MS005153 (gene) Bitter gourd (TR) v1

Overview


Name	MS005153
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cytochrome-c oxidases;electron carriers
Location	scaffold176: 3079476 .. 3079776 (-)
RNA-Seq Expression	MS005153
Synteny	MS005153

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAGGATGACTGAAGAACCATTTAGGCCTCGTGAGAAACTTATTGAAAGACAAAAGTATTTCCAGAGCATCCACAAGCACACATATCTCAAAGGGCCATTAGATAAGGTCACCTCTGTTGCCATTCCAATTGCTTTTGCAGCCTCATCATTGTATCTTATAGTAAGTTAATTTCTCTCCAGTGCAGTTGATGATTTCCTCCTGTTTAGTTGTCTAGCATTATGAATAATGTTGGTCTCACTCCTGTTTCATGCAGGGACGGGGAATTTATAACATGTCGCACGGCATTGGAAAGAAAGAA

mRNA sequence

TGTAGGATGACTGAAGAACCATTTAGGCCTCGTGAGAAACTTATTGAAAGACAAAAGTATTTCCAGAGCATCCACAAGCACACATATCTCAAAGGGCCATTAGATAAGGTCACCTCTGTTGCCATTCCAATTGCTTTTGCAGCCTCATCATTGTATCTTATAGGACGGGGAATTTATAACATGTCGCACGGCATTGGAAAGAAAGAA

Coding sequence (CDS)

TGTAGGATGACTGAAGAACCATTTAGGCCTCGTGAGAAACTTATTGAAAGACAAAAGTATTTCCAGAGCATCCACAAGCACACATATCTCAAAGGGCCATTAGATAAGGTCACCTCTGTTGCCATTCCAATTGCTTTTGCAGCCTCATCATTGTATCTTATAGGACGGGGAATTTATAACATGTCGCACGGCATTGGAAAGAAAGAA

Protein sequence

CRMTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMSHGIGKKE

Homology

[Close]

BLAST of MS005153 vs. NCBI nr
Match: XP_022140780.1 (uncharacterized protein LOC111011360 [Momordica charantia])

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
          MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS
Sbjct: 9  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 68

Query: 63 HGIGKKE 70
          HGIGKKE
Sbjct: 69 HGIGKKE 75

[Close]

BLAST of MS005153 vs. NCBI nr
Match: XP_022957674.1 (uncharacterized protein LOC111459140 isoform X1 [Cucurbita moschata] >XP_022996284.1 uncharacterized protein LOC111491558 isoform X1 [Cucurbita maxima])

HSP 1 Score: 133.7 bits (335), Expect = 6.3e-28
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
          MTE+PFRPREKLIERQKYFQSIHKHTYLKGP+DK+TSVAIPIA AASSLYLIGRGIYNMS
Sbjct: 3  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 63 HGIGKKE 70
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of MS005153 vs. NCBI nr
Match: KAG6606001.1 (hypothetical protein SDJN03_03318, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 6.3e-28
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 3   MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
           MTE+PFRPREKLIERQKYFQSIHKHTYLKGP+DK+TSVAIPIA AASSLYLIGRGIYNMS
Sbjct: 55  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 114

Query: 63  HGIGKKE 70
           HGIGKKE
Sbjct: 115 HGIGKKE 121

[Close]

BLAST of MS005153 vs. NCBI nr
Match: XP_022957675.1 (uncharacterized protein LOC111459140 isoform X2 [Cucurbita moschata] >XP_022996285.1 uncharacterized protein LOC111491558 isoform X2 [Cucurbita maxima] >KAG7035951.1 hypothetical protein SDJN02_02751, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.7 bits (335), Expect = 6.3e-28
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
          MTE+PFRPREKLIERQKYFQSIHKHTYLKGP+DK+TSVAIPIA AASSLYLIGRGIYNMS
Sbjct: 1  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 63 HGIGKKE 70
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of MS005153 vs. NCBI nr
Match: XP_038900908.1 (uncharacterized protein LOC120087955 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 8.2e-28
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
          +TE+PFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIA AASSLYLIGRGIYNMS
Sbjct: 4  VTEQPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIALAASSLYLIGRGIYNMS 63

Query: 63 HGIGKKE 70
          HGIGKKE
Sbjct: 64 HGIGKKE 70

[Close]

BLAST of MS005153 vs. ExPASy TrEMBL
Match: A0A6J1CG46 (uncharacterized protein LOC111011360 OS=Momordica charantia OX=3673 GN=LOC111011360 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
          MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS
Sbjct: 9  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 68

Query: 63 HGIGKKE 70
          HGIGKKE
Sbjct: 69 HGIGKKE 75

[Close]

