Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTCGTTTGGAGGGGAAAACAATAAACAACAAGCTGCACAAGACACCAATTCCGACAGGCAGCACAACCAAGAGCTCCCTTGTTTCATCCGATGGCGTGGGATAGAAACACTTAACCACATTCTCGTCGAACAGAGCAACAGCTACAAAAACCAGCAGAGAAGCGAAGGCGTGGAAGAAATCGATGAACCGAAGCCTGTATTTGGCAGCCTCTTCATCAGGAAGAGTGACAGAGGCATCAATGATCCACAAGCCTCGAAACGTGGCGACCCCATATCGGACTTTGCCTCGTTCGTCCCGAAAACTGTCGGTGAAGAGGAGGAAAAAACAGGAGAAGGCGCAGAGGGAGACAAGGCCAAGTGTGGTGGATTGGCTGACCTTGGT
mRNA sequence
GTGTCGTTTGGAGGGGAAAACAATAAACAACAAGCTGCACAAGACACCAATTCCGACAGGCAGCACAACCAAGAGCTCCCTTGTTTCATCCGATGGCGTGGGATAGAAACACTTAACCACATTCTCGTCGAACAGAGCAACAGCTACAAAAACCAGCAGAGAAGCGAAGGCGTGGAAGAAATCGATGAACCGAAGCCTGTATTTGGCAGCCTCTTCATCAGGAAGAGTGACAGAGGCATCAATGATCCACAAGCCTCGAAACGTGGCGACCCCATATCGGACTTTGCCTCGTTCGTCCCGAAAACTGTCGGTGAAGAGGAGGAAAAAACAGGAGAAGGCGCAGAGGGAGACAAGGCCAAGTGTGGTGGATTGGCTGACCTTGGT
Coding sequence (CDS)
GTGTCGTTTGGAGGGGAAAACAATAAACAACAAGCTGCACAAGACACCAATTCCGACAGGCAGCACAACCAAGAGCTCCCTTGTTTCATCCGATGGCGTGGGATAGAAACACTTAACCACATTCTCGTCGAACAGAGCAACAGCTACAAAAACCAGCAGAGAAGCGAAGGCGTGGAAGAAATCGATGAACCGAAGCCTGTATTTGGCAGCCTCTTCATCAGGAAGAGTGACAGAGGCATCAATGATCCACAAGCCTCGAAACGTGGCGACCCCATATCGGACTTTGCCTCGTTCGTCCCGAAAACTGTCGGTGAAGAGGAGGAAAAAACAGGAGAAGGCGCAGAGGGAGACAAGGCCAAGTGTGGTGGATTGGCTGACCTTGGT
Protein sequence
VSFGGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDEPKPVFGSLFIRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAKCGGLADLG
Homology
BLAST of MS004924 vs. NCBI nr
Match:
PON97835.1 (hypothetical protein TorRG33x02_064250 [Trema orientale])
HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 0
Query: 6 ENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDEPK 65
E NK+QAA D DR +++L C + R E L+HIL+E+ + +N+QR + V+EI PK
Sbjct: 6 ERNKEQAAHDAYCDRHRHEKLLCLLGRRRTEALDHILIERHHRRENEQRRQRVDEIHSPK 65
Query: 66 PVFGSLFIRK---SDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAKCG 125
PV G L R S R ++DPQAS+RGDPI+D A+ VP VGE EE+ G GA G++AK G
Sbjct: 66 PVLGGLLGRNDRVSRRAVDDPQASERGDPIADLAAVVPTAVGEAEEEAGGGATGEEAKSG 125
Query: 126 GLADLG 129
G A G
Sbjct: 126 GPAHGG 131
BLAST of MS004924 vs. NCBI nr
Match:
PON44448.1 (hypothetical protein PanWU01x14_266830 [Parasponia andersonii])
HSP 1 Score: 111.7 bits (278), Expect = 4.7e-21
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 0
Query: 6 ENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDEPK 65
E NK+QAA D DR +++L + W+ E L+HIL+E+ + +N+QR + V+EI PK
Sbjct: 6 ERNKEQAAHDAYCDRHRHKKLLRLLGWQRTEALDHILIERRHRRENEQRRQRVDEIHSPK 65
Query: 66 PVFGSLFIRKS---DRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAKCG 125
P+ G L R R ++DPQAS+RGDPI+D A+ VP VGE EE+ G GA G++AK G
Sbjct: 66 PILGGLLGRNDRVRRRAVDDPQASERGDPIADLATVVPTAVGEAEEEAGGGATGEEAKSG 125
Query: 126 GLADLG 129
G A G
Sbjct: 126 GPAHGG 131
BLAST of MS004924 vs. NCBI nr
Match:
PON60637.1 (hypothetical protein TorRG33x02_284420 [Trema orientale])
HSP 1 Score: 88.2 bits (217), Expect = 5.6e-14
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 0
