MS005142 (gene) Bitter gourd (TR) v1

Overview


Name	MS005142
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	histone deacetylase HDT1-like
Location	scaffold176: 3003093 .. 3003534 (-)
RNA-Seq Expression	MS005142
Synteny	MS005142

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTTTGGATTTCAGGTGTTGAAGTTAAGCCTGGTCAGGCACTCGCCGTGAAGCCTGGAGATCAAAAATATTTGCATCTATCACAGGTAGGAACACTTGTCTTTTTTTCTTTTTTAATTTTGTAATTTTTGCCTAGACCACTGATTATCCTTGTTTAGTATCAACTCTTCCGGTGGTGATGAAAATGTTTTTATGCAGGCGACTCTAGGTGAAATAAAGAAGGACAAAGCTAATGAATCCGTGACTATTTTTCTGAAGATTGGTGACCAAAAGCTTGTTCTGGGAGTTCTCTCCGCTGAGAAGTTCCCGCAGCTATCATTTGATCTTGTGTTTGAGAAGGAATTTGAGCTCTCCCACAACGGGAAGAGTGGAAGTATTTACTGTTTGGGGTACCAGGCTTCTGCTGAGGACCAAGAACAATATCCTTCCTTTCCAATT

mRNA sequence

ATGTTTCTTTGGATTTCAGGTGTTGAAGTTAAGCCTGGTCAGGCACTCGCCGTGAAGCCTGGAGATCAAAAATATTTGCATCTATCACAGGCGACTCTAGGTGAAATAAAGAAGGACAAAGCTAATGAATCCGTGACTATTTTTCTGAAGATTGGTGACCAAAAGCTTGTTCTGGGAGTTCTCTCCGCTGAGAAGTTCCCGCAGCTATCATTTGATCTTGTGTTTGAGAAGGAATTTGAGCTCTCCCACAACGGGAAGAGTGGAAGTATTTACTGTTTGGGGTACCAGGCTTCTGCTGAGGACCAAGAACAATATCCTTCCTTTCCAATT

Coding sequence (CDS)

ATGTTTCTTTGGATTTCAGGTGTTGAAGTTAAGCCTGGTCAGGCACTCGCCGTGAAGCCTGGAGATCAAAAATATTTGCATCTATCACAGGCGACTCTAGGTGAAATAAAGAAGGACAAAGCTAATGAATCCGTGACTATTTTTCTGAAGATTGGTGACCAAAAGCTTGTTCTGGGAGTTCTCTCCGCTGAGAAGTTCCCGCAGCTATCATTTGATCTTGTGTTTGAGAAGGAATTTGAGCTCTCCCACAACGGGAAGAGTGGAAGTATTTACTGTTTGGGGTACCAGGCTTCTGCTGAGGACCAAGAACAATATCCTTCCTTTCCAATT

Protein sequence

MFLWISGVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQYPSFPI

Homology

[Close]

BLAST of MS005142 vs. NCBI nr
Match: XP_022140604.1 (histone deacetylase HDT1-like [Momordica charantia])

HSP 1 Score: 194.5 bits (493), Expect = 4.8e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF
Sbjct: 5   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Sbjct: 65  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 101

[Close]

BLAST of MS005142 vs. NCBI nr
Match: XP_022943360.1 (histone deacetylase HDT1-like [Cucurbita moschata])

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 92/97 (94.85%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVKPGQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKF
Sbjct: 5   GVEVKPGQALSVQPGDQKYLHLSQATLGELKKDKANESVTIFVKIGDQKLVLGILSAEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Sbjct: 65  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 101

[Close]

BLAST of MS005142 vs. NCBI nr
Match: XP_023513046.1 (histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 92/97 (94.85%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVKPGQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKF
Sbjct: 5   GVEVKPGQALSVQPGDQKYLHLSQATLGELKKDKANESVTIFVKIGDQKLVLGILSAEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Sbjct: 65  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 101

[Close]

BLAST of MS005142 vs. NCBI nr
Match: KAG6570843.1 (Histone deacetylase HDT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 92/97 (94.85%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVKPGQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKF
Sbjct: 5   GVEVKPGQALSVQPGDQKYLHLSQATLGELKKDKANESVTIFVKIGDQKLVLGILSAEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Sbjct: 65  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 101

[Close]

