MS005119 (gene) Bitter gourd (TR) v1

Overview


Name	MS005119
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transmembrane protein
Location	scaffold176: 2823019 .. 2823317 (-)
RNA-Seq Expression	MS005119
Synteny	MS005119

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACGTCGTCGAAATATTATCGTTGCCACTGGATTGATAGCCTTTGCATCTGCTGGGTTGGCATTTCCCTTTTACATGGCGTAAGTAAATGGACTCATGGCTGCTACTGACAATTTTACTATGCCTTTGAATGAATATGCACACAAAGTTAATGTAGAAAAGGGTTATACAGGTCTTCCAAAAAGCCAGTTATTGATCCGGGAAAGCCACTTCCTCCGCAGGCAACTTTTCGAGGTCCTTACATAAACACTGGTTCTCGAGACGTCGGACCCGACCATCAAACTTATACTAAGAAG

mRNA sequence

ATGTCACGTCGTCGAAATATTATCGTTGCCACTGGATTGATAGCCTTTGCATCTGCTGGGTTGGCATTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATTGATCCGGGAAAGCCACTTCCTCCGCAGGCAACTTTTCGAGGTCCTTACATAAACACTGGTTCTCGAGACGTCGGACCCGACCATCAAACTTATACTAAGAAG

Coding sequence (CDS)

ATGTCACGTCGTCGAAATATTATCGTTGCCACTGGATTGATAGCCTTTGCATCTGCTGGGTTGGCATTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATTGATCCGGGAAAGCCACTTCCTCCGCAGGCAACTTTTCGAGGTCCTTACATAAACACTGGTTCTCGAGACGTCGGACCCGACCATCAAACTTATACTAAGAAG

Protein sequence

MSRRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVGPDHQTYTKK

Homology

[Close]

BLAST of MS005119 vs. NCBI nr
Match: XP_022140323.1 (uncharacterized protein LOC111011024 [Momordica charantia])

HSP 1 Score: 140.2 bits (352), Expect = 6.7e-30
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSRRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG 60
          M+RRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MTRRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDHQTY+KK
Sbjct: 61 PDHQTYSKK 69

[Close]

BLAST of MS005119 vs. NCBI nr
Match: XP_008465426.1 (PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo] >XP_016903386.1 PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 1.3e-28
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MSRRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG 60
          M+RRRN+IVA GLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MTRRRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDHQTYTKK
Sbjct: 61 PDHQTYTKK 69

[Close]

BLAST of MS005119 vs. NCBI nr
Match: XP_022944261.1 (uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944262.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944263.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944264.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944266.1 uncharacterized protein LOC111448766 [Cucurbita moschata])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 4  RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVGPDH 63
          RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 3  RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 62

Query: 64 QTYTKK 70
          QTYTKK
Sbjct: 63 QTYTKK 68

[Close]

BLAST of MS005119 vs. NCBI nr
Match: KAG7010668.1 (hypothetical protein SDJN02_27463, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 4  RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVGPDH 63
          RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 30 RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 89

Query: 64 QTYTKK 70
          QTYTKK
Sbjct: 90 QTYTKK 95

[Close]

BLAST of MS005119 vs. NCBI nr
Match: KAG6570826.1 (hypothetical protein SDJN03_29741, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 4   RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVGPDH 63
           RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 136 RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 195

Query: 64  QTYTKK 70
           QTYTKK
Sbjct: 196 QTYTKK 201

[Close]

BLAST of MS005119 vs. ExPASy TrEMBL
Match: A0A6J1CHR8 (uncharacterized protein LOC111011024 OS=Momordica charantia OX=3673 GN=LOC111011024 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.2e-30
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MSRRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG 60
          M+RRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MTRRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDHQTY+KK
Sbjct: 61 PDHQTYSKK 69

[Close]

BLAST of MS005119 vs. ExPASy TrEMBL
Match: A0A1S3CQB9 (uncharacterized protein LOC103503042 OS=Cucumis melo OX=3656 GN=LOC103503042 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.1e-29
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MSRRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG 60
          M+RRRN+IVA GLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MTRRRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDHQTYTKK
Sbjct: 61 PDHQTYTKK 69

[Close]

BLAST of MS005119 vs. ExPASy TrEMBL
Match: A0A6J1FTX8 (uncharacterized protein LOC111448766 OS=Cucurbita moschata OX=3662 GN=LOC111448766 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 4  RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVGPDH 63
          RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 3  RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 62

Query: 64 QTYTKK 70
          QTYTKK
Sbjct: 63 QTYTKK 68

[Close]

BLAST of MS005119 vs. ExPASy TrEMBL
Match: A0A6J1JB19 (uncharacterized protein LOC111484157 OS=Cucurbita maxima OX=3661 GN=LOC111484157 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 4  RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVGPDH 63
          R+NIIVATGLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 3  RQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 62

Query: 64 QTYTKK 70
          QTYTKK
Sbjct: 63 QTYTKK 68

[Close]

BLAST of MS005119 vs. ExPASy TrEMBL
Match: A0A2P5DD11 (Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_254740 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.7e-27
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MSRRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG 60
          MSR RN+IVA GL+AFA+AGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MSRARNVIVAAGLVAFAAAGLAFPFYMASSKKPVIDPSKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PD+QTY KK
Sbjct: 61 PDNQTYPKK 69

[Close]

BLAST of MS005119 vs. TAIR 10
Match: AT5G22875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-29
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MSRRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG 60
          M+  RNI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MAPSRNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDH+TY KK
Sbjct: 61 PDHRTYPKK 69

[Close]

BLAST of MS005119 vs. TAIR 10
Match: AT5G22875.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 125.6 bits (314), Expect = 1.6e-29
Identity = 59/69 (85.51%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MSRRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVG 60
          M+  RNI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MAPSRNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDH+TY KK
Sbjct: 61 PDHRTYPKK 69

The following BLAST results are available for this feature:

BLAST of MS005119 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140323.1	6.7e-30	97.10	uncharacterized protein LOC111011024 [Momordica charantia]	[more]
XP_008465426.1	1.3e-28	94.20	PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo] >XP_016903386.1 P...	[more]
XP_022944261.1	2.2e-28	98.48	uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944262.1 unchar...	[more]
KAG7010668.1	2.2e-28	98.48	hypothetical protein SDJN02_27463, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570826.1	2.2e-28	98.48	hypothetical protein SDJN03_29741, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS005119 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS005119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHR8	3.2e-30	97.10	uncharacterized protein LOC111011024 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1S3CQB9	6.1e-29	94.20	uncharacterized protein LOC103503042 OS=Cucumis melo OX=3656 GN=LOC103503042 PE=...	[more]
A0A6J1FTX8	1.0e-28	98.48	uncharacterized protein LOC111448766 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A6J1JB19	3.0e-28	96.97	uncharacterized protein LOC111484157 OS=Cucurbita maxima OX=3661 GN=LOC111484157...	[more]
A0A2P5DD11	5.7e-27	88.41	Transmembrane protein OS=Trema orientale OX=63057 GN=TorRG33x02_254740 PE=4 SV=1	[more]

BLAST of MS005119 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22875.1	1.6e-29	85.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G22875.2	1.6e-29	85.51	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..69
None	No IPR available	PANTHER	PTHR36070	OSJNBA0019G23.7 PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS005119.1	MS005119.1	mRNA