MS004981 (gene) Bitter gourd (TR) v1

Overview


Name	MS004981
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Mitochondrial transcription termination factor family protein
Location	scaffold176: 1872444 .. 1873402 (+)
RNA-Seq Expression	MS004981
Synteny	MS004981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATATTTCAGCGCCGGCCAACATGGTAGCAGTAGTATTCTATGGTTCTTCCGGAGTAATGGTTTCGACGACAGAAGCATCCATGAAATGTTCAGAAAGTGCAGACGACTTGAAGGTACGCATAACGAAACCGCCTCTGAAAATTGGGCTTTTACTTGAAAAACATTGGAATTCAAGAGAGGAAGCTCCGCAACATGGTTTCCAAGTACCCTAAAATTCTTACTATATGTCTGAACGGGAAGCTTGTTCTTATGGTCGAGTGCCTTGCAACTCTCGGTAATAAACCCCATGAAGTTGCTTCGGCCATTGCCAAATTTCCTTATGTGCTTTTTCACAGCATGGAAGAGAAGTTGTGCCCGCTTTTGGCTTTCTTTCAGGCATTGAATATCCCTGAGAAGCAGCTTGGCAAGATGATTTTACTCAACCCCAGGCTCGTTAGCTACAGCATTGTGCCGAAGCTTACTGAGATTGTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGTTATAGTGTGGATAAAAGGCTACGTCCGACGTTAGAGTTTCTGAAATCTATAGGATTGAAGGATATAGATCTTCAAGCAGTTGCAGTTGGCTACCCTGAAGTTCTATGTAGGGATGCTAACAAAGTTCTGAGACCTAATTTTGATTTCCTGAAGAACTGTGGCTTTCGAGATGCGCAGATAGTAGCTCTGGTGTCTGGTTACCCGCCTATTTTGATTAAGAGCATTAAGTATGTTTTAGAACCGCGGATCAAATTCTTGATAGAAGTTATGGGGAGGAGAATTGAAGAGGTTGCCGGTTATCCAGACTTCTTTCGGCATGGTTTGAAGAAGAGGCTAGAGTTGGGGCACAAAATTTTGGAACGAAACAATATTGACTGTAGTTTGAGTGAAATGCTGGACTGTAATCAA

mRNA sequence

CTATATTTCAGCGCCGGCCAACATGGTAGCAGTAGTATTCTATGGTTCTTCCGGAGTAATGGTTTCGACGACAGAAGCATCCATGAAATGTTCAGAAAGTGCAGACGACTTGAAGGTACGCATAACGAAACCGCCTCTGAAAATTGGTACTTGAAAAACATTGGAATTCAAGAGAGGAAGCTCCGCAACATGGTTTCCAAGTACCCTAAAATTCTTACTATATGTCTGAACGGGAAGCTTGTTCTTATGGTCGAGTGCCTTGCAACTCTCGGTAATAAACCCCATGAAGTTGCTTCGGCCATTGCCAAATTTCCTTATGTGCTTTTTCACAGCATGGAAGAGAAGTTGTGCCCGCTTTTGGCTTTCTTTCAGGCATTGAATATCCCTGAGAAGCAGCTTGGCAAGATGATTTTACTCAACCCCAGGCTCGTTAGCTACAGCATTGTGCCGAAGCTTACTGAGATTGTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGTTATAGTGTGGATAAAAGGCTACGTCCGACGTTAGAGTTTCTGAAATCTATAGGATTGAAGGATATAGATCTTCAAGCAGTTGCAGTTGGCTACCCTGAAGTTCTATGTAGGGATGCTAACAAAGTTCTGAGACCTAATTTTGATTTCCTGAAGAACTGTGGCTTTCGAGATGCGCAGATAGTAGCTCTGGTGTCTGGTTACCCGCCTATTTTGATTAAGAGCATTAAGTATGTTTTAGAACCGCGGATCAAATTCTTGATAGAAGTTATGGGGAGGAGAATTGAAGAGGTTGCCGGTTATCCAGACTTCTTTCGGCATGGTTTGAAGAAGAGGCTAGAGTTGGGGCACAAAATTTTGGAACGAAACAATATTGACTGTAGTTTGAGTGAAATGCTGGACTGTAATCAA

Coding sequence (CDS)

CTATATTTCAGCGCCGGCCAACATGGTAGCAGTAGTATTCTATGGTTCTTCCGGAGTAATGGTTTCGACGACAGAAGCATCCATGAAATGTTCAGAAAGTGCAGACGACTTGAAGGTACGCATAACGAAACCGCCTCTGAAAATTGGTACTTGAAAAACATTGGAATTCAAGAGAGGAAGCTCCGCAACATGGTTTCCAAGTACCCTAAAATTCTTACTATATGTCTGAACGGGAAGCTTGTTCTTATGGTCGAGTGCCTTGCAACTCTCGGTAATAAACCCCATGAAGTTGCTTCGGCCATTGCCAAATTTCCTTATGTGCTTTTTCACAGCATGGAAGAGAAGTTGTGCCCGCTTTTGGCTTTCTTTCAGGCATTGAATATCCCTGAGAAGCAGCTTGGCAAGATGATTTTACTCAACCCCAGGCTCGTTAGCTACAGCATTGTGCCGAAGCTTACTGAGATTGTGGACTTTCTTGCTAGTTTTGGCCTTGATAAGGAAGGGATGATTGGCAAAGTTTTGGTAAAATATCCATTTCTTATGGGTTATAGTGTGGATAAAAGGCTACGTCCGACGTTAGAGTTTCTGAAATCTATAGGATTGAAGGATATAGATCTTCAAGCAGTTGCAGTTGGCTACCCTGAAGTTCTATGTAGGGATGCTAACAAAGTTCTGAGACCTAATTTTGATTTCCTGAAGAACTGTGGCTTTCGAGATGCGCAGATAGTAGCTCTGGTGTCTGGTTACCCGCCTATTTTGATTAAGAGCATTAAGTATGTTTTAGAACCGCGGATCAAATTCTTGATAGAAGTTATGGGGAGGAGAATTGAAGAGGTTGCCGGTTATCCAGACTTCTTTCGGCATGGTTTGAAGAAGAGGCTAGAGTTGGGGCACAAAATTTTGGAACGAAACAATATTGACTGTAGTTTGAGTGAAATGCTGGACTGTAATCAA