BLAST of MS005142 vs. NCBI nr
Match: XP_022986356.1 (histone deacetylase HDT1-like [Cucurbita maxima])

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 91/97 (93.81%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVK GQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKF
Sbjct: 5   GVEVKSGQALSVQPGDQKYLHLSQATLGELKKDKANESVTIFVKIGDQKLVLGILSAEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Sbjct: 65  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 101

[Close]

BLAST of MS005142 vs. ExPASy Swiss-Prot
Match: Q6V9I6 (Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-24
Identity = 57/98 (58.16%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           G EVK G+ L V+PGD   LHLSQA+LGE+KKDK +ESV + + I  +KLVLG L++EK 
Sbjct: 5   GAEVKSGEPLTVQPGDGMVLHLSQASLGELKKDK-SESVCLSVNIDGKKLVLGTLNSEKV 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQ 105
           PQ  FDLVF+++FELSHN KSGS+Y  GY+A+   +E+
Sbjct: 65  PQQQFDLVFDRDFELSHNLKSGSVYFFGYKATNPFEEE 101

[Close]

BLAST of MS005142 vs. ExPASy Swiss-Prot
Match: Q8LJS2 (Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.2e-21
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 7  GVEVKPGQALAVKPGD--QKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAE 66
          GVEVK GQ + V P D    Y+H+SQ  LGE KKDK NE V ++LK+G+QK+VLG LS +
Sbjct: 5  GVEVKVGQTVTVDPMDPVDSYIHISQVALGEAKKDKPNEPVVLYLKVGEQKIVLGTLSRD 64

Query: 67 KFPQLSFDLVFEKEFELSHNGKSGSIYCLGYQ 97
            P LS DLV + + ELSH  KS S++  GY+
Sbjct: 65 GIPHLSLDLVLDSDSELSHTSKSASVFFCGYK 96

[Close]

BLAST of MS005142 vs. ExPASy Swiss-Prot
Match: Q9M4U5 (Histone deacetylase HDT2 OS=Zea mays OX=4577 GN=HDT2 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-20
Identity = 49/115 (42.61%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           G+EVKPG  +  +PG    LH+SQA LGE KK   ++S  +++K+ D+KL +G LS +K+
Sbjct: 5   GLEVKPGSTVKCEPGHGFILHVSQAALGESKK---SDSALMYVKVDDKKLAIGTLSIDKY 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQA-----------SAEDQEQYPSFPI 111
           PQ+ FDLVF KEFELSH  K+ S++  GY+             +ED+E+  + P+
Sbjct: 65  PQIQFDLVFNKEFELSHTSKTTSVFFSGYKVEQPIEGDEMDLDSEDEEEELNIPV 116

[Close]

BLAST of MS005142 vs. ExPASy Swiss-Prot
Match: Q9FVE6 (Histone deacetylase HDT1 OS=Arabidopsis thaliana OX=3702 GN=HDT1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-19
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           G+EVK G+ + V P +   +H+SQA+LGE  K+K  E V + +K+G+Q LVLG LS E  
Sbjct: 5   GIEVKSGKPVTVTPEEGILIHVSQASLGEC-KNKKGEFVPLHVKVGNQNLVLGTLSTENI 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQA--------SAEDQEQYPSFP 110
           PQL  DLVF+KEFELSH    GS+Y +GY+         S E++E+    P
Sbjct: 65  PQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPNIEPQGYSEEEEEEEEEVP 114

[Close]

BLAST of MS005142 vs. ExPASy Swiss-Prot
Match: O24591 (Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-19
Identity = 46/97 (47.42%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           G+EVKPG  +  +PG    LHLSQA LGE KK   +++  +++KI DQKL +G LS +K 
Sbjct: 5   GLEVKPGSTVKCEPGYGFVLHLSQAALGESKK---SDNALMYVKIDDQKLAIGTLSVDKN 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           P + FDL+F+KEFELSH  K+ S++  GY+     +E
Sbjct: 65  PHIQFDLIFDKEFELSHTSKTTSVFFTGYKVEQPFEE 98

[Close]

BLAST of MS005142 vs. ExPASy TrEMBL
Match: A0A6J1CG52 (histone deacetylase HDT1-like OS=Momordica charantia OX=3673 GN=LOC111011215 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.3e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF
Sbjct: 5   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Sbjct: 65  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 101

[Close]

