MS005140 (gene) Bitter gourd (TR) v1

Overview


Name	MS005140
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	histone deacetylase HDT1-like
Location	scaffold176: 2993665 .. 2994388 (-)
RNA-Seq Expression	MS005140
Synteny	MS005140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAGTAGCGACTCTGATGATGAAGATGATGGTACTGAAAGTGATGAGGAGACACCAAAGAAGGTGTTGTGGTCATATAGTTTCTTATCTTCTTTTTGTACTTCTTTACATGAAAAGTTTTAACATTTTATACGTTGGTCCATTATAGATAGCATCATTTTGATTTTCTTTTGTCCTTGTAGGTTGAATCAACCAAGAAGAGGTTGAATGAGTCTGCCTCCAAGATGACTCCCCTTCCTGCTAAGAAGGCAAAGCTAGTTTCGCCTGAGAAGACTGGTGATTCTTTTGACCATTCATTTATTTCGTACCAACATGCGGGCTTAACCATTTGTTTCTAAAATGACAAATTTTAGTTATCCTTTCTCTTTCCTTATCAAGTGATCAAAATTTAGCTTAGCTTTACAAGTGTGTGGCTTGTTTTCCATTCGAGTAGAATTGATGCCGAACTTGTTGGTTGTTTGTTGCCAGATTCGAAGAAGGGTGGCCATACAGCTACTCCCCACCCTGCCAAGAAGTCTGCTAAAACTCCTACTAAGTCAGAGAGCCCAAAATCTGGTGGCCAGTTCTCTTGCAAACCCTGCAACAAGTATGTTCGTCACTATAGAGATTACTTACTGAAAAATATAACGTTTCGAGGTTTCTGATGTCGTGTCCCCATTATAACAGGTCATTTGGTACGGATAAGGCACTTCAGTCACACAGTAAGGCTAAGCATGGGGGTAAG

mRNA sequence

GACAGTAGCGACTCTGATGATGAAGATGATGGTACTGAAAGTGATGAGGAGACACCAAAGAAGGTTGAATCAACCAAGAAGAGGTTGAATGAGTCTGCCTCCAAGATGACTCCCCTTCCTGCTAAGAAGGCAAAGCTAGTTTCGCCTGAGAAGACTGATTCGAAGAAGGGTGGCCATACAGCTACTCCCCACCCTGCCAAGAAGTCTGCTAAAACTCCTACTAAGTCAGAGAGCCCAAAATCTGGTGGCCAGTTCTCTTGCAAACCCTGCAACAAGTCATTTGGTACGGATAAGGCACTTCAGTCACACAGTAAGGCTAAGCATGGGGGTAAG

Coding sequence (CDS)

GACAGTAGCGACTCTGATGATGAAGATGATGGTACTGAAAGTGATGAGGAGACACCAAAGAAGGTTGAATCAACCAAGAAGAGGTTGAATGAGTCTGCCTCCAAGATGACTCCCCTTCCTGCTAAGAAGGCAAAGCTAGTTTCGCCTGAGAAGACTGATTCGAAGAAGGGTGGCCATACAGCTACTCCCCACCCTGCCAAGAAGTCTGCTAAAACTCCTACTAAGTCAGAGAGCCCAAAATCTGGTGGCCAGTTCTCTTGCAAACCCTGCAACAAGTCATTTGGTACGGATAAGGCACTTCAGTCACACAGTAAGGCTAAGCATGGGGGTAAG

Protein sequence

DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK

Homology

[Close]

BLAST of MS005140 vs. NCBI nr
Match: XP_022140695.1 (histone deacetylase HDT1-like [Momordica charantia])

HSP 1 Score: 201.4 bits (511), Expect = 3.9e-48
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHT 60
           DSSDSDDEDDGTESDEETPKKVESTKKRLNESASK TPLPAKKAKLVSPEKTDSKKGGHT
Sbjct: 185 DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKTTPLPAKKAKLVSPEKTDSKKGGHT 244

Query: 61  ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
           ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK
Sbjct: 245 ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 295

[Close]

BLAST of MS005140 vs. NCBI nr
Match: XP_022958436.1 (histone deacetylase HDT1-like [Cucurbita moschata])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHT 60
           DSSDSDDEDD TESDEETPKKVE TKKR NESASK TPLPAKKAKL SPEKTDSKKGGHT
Sbjct: 187 DSSDSDDEDDDTESDEETPKKVEPTKKRPNESASKTTPLPAKKAKLASPEKTDSKKGGHT 246