Protein sequence

LYFSAGQHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENWYLKNIGIQERKLRNMVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFFQALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIVALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILERNNIDCSLSEMLDCNQ

Homology

[Close]

BLAST of MS004981 vs. NCBI nr
Match: XP_031744171.1 (LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 483.0 bits (1242), Expect = 1.9e-132
Identity = 241/313 (77.00%), Postives = 272/313 (86.90%), Query Frame = 0


Query: 7   QHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNIGIQERKLRNMV 66
           Q   +  LWFF S GF+++SI +  +KC++LEG   E AS+NW YLKNIGI ER+LR+M 
Sbjct: 170 QSSGARRLWFFWSKGFEEKSISKCSQKCKQLEGMPXEIASQNWDYLKNIGIHERQLRHMF 229

Query: 67  SKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFFQA 126
           SKYPKILTICLNG LVLMVECLATLG+ PHE ASA+A+FPY+LFHSME+KLCP LAFFQA
Sbjct: 230 SKYPKILTICLNGXLVLMVECLATLGSHPHEFASAVAQFPYMLFHSMEDKLCPRLAFFQA 289

Query: 127 LNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSV 186
           L+IPEK LGKMILLNPRL+ YSIVPKLTEIVDF A+FGLDK+G+I KVLVKYPFLMGYSV
Sbjct: 290 LDIPEKLLGKMILLNPRLIRYSIVPKLTEIVDFHANFGLDKQGLIDKVLVKYPFLMGYSV 349

Query: 187 DKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIVAL 246
           DK LRPTL+F KSIGLKD+DLQA+A GYPEVLCRDANKVL PNFDFLKNCGFRDAQIVAL
Sbjct: 350 DKTLRPTLKFFKSIGLKDVDLQAIAGGYPEVLCRDANKVLTPNFDFLKNCGFRDAQIVAL 409

Query: 247 VSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILERNN 306
           V+GYPPILIKSI++ +EP+I FLIE      EEVAGYPDFFRHGLKKRLEL HKIL++NN
Sbjct: 410 VAGYPPILIKSIEHSIEPQINFLIE-----XEEVAGYPDFFRHGLKKRLELRHKILKQNN 469

Query: 307 IDCSLSEMLDCNQ 319
             CSLSEMLD NQ
Sbjct: 470 TKCSLSEMLDRNQ 477

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BLAST of MS004981 vs. NCBI nr
Match: XP_021301114.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Herrania umbratica])

HSP 1 Score: 478.0 bits (1229), Expect = 6.3e-131
Identity = 233/314 (74.20%), Postives = 269/314 (85.67%), Query Frame = 0


Query: 5   AGQHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNIGIQERKLRN 64
           A     SSI+WFFR  GFDD+SI+EMFRKC+RL+G   ETASENW YLK+IGIQERKL +
Sbjct: 4   ASSQNGSSIMWFFRDKGFDDKSINEMFRKCKRLQGVQKETASENWAYLKSIGIQERKLPS 63

Query: 65  MVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFF 124
           +VS+ PKILT+ LN KLV MVECLATLG K HEVA AIA+FP+++ HS+EEKLCPLLAFF
Sbjct: 64  VVSRCPKILTLGLNEKLVPMVECLATLGTKRHEVAYAIARFPHIISHSVEEKLCPLLAFF 123

Query: 125 QALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGY 184
           QAL +PEKQLGKMILLNPRL+SYSI  KLTEIVDFLAS GL +EGMIGKVL KYPF+MGY
Sbjct: 124 QALGVPEKQLGKMILLNPRLISYSIESKLTEIVDFLASLGLTREGMIGKVLSKYPFIMGY 183

Query: 185 SVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIV 244
           SVDKRLRPT EFLKS+GL   DLQ VA+ +PEVLCRD +K+LRPNF +L+ CGF D QI 
Sbjct: 184 SVDKRLRPTSEFLKSVGLSGTDLQTVAMNFPEVLCRDVSKILRPNFAYLERCGFGDRQIA 243

Query: 245 ALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILER 304
           ALV+GYPP+LIKSIK  LEPRI+FL+EVMGR+IEEVA YPDFFRHGLKKRLEL H++L+ 
Sbjct: 244 ALVAGYPPVLIKSIKNSLEPRIRFLVEVMGRQIEEVANYPDFFRHGLKKRLELRHRLLKE 303

Query: 305 NNIDCSLSEMLDCN 318
            ++ CSLSEMLDCN
Sbjct: 304 KDVTCSLSEMLDCN 317

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BLAST of MS004981 vs. NCBI nr
Match: OMP10113.1 (Mitochodrial transcription termination factor-related protein [Corchorus olitorius])

HSP 1 Score: 476.5 bits (1225), Expect = 1.8e-130
Identity = 231/316 (73.10%), Postives = 270/316 (85.44%), Query Frame = 0


Query: 4   SAGQHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNIGIQERKLR 63
           +A     SSI+WFFR  GFDD+SI+EMF+KC+RL+G   E ASENW YLK+IGIQERKL 
Sbjct: 3   AASSQNGSSIMWFFRDKGFDDKSINEMFKKCKRLQGAQKERASENWSYLKSIGIQERKLP 62

Query: 64  NMVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAF 123
           ++VS+ PKILT  LN KLV MVECLATLG K HEVASAI +FP+++ HS+EEKLCPLLAF
Sbjct: 63  SVVSRCPKILTFGLNEKLVPMVECLATLGTKRHEVASAIVRFPHIISHSVEEKLCPLLAF 122

