKPPDHYIEYM 60

Query: 61 RLNGWLDVSLDDPDLAHLFK 81
          RLNGWLDV+LDDPDLAHLFK
Sbjct: 61 RLNGWLDVNLDDPDLAHLFK 77

[Close]

BLAST of MS005189 vs. TAIR 10
Match: AT5G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-28
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPR-NPRAVKPPDHYIEF 60
          MGNK    +E +REEI LKIVPPLD+ ++RWLARDL+R+HGF P+ N RA+ PPD YIEF
Sbjct: 1  MGNKATTVKE-EREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEF 60

Query: 61 MRLNGWLDVSLDDPDLAHLFK 81
          MRLNG LDV LDDPDLAHLFK
Sbjct: 61 MRLNGSLDVDLDDPDLAHLFK 80

[Close]

BLAST of MS005189 vs. TAIR 10
Match: AT5G22210.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-28
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 0


Query: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPR-NPRAVKPPDHYIEF 60
          MGNK    +E +REEI LKIVPPLD+ ++RWLARDL+R+HGF P+ N RA+ PPD YIEF
Sbjct: 1  MGNKATTVKE-EREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEF 60

Query: 61 MRLNGWLDVSLDDPDLAHLFK 81
          MRLNG LDV LDDPDLAHLFK
Sbjct: 61 MRLNGSLDVDLDDPDLAHLFK 80

The following BLAST results are available for this feature:

BLAST of MS005189 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152955.1	2.8e-40	100.00	uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncha...	[more]
XP_038901668.1	4.3e-36	91.25	uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 unchara...	[more]
XP_021278844.1	1.2e-35	91.25	uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacte...	[more]
XP_017982294.1	6.1e-35	91.14	PREDICTED: uncharacterized protein LOC18589038 [Theobroma cacao]	[more]
EOY31525.1	6.1e-35	91.14	Uncharacterized protein TCM_038446 [Theobroma cacao]	[more]

BLAST of MS005189 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS005189 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJ99	1.4e-40	100.00	uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A061GZN3	6.0e-36	91.25	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 ...	[more]
A0A6J0ZWT3	6.0e-36	91.25	uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A061GNT1	3.0e-35	91.14	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_038446 PE=4 SV=1	[more]
A0A438DCX1	6.6e-35	87.50	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_085320 PE=4 SV=1	[more]

BLAST of MS005189 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22210.1	2.0e-28	71.60	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT5G22210.2	2.0e-28	71.60	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005189.1	MS005189.1	mRNA