MS005045 (gene) Bitter gourd (TR) v1

Overview
NameMS005045
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCarbamoyl-phosphate synthase (glutamine-hydrolyzing)
Locationscaffold176: 2308637 .. 2308770 (+)
RNA-Seq ExpressionMS005045
SyntenyMS005045
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATCTGATGCTAAAGAAATTGGTCCTGATGCACTAGCTGATTCACATGGTAATATGACAATTGGTGGGATAATGGACTAATGGAGCATGAGTTGGCTGGAGTCCATTCTGGTGATTCTGACTGTTCCCTTCCA

mRNA sequence

TTATCTGATGCTAAAGAAATTGGTCCTGATGCACTAGCTGATTCACATGGTAATATGACAATTGGTGGGATAATGGACATGGAGCATGAGTTGGCTGGAGTCCATTCTGGTGATTCTGACTGTTCCCTTCCA

Coding sequence (CDS)

TTATCTGATGCTAAAGAAATTGGTCCTGATGCACTAGCTGATTCACATGGTAATATGACAATTGGTGGGATAATGGACATGGAGCATGAGTTGGCTGGAGTCCATTCTGGTGATTCTGACTGTTCCCTTCCA

Protein sequence

LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP
Homology
BLAST of MS005045 vs. NCBI nr
Match: KAG6607722.1 (Carbamoyl-phosphate synthase large chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAVEIDIDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

BLAST of MS005045 vs. NCBI nr
Match: XP_022940780.1 (carbamoyl-phosphate synthase large chain, chloroplastic-like [Cucurbita moschata] >XP_022940781.1 carbamoyl-phosphate synthase large chain, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAVEIDIDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

BLAST of MS005045 vs. NCBI nr
Match: XP_038899248.1 (carbamoyl-phosphate synthase large chain, chloroplastic [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 857 LSDAIEIDVDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 899

BLAST of MS005045 vs. NCBI nr
Match: KAG7037297.1 (Carbamoyl-phosphate synthase large chain, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 855 LSDAVEIDIDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 897

BLAST of MS005045 vs. NCBI nr
Match: XP_008447795.1 (PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAIEIDVDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

BLAST of MS005045 vs. ExPASy Swiss-Prot
Match: B9EXM2 (Carbamoyl-phosphate synthase large chain, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CARB PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.4e-07
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           L DA EI  DALADS GN+ IGGIM+   E AG+HSGDS CSLP
Sbjct: 838 LIDAIEIDVDALADSVGNVVIGGIME-HIEQAGIHSGDSACSLP 880

BLAST of MS005045 vs. ExPASy Swiss-Prot
Match: Q42601 (Carbamoyl-phosphate synthase large chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CARB PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.1e-07
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  D L DS+GN+ IGGIM+   E AGVHSGDS C LP
Sbjct: 859 LSDAIEIDVDTLTDSYGNVVIGGIME-HIEQAGVHSGDSACMLP 901

BLAST of MS005045 vs. ExPASy Swiss-Prot
Match: P58942 (Carbamoyl-phosphate synthase large chain OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=carB PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.5e-06
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           L +A E+  D +AD  GN+ IGG+M+   E AGVHSGDS CSLP
Sbjct: 756 LDNAVEVDVDIIADKDGNVLIGGVMEHIEE-AGVHSGDSSCSLP 798

BLAST of MS005045 vs. ExPASy Swiss-Prot
Match: P58943 (Carbamoyl-phosphate synthase large chain OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=carB PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 4.5e-06
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           L +A E+  D +AD  GN+ IGG+M+   E AGVHSGDS CSLP
Sbjct: 756 LDNAVEVDVDIIADKDGNVLIGGVMEHIEE-AGVHSGDSSCSLP 798

BLAST of MS005045 vs. ExPASy Swiss-Prot
Match: Q8YQL2 (Carbamoyl-phosphate synthase large chain OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=carB PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.7e-05
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           L +A E+  DA+AD  G + IGGIM+   E AG+HSGDS CSLP
Sbjct: 780 LENAIEVDVDAIADHTGRVVIGGIME-HIEQAGIHSGDSACSLP 822