BLAST of MS005153 vs. ExPASy TrEMBL
Match: A0A6J1K6C6 (uncharacterized protein LOC111491558 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111491558 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
          MTE+PFRPREKLIERQKYFQSIHKHTYLKGP+DK+TSVAIPIA AASSLYLIGRGIYNMS
Sbjct: 1  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 63 HGIGKKE 70
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of MS005153 vs. ExPASy TrEMBL
Match: A0A6J1K8A8 (uncharacterized protein LOC111491558 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111491558 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
          MTE+PFRPREKLIERQKYFQSIHKHTYLKGP+DK+TSVAIPIA AASSLYLIGRGIYNMS
Sbjct: 3  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 63 HGIGKKE 70
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of MS005153 vs. ExPASy TrEMBL
Match: A0A6J1H2N1 (uncharacterized protein LOC111459140 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459140 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
          MTE+PFRPREKLIERQKYFQSIHKHTYLKGP+DK+TSVAIPIA AASSLYLIGRGIYNMS
Sbjct: 3  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 62

Query: 63 HGIGKKE 70
          HGIGKKE
Sbjct: 63 HGIGKKE 69

[Close]

BLAST of MS005153 vs. ExPASy TrEMBL
Match: A0A6J1H176 (uncharacterized protein LOC111459140 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459140 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 63/67 (94.03%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
          MTE+PFRPREKLIERQKYFQSIHKHTYLKGP+DK+TSVAIPIA AASSLYLIGRGIYNMS
Sbjct: 1  MTEQPFRPREKLIERQKYFQSIHKHTYLKGPMDKITSVAIPIALAASSLYLIGRGIYNMS 60

Query: 63 HGIGKKE 70
          HGIGKKE
Sbjct: 61 HGIGKKE 67

[Close]

BLAST of MS005153 vs. TAIR 10
Match: AT4G21105.1 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-26
Identity = 53/67 (79.10%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIPIAFAASSLYLIGRGIYNMS 62
          +TE PFRPREKL+E+Q+ FQSI +HTYLKGP+DK+TSVAIPIA AASSLY+IG GIYNMS
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSVAIPIALAASSLYMIGTGIYNMS 61

Query: 63 HGIGKKE 70
          +GIGKKE
Sbjct: 62 NGIGKKE 68

[Close]

BLAST of MS005153 vs. TAIR 10
Match: AT4G21105.2 (cytochrome-c oxidases;electron carriers )

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-12
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 3  MTEEPFRPREKLIERQKYFQSIHKHTYLKGPLDKVTSVAIP 44
          +TE PFRPREKL+E+Q+ FQSI +HTYLKGP+DK+TS+ IP
Sbjct: 2  LTETPFRPREKLLEKQRLFQSIQRHTYLKGPMDKITSLFIP 42

The following BLAST results are available for this feature:

BLAST of MS005153 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140780.1	2.5e-29	100.00	uncharacterized protein LOC111011360 [Momordica charantia]	[more]
XP_022957674.1	6.3e-28	94.03	uncharacterized protein LOC111459140 isoform X1 [Cucurbita moschata] >XP_0229962...	[more]
KAG6606001.1	6.3e-28	94.03	hypothetical protein SDJN03_03318, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022957675.1	6.3e-28	94.03	uncharacterized protein LOC111459140 isoform X2 [Cucurbita moschata] >XP_0229962...	[more]
XP_038900908.1	8.2e-28	95.52	uncharacterized protein LOC120087955 [Benincasa hispida]	[more]

BLAST of MS005153 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS005153 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG46	1.2e-29	100.00	uncharacterized protein LOC111011360 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1K6C6	3.0e-28	94.03	uncharacterized protein LOC111491558 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K8A8	3.0e-28	94.03	uncharacterized protein LOC111491558 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1H2N1	3.0e-28	94.03	uncharacterized protein LOC111459140 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1H176	3.0e-28	94.03	uncharacterized protein LOC111459140 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of MS005153 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21105.1	2.2e-26	79.10	cytochrome-c oxidases;electron carriers	[more]
AT4G21105.2	1.8e-12	70.73	cytochrome-c oxidases;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039297	Cytochrome c oxidase subunit VII	PFAM	PF02238	COX7a	coord: 12..64 e-value: 4.2E-15 score: 55.9
None	No IPR available	PANTHER	PTHR35308:SF10	BNAA03G58550D PROTEIN	coord: 2..69
IPR039296	Predicted cytochrome c oxidase subunit VII	PANTHER	PTHR35308	CYTOCHROME C OXIDASE SUBUNIT 7	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005153.1	MS005153.1	mRNA