Query: 124 FQALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMG 183
           FQAL +PEKQLGKMILLNPRL+SYSI  KLTEIVDFLA+ GL +EGMIGKVL +YPF+MG
Sbjct: 123 FQALGVPEKQLGKMILLNPRLISYSIDSKLTEIVDFLATLGLAREGMIGKVLARYPFIMG 182

Query: 184 YSVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQI 243
           YSVDKRLRPT EFLKS+GL + DLQ VA+ +PEVLCRD NK+L+PNF +L+ CGF D QI
Sbjct: 183 YSVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVNKILKPNFAYLQQCGFGDRQI 242

Query: 244 VALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILE 303
            ALV+GYPPILIKSIK  LEPRI+FL+EVMGR+I+EVA YPD+FRHGLKKRLEL HK+L+
Sbjct: 243 AALVAGYPPILIKSIKNSLEPRIRFLVEVMGRQIDEVANYPDYFRHGLKKRLELRHKLLK 302

Query: 304 RNNIDCSLSEMLDCNQ 319
             +I CSLSEMLDCNQ
Sbjct: 303 EKDISCSLSEMLDCNQ 318

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BLAST of MS004981 vs. NCBI nr
Match: KAF3951193.1 (hypothetical protein CMV_023131 [Castanea mollissima])

HSP 1 Score: 474.6 bits (1220), Expect = 6.9e-130
Identity = 231/315 (73.33%), Postives = 271/315 (86.03%), Query Frame = 0


Query: 5   AGQHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNIGIQERKLRN 64
           + QHG SSI+WFFR  GFDD+SI+EMF+KC+RLEG   E ASENW YLK+IGIQERKL +
Sbjct: 40  SSQHG-SSIMWFFRDRGFDDKSINEMFKKCKRLEGAQRERASENWAYLKSIGIQERKLPS 99

Query: 65  MVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFF 124
           +VSK PKILT+ L+ KLV MVECL+TLG KPHEVASAI KFP++L HS+EEKLCPLLAFF
Sbjct: 100 IVSKCPKILTLGLHEKLVPMVECLSTLGTKPHEVASAIVKFPHILSHSVEEKLCPLLAFF 159

Query: 125 QALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGY 184
           QAL +PEKQLGKMILLNPRL+SYSI  KLTEI DFLAS GL ++GM+GKV+ K PF+MGY
Sbjct: 160 QALGVPEKQLGKMILLNPRLISYSIESKLTEIADFLASLGLARDGMVGKVMAKNPFIMGY 219

Query: 185 SVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIV 244
           SV+KRLRPT EFL+S+GL + DLQ VA+ +PEVLCRD NKVL+PN DFLK CGF D QI 
Sbjct: 220 SVEKRLRPTSEFLRSVGLAEHDLQTVAMNFPEVLCRDVNKVLKPNLDFLKRCGFGDGQIA 279

Query: 245 ALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILER 304
           ALV+G+PPILIKS++  LEPRIKFL+EVMGR+I+E   YPDFFRHGLKKRLEL HK+L++
Sbjct: 280 ALVTGFPPILIKSVRNSLEPRIKFLVEVMGRQIDEAIDYPDFFRHGLKKRLELRHKLLKK 339

Query: 305 NNIDCSLSEMLDCNQ 319
            NI CSLSEML+CNQ
Sbjct: 340 KNIACSLSEMLECNQ 353

[Close]

BLAST of MS004981 vs. NCBI nr
Match: OMO72115.1 (Mitochodrial transcription termination factor-related protein [Corchorus capsularis])

HSP 1 Score: 474.6 bits (1220), Expect = 6.9e-130
Identity = 231/316 (73.10%), Postives = 269/316 (85.13%), Query Frame = 0


Query: 4   SAGQHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNIGIQERKLR 63
           +A     SSI+WFFR  GFDD+SI+EMF+KC+RLEG   E ASENW YLK+IGIQERKL 
Sbjct: 3   AASSQNGSSIMWFFRDKGFDDKSINEMFKKCKRLEGAQKERASENWSYLKSIGIQERKLP 62

Query: 64  NMVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAF 123
           ++VS+ PKILT  LN KLV MVECLATLG K  EVASAI +FP+++ HS+EEKLCPLLAF
Sbjct: 63  SVVSRCPKILTFGLNEKLVPMVECLATLGTKRREVASAIVRFPHIMSHSVEEKLCPLLAF 122

Query: 124 FQALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMG 183
           FQAL +PEKQLGKMILLNPRL+SYSI  KLTEIVDFLA+ GL +EGMIGKVL +YPF+MG
Sbjct: 123 FQALGVPEKQLGKMILLNPRLISYSIDSKLTEIVDFLATLGLAREGMIGKVLARYPFIMG 182

Query: 184 YSVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQI 243
           YSVDKRLRPT EFLKS+GL + DLQ VA+ +PEVLCRD NK+L+PNF +L+ CGF D QI
Sbjct: 183 YSVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVNKILKPNFAYLQQCGFGDRQI 242

Query: 244 VALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILE 303
            ALV+GYPPILIKSIK  LEPRI+FL+EVMGR+I+EVA YPD+FRHGLKKRLEL HK+L+
Sbjct: 243 AALVAGYPPILIKSIKNSLEPRIRFLVEVMGRQIDEVANYPDYFRHGLKKRLELRHKLLK 302

Query: 304 RNNIDCSLSEMLDCNQ 319
             +I CSLSEMLDCNQ
Sbjct: 303 EKDISCSLSEMLDCNQ 318

[Close]

BLAST of MS004981 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 419.5 bits (1077), Expect = 3.5e-116
Identity = 205/311 (65.92%), Postives = 256/311 (82.32%), Query Frame = 0


Query: 10  SSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNI-GIQERKLRNMVSK 69
           +SSI+WFFR  GFDD SI +M RKC++LE   ++ ASENW YL NI GIQERKL  +VS+
Sbjct: 6   TSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSR 65