BLAST of MS005045 vs. ExPASy TrEMBL
Match: A0A6J1FJE6 (Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucurbita moschata OX=3662 GN=LOC111446274 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAVEIDIDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

BLAST of MS005045 vs. ExPASy TrEMBL
Match: A0A6J1IZ99 (Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucurbita maxima OX=3661 GN=LOC111480508 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAVEIDIDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

BLAST of MS005045 vs. ExPASy TrEMBL
Match: A0A5D3DID8 (Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002620 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 855 LSDAIEIDVDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 897

BLAST of MS005045 vs. ExPASy TrEMBL
Match: A0A0A0K592 (Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucumis sativus OX=3659 GN=Csa_7G189190 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 858 LSDAIEIDVDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 900

BLAST of MS005045 vs. ExPASy TrEMBL
Match: A0A6J1CFG0 (Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Momordica charantia OX=3673 GN=LOC111010317 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  DALADSHGN+TIGGIM+   ELAGVHSGDS CSLP
Sbjct: 859 LSDAIEIDVDALADSHGNVTIGGIME-HIELAGVHSGDSACSLP 901

BLAST of MS005045 vs. TAIR 10
Match: AT1G29900.1 (carbamoyl phosphate synthetase B )

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-08
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 1   LSDAKEIGPDALADSHGNMTIGGIMDMEHELAGVHSGDSDCSLP 45
           LSDA EI  D L DS+GN+ IGGIM+   E AGVHSGDS C LP
Sbjct: 859 LSDAIEIDVDTLTDSYGNVVIGGIME-HIEQAGVHSGDSACMLP 901

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6607722.17.8e-0879.55Carbamoyl-phosphate synthase large chain, chloroplastic, partial [Cucurbita argy... [more]
XP_022940780.17.8e-0879.55carbamoyl-phosphate synthase large chain, chloroplastic-like [Cucurbita moschata... [more]
XP_038899248.17.8e-0879.55carbamoyl-phosphate synthase large chain, chloroplastic [Benincasa hispida][more]
KAG7037297.17.8e-0879.55Carbamoyl-phosphate synthase large chain, chloroplastic, partial [Cucurbita argy... [more]
XP_008447795.17.8e-0879.55PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Cucumis melo... [more]
Match NameE-valueIdentityDescription
B9EXM22.4e-0768.18Carbamoyl-phosphate synthase large chain, chloroplastic OS=Oryza sativa subsp. j... [more]
Q426013.1e-0765.91Carbamoyl-phosphate synthase large chain, chloroplastic OS=Arabidopsis thaliana ... [more]
P589424.5e-0656.82Carbamoyl-phosphate synthase large chain OS=Xanthomonas axonopodis pv. citri (st... [more]
P589434.5e-0656.82Carbamoyl-phosphate synthase large chain OS=Xanthomonas campestris pv. campestri... [more]
Q8YQL21.7e-0556.82Carbamoyl-phosphate synthase large chain OS=Nostoc sp. (strain PCC 7120 / SAG 25... [more]
Match NameE-valueIdentityDescription
A0A6J1FJE63.8e-0879.55Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucurbita moschata OX=36... [more]
A0A6J1IZ993.8e-0879.55Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucurbita maxima OX=3661... [more]
A0A5D3DID83.8e-0879.55Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucumis melo var. makuwa... [more]
A0A0A0K5923.8e-0879.55Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Cucumis sativus OX=3659 ... [more]
A0A6J1CFG03.8e-0879.55Carbamoyl-phosphate synthase (glutamine-hydrolyzing) OS=Momordica charantia OX=3... [more]
Match NameE-valueIdentityDescription
AT1G29900.12.2e-0865.91carbamoyl phosphate synthetase B [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.470.20coord: 1..44
e-value: 5.6E-6
score: 27.6
NoneNo IPR availableSUPERFAMILY56059Glutathione synthetase ATP-binding domain-likecoord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS005045.1MS005045.1mRNA