MS005110 (gene) Bitter gourd (TR) v1

Overview
NameMS005110
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChromodomain helicase DNA binding protein
Locationscaffold176: 2776351 .. 2776484 (-)
RNA-Seq ExpressionMS005110
SyntenyMS005110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGGACTGTGTTTTAATGTGAATTACCAGGATGCATGGTCGGGAGCTGTTATTTTTGGTTCTCAACGAGGAGGATTCTCTTCCCGAAATTGGGCGATGAATTGGATGTTGGAATTGAAACATTGCGTATTACC

mRNA sequence

TATGGACTGTGTTTTAATGTGAATTACCAGGATGCATGGTCGGGAGCTGTTATTTTTGGTTCTCAAAGGAGGATTCTCTTCCCGAAATTGGGCGATGAATTGGATGTTGGAATTGAAACATTGCGTATTACC

Coding sequence (CDS)

TATGGACTGTGTTTTAATGTGAATTACCAGGATGCATGGTCGGGAGCTGTTATTTTTGGTTCTCAAAGGAGGATTCTCTTCCCGAAATTGGGCGATGAATTGGATGTTGGAATTGAAACATTGCGTATTACC

Protein sequence

YGLCFNVNYQDAWSGAVIFGSQRRILFPKLGDELDVGIETLRIT
Homology
[Close]
BLAST of MS005110 vs. NCBI nr
Match: XP_031743821.1 (uncharacterized protein LOC101206451 isoform X2 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 6.0e-08
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT 45
           YGLC +VNYQDAW   VIF       +R++LFP LGDEL VGIET+RIT
Sbjct: 111 YGLCVDVNYQDAWWEGVIFDHEDGSEERKVLFPDLGDELTVGIETMRIT 159

[Close]
BLAST of MS005110 vs. NCBI nr
Match: XP_011657123.1 (uncharacterized protein LOC101206451 isoform X3 [Cucumis sativus] >XP_031743822.1 uncharacterized protein LOC101206451 isoform X3 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 6.0e-08
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT 45
           YGLC +VNYQDAW   VIF       +R++LFP LGDEL VGIET+RIT
Sbjct: 111 YGLCVDVNYQDAWWEGVIFDHEDGSEERKVLFPDLGDELTVGIETMRIT 159

[Close]
BLAST of MS005110 vs. NCBI nr
Match: XP_004143217.1 (uncharacterized protein LOC101206451 isoform X1 [Cucumis sativus] >KGN47068.1 hypothetical protein Csa_020685 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 6.0e-08
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT 45
           YGLC +VNYQDAW   VIF       +R++LFP LGDEL VGIET+RIT
Sbjct: 111 YGLCVDVNYQDAWWEGVIFDHEDGSEERKVLFPDLGDELTVGIETMRIT 159

[Close]
BLAST of MS005110 vs. NCBI nr
Match: XP_038900523.1 (uncharacterized protein LOC120087720 isoform X1 [Benincasa hispida])

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT 45
           YGLC +VNYQDAW   VIF       +R++ FP LGDEL VGIET+RIT
Sbjct: 113 YGLCVDVNYQDAWWEGVIFDHEDGSEERKVFFPDLGDELTVGIETIRIT 161

[Close]
BLAST of MS005110 vs. NCBI nr
Match: XP_038900525.1 (uncharacterized protein LOC120087720 isoform X3 [Benincasa hispida])

HSP 1 Score: 65.1 bits (157), Expect = 1.7e-07
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT 45
           YGLC +VNYQDAW   VIF       +R++ FP LGDEL VGIET+RIT
Sbjct: 113 YGLCVDVNYQDAWWEGVIFDHEDGSEERKVFFPDLGDELTVGIETIRIT 161