Query: 70  YPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFFQALN 129
            PKILT+ L+ +L+ MVECL++LG  P EVASAI KFP +L HS+EEKLCPLLAFFQAL 
Sbjct: 66  CPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALG 125

Query: 130 IPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDK 189
           +PE QLGKMIL NPRL+SYSI  KLT IV FLAS GLD++GMIGKVLVK PFLMGYSVDK
Sbjct: 126 VPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDK 185

Query: 190 RLRPTLEFLK-SIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIVALV 249
           RLRPT EFLK S+GL +  +++V + +P++LCRD NK+L+PN+D+LK CGF D+QI  +V
Sbjct: 186 RLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMV 245

Query: 250 SGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILERNNI 309
           +GYP ILIKS+K  L+PRI+FL++VMGR ++EVA YP+FF HGLKK++E   K++++NNI
Sbjct: 246 TGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNNI 305

Query: 310 DCSLSEMLDCN 318
           DCSL EMLDCN
Sbjct: 306 DCSLREMLDCN 316

[Close]

BLAST of MS004981 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.4e-24
Identity = 80/308 (25.97%), Postives = 149/308 (48.38%), Query Frame = 0


Query: 11  SSILWFFRSNGFDDRSIHEMFRKC-RRLEGTHNETASENWYLKNIGIQERKLRNMVSKYP 70
           + I+ +  SNG     +  +  +C   L  +  E  S   +   +G+ +     MV  YP
Sbjct: 282 NEIVEYLESNGVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYP 341

Query: 71  KILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFFQALNIP 130
           KI+       +   +  L   G    EV   +A  P+++  S+EE+  PL+ +F  L IP
Sbjct: 342 KIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIP 401

Query: 131 EKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKRL 190
           ++ + +++++ P L    +   +   V FL   G+  E  IG +LVK+P L+  S+ K++
Sbjct: 402 KEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEA-IGNMLVKFPSLLTNSLYKKI 461

Query: 191 RPTLEFLKS-IGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIVALVSG 250
           RP + FL +  G+   D+  V    P +L       L PN  +  + G R  Q+  +++ 
Sbjct: 462 RPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIAD 521

Query: 251 YPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILERNNIDC 310
           +P +L  ++   L P+ ++L   M R ++++  +P FF + L++R+   H I+  N ++ 
Sbjct: 522 FPMLLRYNVDN-LRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNF 581

Query: 311 SLSEMLDC 317
            L  ML C
Sbjct: 582 KLRYMLAC 587

[Close]

BLAST of MS004981 vs. ExPASy Swiss-Prot
Match: Q9ZT96 (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-21
Identity = 63/269 (23.42%), Postives = 135/269 (50.19%), Query Frame = 0


Query: 50  YLKNIGIQERKLRNMVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLF 109
           YL+ + I+   +  ++ +YP++L   L G +   V  L  +G    E+   + ++P +L 
Sbjct: 221 YLQGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILG 280

Query: 110 HSMEEKLCPLLAFFQALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGM 169
             +   + PL+ + + L IP     ++I   P ++ + +   +   V  L  F + +E  
Sbjct: 281 MRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNV-RETS 340

Query: 170 IGKVLVKYPFLMGYSVDKRLRPTLEFL-KSIGLKDIDLQAVAVGYPEVLCRDANKVLRPN 229
           +  ++ +YP ++G  +  +L    + L  +I L   DL ++    P+ +    + +L+ +
Sbjct: 341 LPSIIAQYPEIIGIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLK-H 400

Query: 230 FDFLKNCGFRDAQIVALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRH 289
            DFL  CGF   Q   +V G P +L  ++  +++   ++  + M R ++++  +P FF +
Sbjct: 401 IDFLTKCGFSIDQTREMVIGCPQVLALNLG-IMKLSFEYFQKEMKRPLQDLVDFPAFFTY 460

Query: 290 GLKKRLELGHKILERNNIDCSLSEMLDCN 318
           GL+  ++  HK + +  I CSL+ ML+C+
Sbjct: 461 GLESTVKPRHKKIIKKGIKCSLAWMLNCS 486

[Close]

BLAST of MS004981 vs. ExPASy Swiss-Prot
Match: B6TGN4 (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.4e-21
Identity = 63/269 (23.42%), Postives = 134/269 (49.81%), Query Frame = 0


Query: 50  YLKNIGIQERKLRNMVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLF 109
           YL+ + ++   +  ++ +YP++L   L G +   V  L  +G    +V S I +FP VL 
Sbjct: 177 YLQGMDVRPTDVPRVLERYPELLGFKLEGTMSTSVAYLVGIGVGRRQVGSVITRFPEVLG 236

Query: 110 HSMEEKLCPLLAFFQALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGM 169
             + + + P +   + + +    + ++I   P ++ + +  K+   ++ L   G+ KE  
Sbjct: 237 MRVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVLGFGLQEKVKPNIEALVDIGVRKEA- 296

Query: 170 IGKVLVKYPFLMGYSV-DKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPN 229
           +  ++++YP ++G  + DK +     F  SI +   D   V    P+ +      VL+ +
Sbjct: 297 LASIVMQYPDVLGLELRDKLVAQQSLFESSILVSREDFGRVLERMPQAISLGRAAVLK-H 356

Query: 230 FDFLKNCGFRDAQIVALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRH 289
            +FL  CGF  +Q+  +V   P +L  +I  ++    ++    M R +EE+  +P FF +
Sbjct: 357 VNFLTACGFMLSQVSKMVVACPQLLALNID-IMRMNFEYFKNEMERDLEELVEFPAFFTY 416

Query: 290 GLKKRLELGHKILERNNIDCSLSEMLDCN 318
           G++  +   H+++ R  + CSL+ +L+C+
Sbjct: 417 GIESTVRPRHEMVSRKGLTCSLAWLLNCS 442

[Close]

BLAST of MS004981 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 9.4e-21
Identity = 62/269 (23.05%), Postives = 134/269 (49.81%), Query Frame = 0


Query: 50  YLKNIGIQERKLRNMVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLF 109
           YL+ + ++   +  ++ +YP++L   L G +   +  L  +G    +V S I +FP VL 
Sbjct: 186 YLQGMDVRPHDVPRVLERYPELLGFKLEGTMSTSIAYLVGIGVARRQVGSVITRFPEVLG 245

Query: 110 HSMEEKLCPLLAFFQALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGM 169
             + + + P +   + + +    + ++I   P ++ + +  K+   ++ L  FG+ KE  
Sbjct: 246 MRVGKIIKPFVEHLEGIGLQRLAIARIIEKKPYVLGFGLEDKVKPNIEALLEFGVRKEA- 305

Query: 170 IGKVLVKYPFLMGYSV-DKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPN 229
           +  ++ +YP ++G  + DK       F  SI +   D   V    P+ +      VL+ +
Sbjct: 306 LAFIVAQYPDILGIELRDKLATQQSLFESSILVSSEDFGRVIERMPQAISLGRTAVLK-H 365

Query: 230 FDFLKNCGFRDAQIVALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRH 289
            +FL +CGF  +Q+  +V   P +L  ++  +++   ++    M R +EE+  +P FF +
Sbjct: 366 VNFLTSCGFLLSQVSKMVVACPQLLALNMD-IMKMSFEYFQNEMERDLEELVEFPAFFTY 425

Query: 290 GLKKRLELGHKILERNNIDCSLSEMLDCN 318
           GL+  +   H+++ +    CSL+ +L+C+
Sbjct: 426 GLESTVRPRHEMVAKKGFTCSLAWLLNCS 451

[Close]

BLAST of MS004981 vs. ExPASy TrEMBL
Match: A0A6J1BSC3 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Herrania umbratica OX=108875 GN=LOC110429412 PE=3 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 3.0e-131
Identity = 233/314 (74.20%), Postives = 269/314 (85.67%), Query Frame = 0


Query: 5   AGQHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNIGIQERKLRN 64
           A     SSI+WFFR  GFDD+SI+EMFRKC+RL+G   ETASENW YLK+IGIQERKL +
Sbjct: 4   ASSQNGSSIMWFFRDKGFDDKSINEMFRKCKRLQGVQKETASENWAYLKSIGIQERKLPS 63

Query: 65  MVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFF 124
           +VS+ PKILT+ LN KLV MVECLATLG K HEVA AIA+FP+++ HS+EEKLCPLLAFF
Sbjct: 64  VVSRCPKILTLGLNEKLVPMVECLATLGTKRHEVAYAIARFPHIISHSVEEKLCPLLAFF 123

Query: 125 QALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGY 184
           QAL +PEKQLGKMILLNPRL+SYSI  KLTEIVDFLAS GL +EGMIGKVL KYPF+MGY
Sbjct: 124 QALGVPEKQLGKMILLNPRLISYSIESKLTEIVDFLASLGLTREGMIGKVLSKYPFIMGY 183

Query: 185 SVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIV 244
           SVDKRLRPT EFLKS+GL   DLQ VA+ +PEVLCRD +K+LRPNF +L+ CGF D QI 
Sbjct: 184 SVDKRLRPTSEFLKSVGLSGTDLQTVAMNFPEVLCRDVSKILRPNFAYLERCGFGDRQIA 243

Query: 245 ALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILER 304
           ALV+GYPP+LIKSIK  LEPRI+FL+EVMGR+IEEVA YPDFFRHGLKKRLEL H++L+ 
Sbjct: 244 ALVAGYPPVLIKSIKNSLEPRIRFLVEVMGRQIEEVANYPDFFRHGLKKRLELRHRLLKE 303

Query: 305 NNIDCSLSEMLDCN 318
            ++ CSLSEMLDCN
Sbjct: 304 KDVTCSLSEMLDCN 317

[Close]

BLAST of MS004981 vs. ExPASy TrEMBL
Match: A0A1R3KSP4 (Mitochodrial transcription termination factor-related protein OS=Corchorus olitorius OX=93759 GN=COLO4_04808 PE=3 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 8.8e-131
Identity = 231/316 (73.10%), Postives = 270/316 (85.44%), Query Frame = 0


Query: 4   SAGQHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNIGIQERKLR 63
           +A     SSI+WFFR  GFDD+SI+EMF+KC+RL+G   E ASENW YLK+IGIQERKL 
Sbjct: 3   AASSQNGSSIMWFFRDKGFDDKSINEMFKKCKRLQGAQKERASENWSYLKSIGIQERKLP 62

Query: 64  NMVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAF 123
           ++VS+ PKILT  LN KLV MVECLATLG K HEVASAI +FP+++ HS+EEKLCPLLAF
Sbjct: 63  SVVSRCPKILTFGLNEKLVPMVECLATLGTKRHEVASAIVRFPHIISHSVEEKLCPLLAF 122

Query: 124 FQALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMG 183
           FQAL +PEKQLGKMILLNPRL+SYSI  KLTEIVDFLA+ GL +EGMIGKVL +YPF+MG
Sbjct: 123 FQALGVPEKQLGKMILLNPRLISYSIDSKLTEIVDFLATLGLAREGMIGKVLARYPFIMG 182

Query: 184 YSVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQI 243
           YSVDKRLRPT EFLKS+GL + DLQ VA+ +PEVLCRD NK+L+PNF +L+ CGF D QI
Sbjct: 183 YSVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVNKILKPNFAYLQQCGFGDRQI 242

Query: 244 VALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILE 303
            ALV+GYPPILIKSIK  LEPRI+FL+EVMGR+I+EVA YPD+FRHGLKKRLEL HK+L+
Sbjct: 243 AALVAGYPPILIKSIKNSLEPRIRFLVEVMGRQIDEVANYPDYFRHGLKKRLELRHKLLK 302