Query: 61  ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
           ATPHP KK+AKTP KSE+PKSGGQFSCK C++SFG+D ALQSHSKAKHGGK
Sbjct: 247 ATPHPTKKNAKTPAKSETPKSGGQFSCKSCDRSFGSDGALQSHSKAKHGGK 297

[Close]

BLAST of MS005140 vs. NCBI nr
Match: KAG6606012.1 (Histone deacetylase HDT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-40
Identity = 96/111 (86.49%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHT 60
           DSSDSDDEDD TESDEETPKKVE+TKKR NESASK TPLPAKKAKL SPEKTDSKKGGHT
Sbjct: 187 DSSDSDDEDDDTESDEETPKKVEATKKRPNESASKTTPLPAKKAKLASPEKTDSKKGGHT 246

Query: 61  ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
           ATPHP KK+AKTP KSE+PKSGGQFSCK C++SFG+D ALQSHSKAKHGG+
Sbjct: 247 ATPHPTKKNAKTPAKSETPKSGGQFSCKSCDRSFGSDGALQSHSKAKHGGR 297

[Close]

BLAST of MS005140 vs. NCBI nr
Match: XP_022996072.1 (histone deacetylase HDT1-like [Cucurbita maxima])

HSP 1 Score: 174.5 bits (441), Expect = 5.2e-40
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHT 60
           DSSDSDD DD TESDEETPKKVE+TKKR NESASK TPLPAKKAKL SPEKTDSKKGGHT
Sbjct: 187 DSSDSDDVDDDTESDEETPKKVEATKKRPNESASKTTPLPAKKAKLASPEKTDSKKGGHT 246

Query: 61  ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
           ATPHP KK+AKTP KSE+PKSGGQFSCK C++SFG+D ALQSHSKAKHGGK
Sbjct: 247 ATPHPTKKNAKTPAKSETPKSGGQFSCKSCDRSFGSDGALQSHSKAKHGGK 297

[Close]

BLAST of MS005140 vs. NCBI nr
Match: KAG7035961.1 (Histone deacetylase HDT1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.1 bits (440), Expect = 6.7e-40
Identity = 95/111 (85.59%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHT 60
           DSSDSDDEDD TESDEETPKKVE+TKKR +ESASK TPLPAKKAKL SPEKTDSKKGGHT
Sbjct: 459 DSSDSDDEDDDTESDEETPKKVEATKKRPDESASKTTPLPAKKAKLASPEKTDSKKGGHT 518

Query: 61  ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
           ATPHP KK+AKTP KS++PKSGGQFSCK C++SFG+D ALQSHSKAKHGGK
Sbjct: 519 ATPHPTKKNAKTPAKSDTPKSGGQFSCKSCDRSFGSDGALQSHSKAKHGGK 569

[Close]

BLAST of MS005140 vs. ExPASy Swiss-Prot
Match: Q8LJS2 (Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.6e-22
Identity = 68/114 (59.65%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETP-KKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGH 60
           D S+S++E DG   DEETP KKV+  KKR NESA+K TP+ AKKAK  +PEKTD KK  H
Sbjct: 185 DDSNSEEESDG--DDEETPAKKVDQGKKRPNESAAK-TPISAKKAKTATPEKTDGKKSVH 244

Query: 61  TATPHPAKKSAKTP--TKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
            ATPHP+KK  KTP  TK ++P S GQ SC  C KSF  +  LQ H KAKHGG+
Sbjct: 245 VATPHPSKKGGKTPNSTKGQTPNSAGQLSCASCKKSFTNEAGLQQHKKAKHGGQ 295

[Close]

BLAST of MS005140 vs. ExPASy Swiss-Prot
Match: Q6V9I6 (Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-21
Identity = 64/109 (58.72%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKK-GGH 60
           DS   +DEDD  +S+EETPKK E  K+R  +SA+K TP+  KKAKL +P+KTD KK GGH
Sbjct: 164 DSDMGEDEDDSDDSEEETPKKAEPAKRRKADSATK-TPVTDKKAKLTTPQKTDGKKGGGH 223

Query: 61  TATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKH 109
            ATPHP+K+++KT      PKS G   CKPCN+SFG++ AL SHSKAKH
Sbjct: 224 VATPHPSKQASKT------PKSAGSHHCKPCNRSFGSEGALDSHSKAKH 265

[Close]

BLAST of MS005140 vs. ExPASy Swiss-Prot
Match: O24591 (Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.4e-16
Identity = 64/121 (52.89%), Postives = 75/121 (61.98%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSP--EKTDSKKGG 60
           DSSD DD  D  E D  TPKK E  KKR  ES+   TPL  KKAK+ +P  +KT  KKG 
Sbjct: 182 DSSDEDDTSDDEEEDTPTPKKPEVGKKRPAESSVLKTPLSDKKAKVATPSSQKTGGKKGA 241