[Close]
BLAST of MS005110 vs. ExPASy TrEMBL
Match: A0A0A0KC42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G183200 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-08
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT 45
           YGLC +VNYQDAW   VIF       +R++LFP LGDEL VGIET+RIT
Sbjct: 111 YGLCVDVNYQDAWWEGVIFDHEDGSEERKVLFPDLGDELTVGIETMRIT 159

[Close]
BLAST of MS005110 vs. ExPASy TrEMBL
Match: A0A6J1G7J3 (uncharacterized protein LOC111451473 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451473 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-07
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT 45
           YGLC +V YQDAW   V+F    GS +RRI FP LGDEL VGIETLRIT
Sbjct: 113 YGLCVDVYYQDAWWEGVVFDHEDGSVERRIFFPDLGDELLVGIETLRIT 161

[Close]
BLAST of MS005110 vs. ExPASy TrEMBL
Match: A0A6J1L1Q7 (uncharacterized protein LOC111499614 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499614 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-07
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT 45
           YGLC +V YQDAW   V+F    GS +RRI FP LGDEL VGIETLRIT
Sbjct: 113 YGLCVDVYYQDAWWEGVVFDHEDGSVERRIFFPDLGDELLVGIETLRIT 161

[Close]
BLAST of MS005110 vs. ExPASy TrEMBL
Match: A0A6J1L6G8 (uncharacterized protein LOC111499614 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111499614 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-07
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT 45
           YGLC +V YQDAW   V+F    GS +RRI FP LGDEL VGIETLRIT
Sbjct: 113 YGLCVDVYYQDAWWEGVVFDHEDGSVERRIFFPDLGDELLVGIETLRIT 161

[Close]
BLAST of MS005110 vs. ExPASy TrEMBL
Match: A0A6J1L3P4 (uncharacterized protein LOC111499614 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499614 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-07
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF----GS-QRRILFPKLGDELDVGIETLRIT 45
           YGLC +V YQDAW   V+F    GS +RRI FP LGDEL VGIETLRIT
Sbjct: 113 YGLCVDVYYQDAWWEGVVFDHEDGSVERRIFFPDLGDELLVGIETLRIT 161

[Close]
BLAST of MS005110 vs. TAIR 10
Match: AT5G58610.1 (PHD finger transcription factor, putative )

HSP 1 Score: 53.9 bits (128), Expect = 3.8e-08
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0 

Query: 1   YGLCFNVNYQDAWSGAVIF-----GSQRRILFPKLGDELDVGIETLRIT 45
           YGLC +V + DAW   V+F       +RR+ FP LGDELD  +++LRIT
Sbjct: 109 YGLCVDVFFSDAWWEGVLFDHENGSEKRRVFFPDLGDELDADLQSLRIT 157

The following BLAST results are available for this feature:
BLAST of MS005110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031743821.16.0e-0863.27uncharacterized protein LOC101206451 isoform X2 [Cucumis sativus][more]
XP_011657123.16.0e-0863.27uncharacterized protein LOC101206451 isoform X3 [Cucumis sativus] >XP_031743822.... [more]
XP_004143217.16.0e-0863.27uncharacterized protein LOC101206451 isoform X1 [Cucumis sativus] >KGN47068.1 hy... [more]
XP_038900523.11.7e-0761.22uncharacterized protein LOC120087720 isoform X1 [Benincasa hispida][more]
XP_038900525.11.7e-0761.22uncharacterized protein LOC120087720 isoform X3 [Benincasa hispida][more]
BLAST of MS005110 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS005110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KC422.9e-0863.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G183200 PE=4 SV=1[more]
A0A6J1G7J35.5e-0767.35uncharacterized protein LOC111451473 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1L1Q75.5e-0767.35uncharacterized protein LOC111499614 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1L6G85.5e-0767.35uncharacterized protein LOC111499614 isoform X5 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1L3P45.5e-0767.35uncharacterized protein LOC111499614 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of MS005110 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G58610.13.8e-0848.98PHD finger transcription factor, putative [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005110.1MS005110.1mRNA