Query: 304 RNNIDCSLSEMLDCNQ 319
             +I CSLSEMLDCNQ
Sbjct: 303 EKDISCSLSEMLDCNQ 318

[Close]

BLAST of MS004981 vs. ExPASy TrEMBL
Match: A0A1R3HP25 (Mitochodrial transcription termination factor-related protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_17938 PE=3 SV=1)

HSP 1 Score: 474.6 bits (1220), Expect = 3.3e-130
Identity = 231/316 (73.10%), Postives = 269/316 (85.13%), Query Frame = 0


Query: 4   SAGQHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNIGIQERKLR 63
           +A     SSI+WFFR  GFDD+SI+EMF+KC+RLEG   E ASENW YLK+IGIQERKL 
Sbjct: 3   AASSQNGSSIMWFFRDKGFDDKSINEMFKKCKRLEGAQKERASENWSYLKSIGIQERKLP 62

Query: 64  NMVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAF 123
           ++VS+ PKILT  LN KLV MVECLATLG K  EVASAI +FP+++ HS+EEKLCPLLAF
Sbjct: 63  SVVSRCPKILTFGLNEKLVPMVECLATLGTKRREVASAIVRFPHIMSHSVEEKLCPLLAF 122

Query: 124 FQALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMG 183
           FQAL +PEKQLGKMILLNPRL+SYSI  KLTEIVDFLA+ GL +EGMIGKVL +YPF+MG
Sbjct: 123 FQALGVPEKQLGKMILLNPRLISYSIDSKLTEIVDFLATLGLAREGMIGKVLARYPFIMG 182

Query: 184 YSVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQI 243
           YSVDKRLRPT EFLKS+GL + DLQ VA+ +PEVLCRD NK+L+PNF +L+ CGF D QI
Sbjct: 183 YSVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVNKILKPNFAYLQQCGFGDRQI 242

Query: 244 VALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILE 303
            ALV+GYPPILIKSIK  LEPRI+FL+EVMGR+I+EVA YPD+FRHGLKKRLEL HK+L+
Sbjct: 243 AALVAGYPPILIKSIKNSLEPRIRFLVEVMGRQIDEVANYPDYFRHGLKKRLELRHKLLK 302

Query: 304 RNNIDCSLSEMLDCNQ 319
             +I CSLSEMLDCNQ
Sbjct: 303 EKDISCSLSEMLDCNQ 318

[Close]

BLAST of MS004981 vs. ExPASy TrEMBL
Match: A0A061E9I9 (Mitochondrial transcription termination factor family protein OS=Theobroma cacao OX=3641 GN=TCM_007613 PE=3 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 4.4e-130
Identity = 231/314 (73.57%), Postives = 268/314 (85.35%), Query Frame = 0


Query: 5   AGQHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNIGIQERKLRN 64
           A     SSI+WFFR  GFDD+SI+EMFRKC+RL+G   E ASENW YLK+IGIQERKL +
Sbjct: 4   ASSQNGSSIMWFFRDKGFDDKSINEMFRKCKRLQGVQKERASENWAYLKSIGIQERKLPS 63

Query: 65  MVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFF 124
           +VS+ PKILT+ LN KLV MVECLATLG K HEVASAIA+FP+++ HS+EEKLCPLLAFF
Sbjct: 64  VVSRCPKILTLGLNEKLVPMVECLATLGTKRHEVASAIARFPHIISHSVEEKLCPLLAFF 123

Query: 125 QALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGY 184
           QAL +PEKQLGKMILLNPRL+SYSI  KLTEIVDFLA+ GL +EGMIGKVL KYPF+MGY
Sbjct: 124 QALGVPEKQLGKMILLNPRLISYSIESKLTEIVDFLATLGLTREGMIGKVLSKYPFIMGY 183

Query: 185 SVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIV 244
           SVDKRLRPT EFLKS+GL + DLQ VA+ +PEVLCRD  K+LRPNF +L+ CGF D +  
Sbjct: 184 SVDKRLRPTSEFLKSVGLSETDLQTVAMNFPEVLCRDVRKILRPNFAYLERCGFGDREKA 243

Query: 245 ALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILER 304
           ALV+GYPPILIKSIK  LEPRI+FL+EVMGR+IEEVA YPDFFRHGLKKRLEL H++L+ 
Sbjct: 244 ALVAGYPPILIKSIKNSLEPRIRFLVEVMGRQIEEVANYPDFFRHGLKKRLELRHRLLKE 303

Query: 305 NNIDCSLSEMLDCN 318
            ++ CSLSEMLDCN
Sbjct: 304 KDVTCSLSEMLDCN 317

[Close]

BLAST of MS004981 vs. ExPASy TrEMBL
Match: A0A7N2N0V2 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.3e-129
Identity = 231/315 (73.33%), Postives = 270/315 (85.71%), Query Frame = 0


Query: 5   AGQHGSSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNIGIQERKLRN 64
           + QHG SSI+WFFR  GFDD+SI EMF+KC+RLEG   E ASENW YLK+IGIQERKL +
Sbjct: 5   SSQHG-SSIMWFFRDRGFDDKSIDEMFKKCKRLEGAQRERASENWAYLKSIGIQERKLPS 64

Query: 65  MVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFF 124
           +VSK PKILT+ L+ KLV MVECL+TLG KPHEVASAI KFP++L HS+EEKLCPLLAFF
Sbjct: 65  IVSKCPKILTLGLHEKLVPMVECLSTLGTKPHEVASAIVKFPHILSHSVEEKLCPLLAFF 124

Query: 125 QALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGY 184
           QAL +PEKQLGKMILLNPRL+SYSI  KLTEI DFLAS GL ++GM+GKV+ K PF+MGY
Sbjct: 125 QALGVPEKQLGKMILLNPRLISYSIESKLTEIADFLASLGLARDGMVGKVMAKNPFIMGY 184