Query: 61  --HTATPHPAK--------KSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKH 110
             H ATPHPAK        KS K+P    +PKSGG   CKPC+KSF ++ ALQ+HS+AK 
Sbjct: 242 AVHVATPHPAKGKTIVNNDKSVKSP--KSAPKSGGSVPCKPCSKSFISETALQAHSRAKM 300

[Close]

BLAST of MS005140 vs. ExPASy Swiss-Prot
Match: Q9LZR5 (Histone deacetylase HDT3 OS=Arabidopsis thaliana OX=3702 GN=HDT3 PE=1 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-15
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGG-H 60
           +  DS D+++   S+EETPKK E  KKR  E  S   P   KKAK V+P+KTDSKK   H
Sbjct: 173 EEDDSSDDEEDDSSEEETPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVH 232

Query: 61  TATPHPAKKSAK---------TPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKH 109
            ATPHP+K++ K         T  + ++PKS G F CK C ++F ++  LQSH+KAKH
Sbjct: 233 VATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKH 290

[Close]

BLAST of MS005140 vs. ExPASy Swiss-Prot
Match: Q9M4U4 (Histone deacetylase HDT3 OS=Zea mays OX=4577 GN=HDT3 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.0e-15
Identity = 65/123 (52.85%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSP--EKTDSKKGG 60
           DSSD DD  D  E D  TPKK E  KKR  ES+   TPL  KKAK+ +P  +KT  KKG 
Sbjct: 182 DSSDEDDTSDDEEEDTPTPKKPEVGKKRAAESSVLKTPLSDKKAKVATPSSQKTGGKKGA 241

Query: 61  --HTATPHPAK--------KSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKH 112
             H ATPHPAK        KS K+P    +PKSG    CK C+KSF ++ A Q+HSKAKH
Sbjct: 242 AVHVATPHPAKGKTIVNNDKSVKSP--KSAPKSG--VPCKSCSKSFISETAPQAHSKAKH 300

[Close]

BLAST of MS005140 vs. ExPASy TrEMBL
Match: A0A6J1CFU4 (histone deacetylase HDT1-like OS=Momordica charantia OX=3673 GN=LOC111011296 PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHT 60
           DSSDSDDEDDGTESDEETPKKVESTKKRLNESASK TPLPAKKAKLVSPEKTDSKKGGHT
Sbjct: 185 DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKTTPLPAKKAKLVSPEKTDSKKGGHT 244

Query: 61  ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
           ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK
Sbjct: 245 ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 295

[Close]

BLAST of MS005140 vs. ExPASy TrEMBL
Match: A0A6J1H225 (histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111459657 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41
Identity = 97/111 (87.39%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHT 60
           DSSDSDDEDD TESDEETPKKVE TKKR NESASK TPLPAKKAKL SPEKTDSKKGGHT
Sbjct: 187 DSSDSDDEDDDTESDEETPKKVEPTKKRPNESASKTTPLPAKKAKLASPEKTDSKKGGHT 246

Query: 61  ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
           ATPHP KK+AKTP KSE+PKSGGQFSCK C++SFG+D ALQSHSKAKHGGK
Sbjct: 247 ATPHPTKKNAKTPAKSETPKSGGQFSCKSCDRSFGSDGALQSHSKAKHGGK 297

[Close]

BLAST of MS005140 vs. ExPASy TrEMBL
Match: A0A6J1K0W9 (histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111491387 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.5e-40
Identity = 96/111 (86.49%), Postives = 102/111 (91.89%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHT 60
           DSSDSDD DD TESDEETPKKVE+TKKR NESASK TPLPAKKAKL SPEKTDSKKGGHT
Sbjct: 187 DSSDSDDVDDDTESDEETPKKVEATKKRPNESASKTTPLPAKKAKLASPEKTDSKKGGHT 246

Query: 61  ATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
           ATPHP KK+AKTP KSE+PKSGGQFSCK C++SFG+D ALQSHSKAKHGGK
Sbjct: 247 ATPHPTKKNAKTPAKSETPKSGGQFSCKSCDRSFGSDGALQSHSKAKHGGK 297

[Close]