Query: 1 VSFGGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEE 60
V+ GG+N+KQ DTN +RQ + L IR R I+ +HIL++QSN K++ + + E
Sbjct: 29 VALGGKNDKQHTTNDTNPNRQRRKNLLSLIRRRWIKATHHILIKQSNGRKHEYGHQSMHE 88
Query: 61 IDEPKPVFGSLFIRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAK 120
ID+ + SL R+ ++ PQ S RG+ I+ + VPKT+ E E+K G A+ KA+
Sbjct: 89 IDKLHTILRSLLRRERGGAVDHPQPSPRGETIAHISVLVPKTIREAEQKRGRSAQSHKAR 148
BLAST of MS004924 vs. NCBI nr
Match:
VFQ84097.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 82.8 bits (203), Expect = 2.4e-12
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 0
Query: 1 VSFGGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEE 60
++F GE N++ A N+ RQ+ Q+L R R ++T++ +LV+Q +N+ +GVEE
Sbjct: 1 MAFAGERNEKNATHKPNARRQNRQKLLRLRRRRRVQTVHDVLVQQRRGGENKDGVDGVEE 60
Query: 61 IDEPKPVFGSLF--IRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDK 120
I FG L R R + D ++ +RG+ ++DF+ VP+ VGE E++ G GA G++
Sbjct: 61 IQHRYSPFGRLVGGNRGGGRQVEDEESPERGEGVTDFSPLVPEAVGETEDEAGRGASGEE 120
Query: 121 AKCGGLADLG 129
GLAD G
Sbjct: 121 RHRQGLADGG 130
BLAST of MS004924 vs. NCBI nr
Match:
CAG1854294.1 (unnamed protein product [Musa acuminata subsp. malaccensis])
HSP 1 Score: 81.3 bits (199), Expect = 6.9e-12
Identity = 45/117 (38.46%), Postives = 72/117 (61.54%), Query Frame = 0
Query: 4 GGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDE 63
GGE+++Q AA+++N DRQ ++L + + +H+LVEQ + ++ QR EG+EE+
Sbjct: 68 GGESDEQSAAENSNPDRQRCEDLKLDVGGHRVVARDHVLVEQRHRREHHQRREGMEEVQR 127
Query: 64 PKPVFGSLFIRKSDRGINDPQASKRGDPIS-DFASFVPKTVGEEEEKTGEGAEGDKA 120
P+ V R + ++DPQA +RG ++ FV + VGE EE+ GEGAEG +A
Sbjct: 128 PQSVAHGQLRRYRLQAVDDPQAPERGHAVAHPPGCFVVEAVGEAEEEAGEGAEGQEA 184
BLAST of MS004924 vs. ExPASy TrEMBL
Match:
A0A2P5FJ60 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_064250 PE=4 SV=1)
HSP 1 Score: 114.8 bits (286), Expect = 2.7e-22
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 0
Query: 6 ENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDEPK 65
E NK+QAA D DR +++L C + R E L+HIL+E+ + +N+QR + V+EI PK
Sbjct: 6 ERNKEQAAHDAYCDRHRHEKLLCLLGRRRTEALDHILIERHHRRENEQRRQRVDEIHSPK 65
Query: 66 PVFGSLFIRK---SDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAKCG 125
PV G L R S R ++DPQAS+RGDPI+D A+ VP VGE EE+ G GA G++AK G
Sbjct: 66 PVLGGLLGRNDRVSRRAVDDPQASERGDPIADLAAVVPTAVGEAEEEAGGGATGEEAKSG 125
Query: 126 GLADLG 129
G A G
Sbjct: 126 GPAHGG 131
BLAST of MS004924 vs. ExPASy TrEMBL
Match:
A0A2P5B6P1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 0
Query: 6 ENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDEPK 65
E NK+QAA D DR +++L + W+ E L+HIL+E+ + +N+QR + V+EI PK
Sbjct: 6 ERNKEQAAHDAYCDRHRHKKLLRLLGWQRTEALDHILIERRHRRENEQRRQRVDEIHSPK 65
Query: 66 PVFGSLFIRKS---DRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAKCG 125
P+ G L R R ++DPQAS+RGDPI+D A+ VP VGE EE+ G GA G++AK G
Sbjct: 66 PILGGLLGRNDRVRRRAVDDPQASERGDPIADLATVVPTAVGEAEEEAGGGATGEEAKSG 125
Query: 126 GLADLG 129
G A G
Sbjct: 126 GPAHGG 131