BLAST of MS005142 vs. ExPASy TrEMBL
Match: A0A6J1FXQ5 (histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448147 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 7.4e-45
Identity = 92/97 (94.85%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVKPGQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKF
Sbjct: 5   GVEVKPGQALSVQPGDQKYLHLSQATLGELKKDKANESVTIFVKIGDQKLVLGILSAEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Sbjct: 65  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 101

[Close]

BLAST of MS005142 vs. ExPASy TrEMBL
Match: A0A6J1JAV6 (histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484121 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 6.3e-44
Identity = 91/97 (93.81%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVK GQAL+V+PGDQKYLHLSQATLGE+KKDKANESVTIF+KIGDQKLVLG+LSAEKF
Sbjct: 5   GVEVKSGQALSVQPGDQKYLHLSQATLGELKKDKANESVTIFVKIGDQKLVLGILSAEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE
Sbjct: 65  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 101

[Close]

BLAST of MS005142 vs. ExPASy TrEMBL
Match: A0A6J1H533 (histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111459656 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.1e-43
Identity = 89/97 (91.75%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVKPGQAL+VKPGDQKYLHLSQATLGE+KKDK+ ESVTIFLKI +QKLVLG+LSAEKF
Sbjct: 5   GVEVKPGQALSVKPGDQKYLHLSQATLGELKKDKSKESVTIFLKIDEQKLVLGILSAEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           PQLSFDLVFEKEFELSHNGKSGSIYC+GYQASAEDQE
Sbjct: 65  PQLSFDLVFEKEFELSHNGKSGSIYCMGYQASAEDQE 101

[Close]

BLAST of MS005142 vs. ExPASy TrEMBL
Match: A0A6J1FU30 (histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448146 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.3e-41
Identity = 88/98 (89.80%), Postives = 92/98 (93.88%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVK G+ L VKPG QKYLHLSQATLGEIKKDKANE+VTIFLKIGDQKLVLG+LSAEKF
Sbjct: 5   GVEVKSGKPLVVKPGIQKYLHLSQATLGEIKKDKANENVTIFLKIGDQKLVLGILSAEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQ 105
           PQLSFDLVFEKEFELSHNGKSGS+YC GYQA AEDQEQ
Sbjct: 65  PQLSFDLVFEKEFELSHNGKSGSVYCAGYQAFAEDQEQ 102

[Close]

BLAST of MS005142 vs. TAIR 10
Match: AT3G44750.2 (histone deacetylase 3 )

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-20
Identity = 51/109 (46.79%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           G+EVK G+ + V P +   +H+SQA+LGE  K+K  E V + +K+G+Q LVLG LS E  
Sbjct: 5   GIEVKSGKPVTVTPEEGILIHVSQASLGEC-KNKKGEFVPLHVKVGNQNLVLGTLSTENI 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQA--------SAEDQEQYPS 108
           PQL  DLVF+KEFELSH    GS+Y +GY+         S E++E+ P+
Sbjct: 65  PQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPNIEPQGYSEEEEEEVPA 112

[Close]

BLAST of MS005142 vs. TAIR 10
Match: AT3G44750.1 (histone deacetylase 3 )

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-20
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           G+EVK G+ + V P +   +H+SQA+LGE  K+K  E V + +K+G+Q LVLG LS E  
Sbjct: 5   GIEVKSGKPVTVTPEEGILIHVSQASLGEC-KNKKGEFVPLHVKVGNQNLVLGTLSTENI 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQA--------SAEDQEQYPSFP 110
           PQL  DLVF+KEFELSH    GS+Y +GY+         S E++E+    P
Sbjct: 65  PQLFCDLVFDKEFELSHTWGKGSVYFVGYKTPNIEPQGYSEEEEEEEEEVP 114

[Close]

BLAST of MS005142 vs. TAIR 10
Match: AT5G03740.1 (histone deacetylase 2C )

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-19
Identity = 44/97 (45.36%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GVEVK G+ L + PG  + +H+SQ  LGE  K+   E + +++ +G  KL++G LS EKF
Sbjct: 5   GVEVKNGKPLHLDPGLDRLVHISQVALGE-SKNNVTEPIQLYVTVGSDKLLIGTLSHEKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQE 104
           PQLS ++V E+ F LSH  K+GS++  GY+  A D E
Sbjct: 65  PQLSTEIVLERNFALSHTWKNGSVFFSGYKVDASDPE 100

[Close]

BLAST of MS005142 vs. TAIR 10
Match: AT5G22650.1 (histone deacetylase 2B )

HSP 1 Score: 90.9 bits (224), Expect = 6.9e-19
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GV V P  A  V P +   +H+SQA+L      K+ ESV + + +G  KLV+G LS +KF
Sbjct: 5   GVAVTPKNATKVTPEEDSLVHISQASLD--CTVKSGESVVLSVTVGGAKLVIGTLSQDKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQYPS 108
           PQ+SFDLVF+KEFELSH+G   +++ +GY++   +Q+ + S
Sbjct: 65  PQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQDDFTS 103

[Close]

BLAST of MS005142 vs. TAIR 10
Match: AT5G22650.2 (histone deacetylase 2B )

HSP 1 Score: 90.9 bits (224), Expect = 6.9e-19
Identity = 45/101 (44.55%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 7   GVEVKPGQALAVKPGDQKYLHLSQATLGEIKKDKANESVTIFLKIGDQKLVLGVLSAEKF 66
           GV V P  A  V P +   +H+SQA+L      K+ ESV + + +G  KLV+G LS +KF
Sbjct: 5   GVAVTPKNATKVTPEEDSLVHISQASLD--CTVKSGESVVLSVTVGGAKLVIGTLSQDKF 64

Query: 67  PQLSFDLVFEKEFELSHNGKSGSIYCLGYQASAEDQEQYPS 108
           PQ+SFDLVF+KEFELSH+G   +++ +GY++   +Q+ + S
Sbjct: 65  PQISFDLVFDKEFELSHSGTKANVHFIGYKSPNIEQDDFTS 103

The following BLAST results are available for this feature:

BLAST of MS005142 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140604.1	4.8e-46	100.00	histone deacetylase HDT1-like [Momordica charantia]	[more]
XP_022943360.1	1.5e-44	94.85	histone deacetylase HDT1-like [Cucurbita moschata]	[more]
XP_023513046.1	1.5e-44	94.85	histone deacetylase HDT1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6570843.1	1.5e-44	94.85	Histone deacetylase HDT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022986356.1	1.3e-43	93.81	histone deacetylase HDT1-like [Cucurbita maxima]	[more]

BLAST of MS005142 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6V9I6	1.4e-24	58.16	Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1	[more]
Q8LJS2	4.2e-21	53.26	Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1	[more]
Q9M4U5	6.1e-20	42.61	Histone deacetylase HDT2 OS=Zea mays OX=4577 GN=HDT2 PE=1 SV=1	[more]
Q9FVE6	5.2e-19	45.95	Histone deacetylase HDT1 OS=Arabidopsis thaliana OX=3702 GN=HDT1 PE=1 SV=1	[more]
O24591	5.2e-19	47.42	Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1	[more]

BLAST of MS005142 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG52	2.3e-46	100.00	histone deacetylase HDT1-like OS=Momordica charantia OX=3673 GN=LOC111011215 PE=...	[more]
A0A6J1FXQ5	7.4e-45	94.85	histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448147 PE=3...	[more]
A0A6J1JAV6	6.3e-44	93.81	histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484121 PE=3 S...	[more]
A0A6J1H533	4.1e-43	91.75	histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111459656 PE=3...	[more]
A0A6J1FU30	1.3e-41	89.80	histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448146 PE=3...	[more]

BLAST of MS005142 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44750.2	1.3e-20	46.79	histone deacetylase 3	[more]
AT3G44750.1	3.7e-20	45.95	histone deacetylase 3	[more]
AT5G03740.1	1.4e-19	45.36	histone deacetylase 2C	[more]
AT5G22650.1	6.9e-19	44.55	histone deacetylase 2B	[more]
AT5G22650.2	6.9e-19	44.55	histone deacetylase 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041232	Nucleoplasmin-like domain	PFAM	PF17800	NPL	coord: 7..95 e-value: 4.6E-10 score: 40.1
None	No IPR available	GENE3D	2.60.120.340	Nucleoplasmin core domain	coord: 3..103 e-value: 4.5E-15 score: 57.7
None	No IPR available	PANTHER	PTHR31802	32 KDA HEAT SHOCK PROTEIN-RELATED	coord: 7..102
None	No IPR available	PANTHER	PTHR31802:SF12	HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1	coord: 7..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005142.1	MS005142.1	mRNA