BLAST of MS005140 vs. ExPASy TrEMBL
Match: A0A6J1JAV1 (histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484116 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 90/112 (80.36%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHT 60
           DS DSDDEDD ++SDEETPKK+E TKKR NESA+K TPLPAKKAKL SP KTDSKKGGHT
Sbjct: 189 DSGDSDDEDDDSDSDEETPKKIEPTKKRSNESATKTTPLPAKKAKLASPGKTDSKKGGHT 248

Query: 61  ATPHPAKKSAKTP-TKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
           ATPHPAKK+ KTP  K ESPKSGGQFSCK C+++FG+D ALQSHSKAKHGGK
Sbjct: 249 ATPHPAKKTGKTPVAKLESPKSGGQFSCKSCDRAFGSDGALQSHSKAKHGGK 300

[Close]

BLAST of MS005140 vs. ExPASy TrEMBL
Match: A0A6J1FU30 (histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448146 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.9e-36
Identity = 90/112 (80.36%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGGHT 60
           DS DSDDEDD ++SDEETPKK+E TKKR NESA+K TPLPAKKAKL SP KTDSKKGGHT
Sbjct: 189 DSGDSDDEDDDSDSDEETPKKIEPTKKRPNESATKTTPLPAKKAKLASPGKTDSKKGGHT 248

Query: 61  ATPHPAKKSAKTP-TKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKHGGK 112
           ATPHPAKK+ KTP  K ESPKSGGQFSCK C+++FG+D ALQSHSKAKHGGK
Sbjct: 249 ATPHPAKKTGKTPAAKLESPKSGGQFSCKSCDRAFGSDGALQSHSKAKHGGK 300

[Close]

BLAST of MS005140 vs. TAIR 10
Match: AT5G03740.1 (histone deacetylase 2C )

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVESTKKRLNESASKMTPLPAKKAKLVSPEKTDSKKGG-H 60
           +  DS D+++   S+EETPKK E  KKR  E  S   P   KKAK V+P+KTDSKK   H
Sbjct: 173 EEDDSSDDEEDDSSEEETPKKPEEPKKRSAEPNSSKNPASNKKAKFVTPQKTDSKKPHVH 232

Query: 61  TATPHPAKKSAK---------TPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKH 109
            ATPHP+K++ K         T  + ++PKS G F CK C ++F ++  LQSH+KAKH
Sbjct: 233 VATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQSHTKAKH 290

[Close]

BLAST of MS005140 vs. TAIR 10
Match: AT5G22650.2 (histone deacetylase 2B )

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 62/120 (51.67%), Postives = 76/120 (63.33%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVES-TKKRLNESASKMTPLPAKKAK-----LVSPEKTDS 60
           DS D ++ED   E +EETPKK E   KKR NES SK TP+  KKAK       +P+KT+ 
Sbjct: 182 DSDDDEEEDSEDEEEEETPKKPEPINKKRPNESVSK-TPVSGKKAKPAAAPASTPQKTEK 241

Query: 61  KKGGHTATPHPAKKSAKTPTK-SESPKSGGQFSCKPCNKS-FGTDKAL-QSHSKAKHGGK 112
           KKGGHTATPHPAKK  K+P   ++SPKSGGQ S    NK  F + K    S++K  + GK
Sbjct: 242 KKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSGGNNNKKPFNSGKQFGGSNNKGSNKGK 300

[Close]

BLAST of MS005140 vs. TAIR 10
Match: AT5G22650.1 (histone deacetylase 2B )

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-12
Identity = 62/121 (51.24%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 1   DSSDSDDEDDGTESDEETPKKVES-TKKRLNESASKMTPLPAKKAK-----LVSPEKT-D 60
           DS D ++ED   E +EETPKK E   KKR NES SK TP+  KKAK       +P+KT +
Sbjct: 182 DSDDDEEEDSEDEEEEETPKKPEPINKKRPNESVSK-TPVSGKKAKPAAAPASTPQKTEE 241

Query: 61  SKKGGHTATPHPAKKSAKTPTK-SESPKSGGQFSCKPCNKS-FGTDKAL-QSHSKAKHGG 112
            KKGGHTATPHPAKK  K+P   ++SPKSGGQ S    NK  F + K    S++K  + G
Sbjct: 242 KKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSGGNNNKKPFNSGKQFGGSNNKGSNKG 301

[Close]

BLAST of MS005140 vs. TAIR 10
Match: AT3G44750.1 (histone deacetylase 3 )

HSP 1 Score: 67.8 bits (164), Expect = 6.3e-12
Identity = 55/115 (47.83%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 1   DSSDSD----DEDDGTESDEE--TPKKVESTKKRLNESASKMTPLPAKKAKL-VSPEKTD 60
           D SDSD    D+ DG +S+EE  TPKK  S+KKR NE+  K  P+ AKKAK+ V+P+KTD
Sbjct: 141 DESDSDGMDEDDSDGEDSEEEEPTPKKPASSKKRANETTPK-APVSAKKAKVAVTPQKTD 200

Query: 61  SKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKH 109
            KK G  A              ++SPKS  Q SC  C K+F +  AL+SH+KAKH
Sbjct: 201 EKKKGGKAA-------------NQSPKSASQVSCGSCKKTFNSGNALESHNKAKH 241

[Close]

BLAST of MS005140 vs. TAIR 10
Match: AT3G44750.2 (histone deacetylase 3 )

HSP 1 Score: 67.8 bits (164), Expect = 6.3e-12
Identity = 55/115 (47.83%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 1   DSSDSD----DEDDGTESDEE--TPKKVESTKKRLNESASKMTPLPAKKAKL-VSPEKTD 60
           D SDSD    D+ DG +S+EE  TPKK  S+KKR NE+  K  P+ AKKAK+ V+P+KTD
Sbjct: 138 DESDSDGMDEDDSDGEDSEEEEPTPKKPASSKKRANETTPK-APVSAKKAKVAVTPQKTD 197

Query: 61  SKKGGHTATPHPAKKSAKTPTKSESPKSGGQFSCKPCNKSFGTDKALQSHSKAKH 109
            KK G  A              ++SPKS  Q SC  C K+F +  AL+SH+KAKH
Sbjct: 198 EKKKGGKAA-------------NQSPKSASQVSCGSCKKTFNSGNALESHNKAKH 238

The following BLAST results are available for this feature:

BLAST of MS005140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140695.1	3.9e-48	99.10	histone deacetylase HDT1-like [Momordica charantia]	[more]
XP_022958436.1	1.4e-40	87.39	histone deacetylase HDT1-like [Cucurbita moschata]	[more]
KAG6606012.1	1.8e-40	86.49	Histone deacetylase HDT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022996072.1	5.2e-40	86.49	histone deacetylase HDT1-like [Cucurbita maxima]	[more]
KAG7035961.1	6.7e-40	85.59	Histone deacetylase HDT1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS005140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LJS2	6.6e-22	59.65	Histone deacetylase HDT1 OS=Glycine max OX=3847 GN=HDT1 PE=2 SV=1	[more]
Q6V9I6	1.5e-21	58.72	Histone deacetylase HDT1 OS=Solanum chacoense OX=4108 GN=HDT1 PE=2 SV=1	[more]
O24591	5.4e-16	52.89	Histone deacetylase HDT1 OS=Zea mays OX=4577 GN=HDT1 PE=1 SV=1	[more]
Q9LZR5	1.6e-15	46.61	Histone deacetylase HDT3 OS=Arabidopsis thaliana OX=3702 GN=HDT3 PE=1 SV=2	[more]
Q9M4U4	6.0e-15	52.85	Histone deacetylase HDT3 OS=Zea mays OX=4577 GN=HDT3 PE=2 SV=1	[more]

BLAST of MS005140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CFU4	1.9e-48	99.10	histone deacetylase HDT1-like OS=Momordica charantia OX=3673 GN=LOC111011296 PE=...	[more]
A0A6J1H225	6.6e-41	87.39	histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111459657 PE=3...	[more]
A0A6J1K0W9	2.5e-40	86.49	histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111491387 PE=3 S...	[more]
A0A6J1JAV1	2.2e-36	80.36	histone deacetylase HDT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484116 PE=3 S...	[more]
A0A6J1FU30	2.9e-36	80.36	histone deacetylase HDT1-like OS=Cucurbita moschata OX=3662 GN=LOC111448146 PE=3...	[more]

BLAST of MS005140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03740.1	1.1e-16	46.61	histone deacetylase 2C	[more]
AT5G22650.2	1.5e-13	51.67	histone deacetylase 2B	[more]
AT5G22650.1	3.7e-12	51.24	histone deacetylase 2B	[more]
AT3G44750.1	6.3e-12	47.83	histone deacetylase 3	[more]
AT3G44750.2	6.3e-12	47.83	histone deacetylase 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 70..109 e-value: 4.8E-6 score: 28.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..111
None	No IPR available	PANTHER	PTHR31802:SF12	HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1	coord: 1..107
None	No IPR available	PANTHER	PTHR31802	32 KDA HEAT SHOCK PROTEIN-RELATED	coord: 1..107
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 87..108
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 85..111 score: 11.717827
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 76..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005140.1	MS005140.1	mRNA