Query: 185 SVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIV 244
           SV+KRLRPT EFL+S+GL + DLQ VA+ +PEVLCRD NKVL+PN DFLK CGF D QI 
Sbjct: 185 SVEKRLRPTSEFLRSVGLTEHDLQTVAMNFPEVLCRDVNKVLKPNLDFLKRCGFGDGQIA 244

Query: 245 ALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILER 304
           ALV+G+PPILIKS++  LEPRIKFL+EVMGR+I+EV  YPDFFRHGLKKRLE  HK+L++
Sbjct: 245 ALVTGFPPILIKSVRNSLEPRIKFLVEVMGRQIDEVIDYPDFFRHGLKKRLESRHKLLKQ 304

Query: 305 NNIDCSLSEMLDCNQ 319
            NI CSLSEML+CNQ
Sbjct: 305 KNIACSLSEMLECNQ 318

[Close]

BLAST of MS004981 vs. TAIR 10
Match: AT4G38160.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 419.5 bits (1077), Expect = 2.5e-117
Identity = 205/311 (65.92%), Postives = 256/311 (82.32%), Query Frame = 0


Query: 10  SSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNI-GIQERKLRNMVSK 69
           +SSI+WFFR  GFDD SI +M RKC++LE   ++ ASENW YL NI GIQERKL  +VS+
Sbjct: 6   TSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSR 65

Query: 70  YPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFFQALN 129
            PKILT+ L+ +L+ MVECL++LG  P EVASAI KFP +L HS+EEKLCPLLAFFQAL 
Sbjct: 66  CPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALG 125

Query: 130 IPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDK 189
           +PE QLGKMIL NPRL+SYSI  KLT IV FLAS GLD++GMIGKVLVK PFLMGYSVDK
Sbjct: 126 VPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDK 185

Query: 190 RLRPTLEFLK-SIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIVALV 249
           RLRPT EFLK S+GL +  +++V + +P++LCRD NK+L+PN+D+LK CGF D+QI  +V
Sbjct: 186 RLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMV 245

Query: 250 SGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILERNNI 309
           +GYP ILIKS+K  L+PRI+FL++VMGR ++EVA YP+FF HGLKK++E   K++++NNI
Sbjct: 246 TGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNNI 305

Query: 310 DCSLSEMLDCN 318
           DCSL EMLDCN
Sbjct: 306 DCSLREMLDCN 316

[Close]

BLAST of MS004981 vs. TAIR 10
Match: AT4G38160.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 419.5 bits (1077), Expect = 2.5e-117
Identity = 205/311 (65.92%), Postives = 256/311 (82.32%), Query Frame = 0


Query: 10  SSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNI-GIQERKLRNMVSK 69
           +SSI+WFFR  GFDD SI +M RKC++LE   ++ ASENW YL NI GIQERKL  +VS+
Sbjct: 6   TSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSR 65

Query: 70  YPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFFQALN 129
            PKILT+ L+ +L+ MVECL++LG  P EVASAI KFP +L HS+EEKLCPLLAFFQAL 
Sbjct: 66  CPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALG 125

Query: 130 IPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDK 189
           +PE QLGKMIL NPRL+SYSI  KLT IV FLAS GLD++GMIGKVLVK PFLMGYSVDK
Sbjct: 126 VPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDK 185

Query: 190 RLRPTLEFLK-SIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIVALV 249
           RLRPT EFLK S+GL +  +++V + +P++LCRD NK+L+PN+D+LK CGF D+QI  +V
Sbjct: 186 RLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMV 245

Query: 250 SGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILERNNI 309
           +GYP ILIKS+K  L+PRI+FL++VMGR ++EVA YP+FF HGLKK++E   K++++NNI
Sbjct: 246 TGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNNI 305

Query: 310 DCSLSEMLDCN 318
           DCSL EMLDCN
Sbjct: 306 DCSLREMLDCN 316

[Close]

BLAST of MS004981 vs. TAIR 10
Match: AT4G38160.3 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 419.5 bits (1077), Expect = 2.5e-117
Identity = 205/311 (65.92%), Postives = 256/311 (82.32%), Query Frame = 0


Query: 10  SSSILWFFRSNGFDDRSIHEMFRKCRRLEGTHNETASENW-YLKNI-GIQERKLRNMVSK 69
           +SSI+WFFR  GFDD SI +M RKC++LE   ++ ASENW YL NI GIQERKL  +VS+
Sbjct: 6   TSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVSR 65

Query: 70  YPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFFQALN 129
            PKILT+ L+ +L+ MVECL++LG  P EVASAI KFP +L HS+EEKLCPLLAFFQAL 
Sbjct: 66  CPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALG 125

Query: 130 IPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDK 189
           +PE QLGKMIL NPRL+SYSI  KLT IV FLAS GLD++GMIGKVLVK PFLMGYSVDK
Sbjct: 126 VPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVDK 185

Query: 190 RLRPTLEFLK-SIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIVALV 249
           RLRPT EFLK S+GL +  +++V + +P++LCRD NK+L+PN+D+LK CGF D+QI  +V
Sbjct: 186 RLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMV 245

Query: 250 SGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILERNNI 309
           +GYP ILIKS+K  L+PRI+FL++VMGR ++EVA YP+FF HGLKK++E   K++++NNI
Sbjct: 246 TGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNNI 305

Query: 310 DCSLSEMLDCN 318
           DCSL EMLDCN
Sbjct: 306 DCSLREMLDCN 316

[Close]

BLAST of MS004981 vs. TAIR 10
Match: AT1G78930.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-27
Identity = 74/267 (27.72%), Postives = 137/267 (51.31%), Query Frame = 0


Query: 51  LKNIGIQERKLRNMVSKYPKILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFH 110
           ++ + +  +    ++ KYP IL+  +      +     +      ++  AI ++P +L  
Sbjct: 307 MEKVSVVNKDSGKLLLKYPWILSPSIQENYSHIGSFFYSESVLKMDIDHAIRRWPLLLGC 366

Query: 111 SMEEKLCPLLAFFQALNIPEKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMI 170
           S    +  ++  F  L + +K++GK+I   P+L+      +  ++V FL   G  KE ++
Sbjct: 367 S-ASNMEMMVKEFDKLGVRDKRMGKVIPKMPQLLLCK-PQEFLKVVCFLEDLGFQKE-IV 426

Query: 171 GKVLVKYPFLMGYSVDKRLRPTLEFLKSIGLKDIDLQAVAVGYPEVLCRDANKVLRPNFD 230
           G++L + P + G S++K L+  L FL   G+       +   YPE L  DA+K + P   
Sbjct: 427 GQILCRCPEIFGCSIEKTLQKKLIFLTRFGVSTTHFPRIIKKYPEFLIYDADKTVLPRLK 486

Query: 231 FLKNCGFRDAQIVALVSGYPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGL 290
           +L   G  + +I  ++  + PIL  SI  VL P+ +FL+  M + + EV  YP +F + L
Sbjct: 487 YLMEIGISEREIAFMIRKFSPILGYSIDKVLRPKFEFLVNSMEKPVREVIEYPRYFSYSL 546

Query: 291 KKRLELGHKILERNNIDCSLSEMLDCN 318
           +KR++   ++L+  NI+C+L EML  N
Sbjct: 547 EKRIKPRFRVLKGRNIECTLQEMLGKN 570

[Close]

BLAST of MS004981 vs. TAIR 10
Match: AT2G21710.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 115.2 bits (287), Expect = 9.9e-26
Identity = 80/308 (25.97%), Postives = 149/308 (48.38%), Query Frame = 0


Query: 11  SSILWFFRSNGFDDRSIHEMFRKC-RRLEGTHNETASENWYLKNIGIQERKLRNMVSKYP 70
           + I+ +  SNG     +  +  +C   L  +  E  S   +   +G+ +     MV  YP
Sbjct: 282 NEIVEYLESNGVRRDWMGYVVGRCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYP 341

Query: 71  KILTICLNGKLVLMVECLATLGNKPHEVASAIAKFPYVLFHSMEEKLCPLLAFFQALNIP 130
           KI+       +   +  L   G    EV   +A  P+++  S+EE+  PL+ +F  L IP
Sbjct: 342 KIIGFFSFQVMEKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIP 401

Query: 131 EKQLGKMILLNPRLVSYSIVPKLTEIVDFLASFGLDKEGMIGKVLVKYPFLMGYSVDKRL 190
           ++ + +++++ P L    +   +   V FL   G+  E  IG +LVK+P L+  S+ K++
Sbjct: 402 KEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEA-IGNMLVKFPSLLTNSLYKKI 461

Query: 191 RPTLEFLKS-IGLKDIDLQAVAVGYPEVLCRDANKVLRPNFDFLKNCGFRDAQIVALVSG 250
           RP + FL +  G+   D+  V    P +L       L PN  +  + G R  Q+  +++ 
Sbjct: 462 RPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIAD 521

Query: 251 YPPILIKSIKYVLEPRIKFLIEVMGRRIEEVAGYPDFFRHGLKKRLELGHKILERNNIDC 310
           +P +L  ++   L P+ ++L   M R ++++  +P FF + L++R+   H I+  N ++ 
Sbjct: 522 FPMLLRYNVDN-LRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNF 581

Query: 311 SLSEMLDC 317
            L  ML C
Sbjct: 582 KLRYMLAC 587

The following BLAST results are available for this feature:

BLAST of MS004981 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744171.1	1.9e-132	77.00	LOW QUALITY PROTEIN: transcription termination factor MTERF6, chloroplastic/mito...	[more]
XP_021301114.1	6.3e-131	74.20	transcription termination factor MTERF6, chloroplastic/mitochondrial [Herrania u...	[more]
OMP10113.1	1.8e-130	73.10	Mitochodrial transcription termination factor-related protein [Corchorus olitori...	[more]
KAF3951193.1	6.9e-130	73.33	hypothetical protein CMV_023131 [Castanea mollissima]	[more]
OMO72115.1	6.9e-130	73.10	Mitochodrial transcription termination factor-related protein [Corchorus capsula...	[more]

BLAST of MS004981 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	3.5e-116	65.92	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
F4IHL3	1.4e-24	25.97	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9ZT96	1.1e-21	23.42	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana O...	[more]
B6TGN4	9.4e-21	23.42	Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MT...	[more]
Q6AUK6	9.4e-21	23.05	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]

BLAST of MS004981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSC3	3.0e-131	74.20	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Herrania...	[more]
A0A1R3KSP4	8.8e-131	73.10	Mitochodrial transcription termination factor-related protein OS=Corchorus olito...	[more]
A0A1R3HP25	3.3e-130	73.10	Mitochodrial transcription termination factor-related protein OS=Corchorus capsu...	[more]
A0A061E9I9	4.4e-130	73.57	Mitochondrial transcription termination factor family protein OS=Theobroma cacao...	[more]
A0A7N2N0V2	1.3e-129	73.33	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]

BLAST of MS004981 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38160.1	2.5e-117	65.92	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.2	2.5e-117	65.92	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.3	2.5e-117	65.92	Mitochondrial transcription termination factor family protein	[more]
AT1G78930.1	1.1e-27	27.72	Mitochondrial transcription termination factor family protein	[more]
AT2G21710.1	9.9e-26	25.97	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 243..275 e-value: 0.87 score: 18.6 coord: 207..238 e-value: 0.09 score: 21.9 coord: 98..129 e-value: 0.011 score: 24.9 coord: 62..93 e-value: 110.0 score: 11.2 coord: 171..202 e-value: 6.5E-8 score: 42.3 coord: 276..307 e-value: 440.0 score: 6.6 coord: 134..165 e-value: 0.023 score: 23.9
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 15..318 e-value: 1.6E-52 score: 178.4
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 12..318
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 82..318 e-value: 3.0E-47 score: 163.0
None	No IPR available	PANTHER	PTHR13068:SF5	TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 12..318

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004981.1	MS004981.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding