MS004934 (gene) Bitter gourd (TR) v1

Overview


Name	MS004934
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	late embryogenesis abundant protein M17-like
Location	scaffold176: 1521765 .. 1521884 (+)
RNA-Seq Expression	MS004934
Synteny	MS004934

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGAAAATTCAGTAGAAGAATCAAAGCAGCGTTGTCGCTACGGATGCTGTCGCTATGATCCATATCGTCGTCGTTGCATCAGATGTTGTCCTCCCCGTGCAGAAGCGCAGGCCACCGCC

mRNA sequence

AATGAAAATTCAGTAGAAGAATCAAAGCAGCGTTGTCGCTACGGATGCTGTCGCTATGATCCATATCGTCGTCGTTGCATCAGATGTTGTCCTCCCCGTGCAGAAGCGCAGGCCACCGCC

Coding sequence (CDS)

AATGAAAATTCAGTAGAAGAATCAAAGCAGCGTTGTCGCTACGGATGCTGTCGCTATGATCCATATCGTCGTCGTTGCATCAGATGTTGTCCTCCCCGTGCAGAAGCGCAGGCCACCGCC

Protein sequence

NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPRAEAQATA

Homology

[Close]

BLAST of MS004934 vs. NCBI nr
Match: XP_022140624.1 (late embryogenesis abundant protein M17-like [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-06
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1   NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPRAEAQAT 40
           NEN VEESKQRCRYGCCR+D   RRC+RCC   AE +AT
Sbjct: 84  NENPVEESKQRCRYGCCRFD--GRRCVRCCRGPAEVEAT 120

[Close]

BLAST of MS004934 vs. NCBI nr
Match: XP_022140309.1 (uncharacterized protein LOC111011011 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 8.7e-06
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 1   NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPR-AEAQATA 41
           N N +EESKQRCR+GCC + P  RRCI CCP R  EAQATA
Sbjct: 85  NGNPIEESKQRCRFGCCGFHPISRRCISCCPRRPTEAQATA 125

[Close]

BLAST of MS004934 vs. NCBI nr
Match: XP_022140570.1 (late embryogenesis abundant protein M17-like isoform X3 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1   NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPRAEAQAT 40
           NEN VEESKQRCRYGCCR+D   RRC+RCC   AE +AT
Sbjct: 85  NENPVEESKQRCRYGCCRFD--GRRCVRCCRGPAEEEAT 121

[Close]

BLAST of MS004934 vs. NCBI nr
Match: XP_022140569.1 (late embryogenesis abundant protein M17-like isoform X2 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1   NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPRAEAQAT 40
           NEN VEESKQRCRYGCCR+D   RRC+RCC   AE +AT
Sbjct: 85  NENPVEESKQRCRYGCCRFD--GRRCVRCCRGPAEEEAT 121

[Close]

BLAST of MS004934 vs. NCBI nr
Match: XP_022140567.1 (late embryogenesis abundant protein M17-like isoform X1 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPRAEAQAT 40
          NEN VEESKQRCRYGCCR+D   RRC+RCC   AE +AT
Sbjct: 37 NENPVEESKQRCRYGCCRFD--GRRCVRCCRGPAEEEAT 73

[Close]

BLAST of MS004934 vs. ExPASy TrEMBL
Match: A0A6J1CFC0 (uncharacterized protein LOC111011011 OS=Momordica charantia OX=3673 GN=LOC111011011 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-06
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 1   NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPR-AEAQATA 41
           N N +EESKQRCR+GCC + P  RRCI CCP R  EAQATA
Sbjct: 85  NGNPIEESKQRCRFGCCGFHPISRRCISCCPRRPTEAQATA 125

[Close]

BLAST of MS004934 vs. ExPASy TrEMBL
Match: A0A6J1CG70 (late embryogenesis abundant protein M17-like OS=Momordica charantia OX=3673 GN=LOC111011234 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-06
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1   NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPRAEAQAT 40
           NEN VEESKQRCRYGCCR+D   RRC+RCC   AE +AT
Sbjct: 84  NENPVEESKQRCRYGCCRFD--GRRCVRCCRGPAEVEAT 120

[Close]

BLAST of MS004934 vs. ExPASy TrEMBL
Match: A0A6J1CHC2 (late embryogenesis abundant protein M17-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011193 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1  NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPRAEAQAT 40
          NEN VEESKQRCRYGCCR+D   RRC+RCC   AE +AT
Sbjct: 37 NENPVEESKQRCRYGCCRFD--GRRCVRCCRGPAEEEAT 73

[Close]

BLAST of MS004934 vs. ExPASy TrEMBL
Match: A0A6J1CG20 (late embryogenesis abundant protein M17-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011193 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1   NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPRAEAQAT 40
           NEN VEESKQRCRYGCCR+D   RRC+RCC   AE +AT
Sbjct: 85  NENPVEESKQRCRYGCCRFD--GRRCVRCCRGPAEEEAT 121

[Close]

BLAST of MS004934 vs. ExPASy TrEMBL
Match: A0A6J1CFE1 (late embryogenesis abundant protein M17-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011193 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.5e-06
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 1   NENSVEESKQRCRYGCCRYDPYRRRCIRCCPPRAEAQAT 40
           NEN VEESKQRCRYGCCR+D   RRC+RCC   AE +AT
Sbjct: 85  NENPVEESKQRCRYGCCRFD--GRRCVRCCRGPAEEEAT 121

The following BLAST results are available for this feature:

BLAST of MS004934 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140624.1	8.7e-06	71.79	late embryogenesis abundant protein M17-like [Momordica charantia]	[more]
XP_022140309.1	8.7e-06	68.29	uncharacterized protein LOC111011011 [Momordica charantia]	[more]
XP_022140570.1	1.1e-05	71.79	late embryogenesis abundant protein M17-like isoform X3 [Momordica charantia]	[more]
XP_022140569.1	1.1e-05	71.79	late embryogenesis abundant protein M17-like isoform X2 [Momordica charantia]	[more]
XP_022140567.1	1.1e-05	71.79	late embryogenesis abundant protein M17-like isoform X1 [Momordica charantia]	[more]

BLAST of MS004934 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS004934 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CFC0	4.2e-06	68.29	uncharacterized protein LOC111011011 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1CG70	4.2e-06	71.79	late embryogenesis abundant protein M17-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1CHC2	5.5e-06	71.79	late embryogenesis abundant protein M17-like isoform X1 OS=Momordica charantia O...	[more]
A0A6J1CG20	5.5e-06	71.79	late embryogenesis abundant protein M17-like isoform X2 OS=Momordica charantia O...	[more]
A0A6J1CFE1	5.5e-06	71.79	late embryogenesis abundant protein M17-like isoform X3 OS=Momordica charantia O...	[more]

BLAST of MS004934 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004934.1	MS004934.1	mRNA