BLAST of MS004924 vs. ExPASy TrEMBL
Match:
A0A0A0KK92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 45/116 (38.79%), Postives = 73/116 (62.93%), Query Frame = 0
Query: 4 GGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDE 63
G ++NKQ + N +RQ Q L IRWR ++T++HIL++QSNS +NQ R E ++EI++
Sbjct: 4 GRKSNKQHTTKHPNCNRQRRQNLLRLIRWRRVKTVHHILIKQSNSRENQNRHESMQEINK 63
Query: 64 PKPVFGSLFIRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKA 120
P+P+ RK ++DPQAS+ G+ I + V +T+ E ++T + E +KA
Sbjct: 64 PQPITSRDGRRKFHGAVDDPQASESGESIGNIPLTVSETISETLKETRQSTESNKA 119
BLAST of MS004924 vs. ExPASy TrEMBL
Match:
A0A2P5CHX1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_284420 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 0
Query: 1 VSFGGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEE 60
V+ GG+N+KQ DTN +RQ + L IR R I+ +HIL++QSN K++ + + E
Sbjct: 29 VALGGKNDKQHTTNDTNPNRQRRKNLLSLIRRRWIKATHHILIKQSNGRKHEYGHQSMHE 88
Query: 61 IDEPKPVFGSLFIRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAK 120
ID+ + SL R+ ++ PQ S RG+ I+ + VPKT+ E E+K G A+ KA+
Sbjct: 89 IDKLHTILRSLLRRERGGAVDHPQPSPRGETIAHISVLVPKTIREAEQKRGRSAQSHKAR 148
BLAST of MS004924 vs. ExPASy TrEMBL
Match:
A0A484M656 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS25873 PE=4 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 0
Query: 1 VSFGGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEE 60
++F GE N++ A N+ RQ+ Q+L R R ++T++ +LV+Q +N+ +GVEE
Sbjct: 1 MAFAGERNEKNATHKPNARRQNRQKLLRLRRRRRVQTVHDVLVQQRRGGENKDGVDGVEE 60
Query: 61 IDEPKPVFGSLF--IRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDK 120
I FG L R R + D ++ +RG+ ++DF+ VP+ VGE E++ G GA G++
Sbjct: 61 IQHRYSPFGRLVGGNRGGGRQVEDEESPERGEGVTDFSPLVPEAVGETEDEAGRGASGEE 120
Query: 121 AKCGGLADLG 129
GLAD G
Sbjct: 121 RHRQGLADGG 130
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
PON97835.1 | 5.6e-22 | 49.21 | hypothetical protein TorRG33x02_064250 [Trema orientale] | [more] |
PON44448.1 | 4.7e-21 | 46.83 | hypothetical protein PanWU01x14_266830 [Parasponia andersonii] | [more] |
PON60637.1 | 5.6e-14 | 38.33 | hypothetical protein TorRG33x02_284420 [Trema orientale] | [more] |
VFQ84097.1 | 2.4e-12 | 36.15 | unnamed protein product [Cuscuta campestris] | [more] |
CAG1854294.1 | 6.9e-12 | 38.46 | unnamed protein product [Musa acuminata subsp. malaccensis] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A2P5FJ60 | 2.7e-22 | 49.21 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_064250 PE=4 SV... | [more] |
A0A2P5B6P1 | 2.3e-21 | 46.83 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE... | [more] |
A0A0A0KK92 | 2.7e-14 | 38.79 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1 | [more] |
A0A2P5CHX1 | 2.7e-14 | 38.33 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_284420 PE=4 SV... | [more] |
A0A484M656 | 1.1e-12 | 36.15 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS25873 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |