MS004924 (gene) Bitter gourd (TR) v1

Overview
NameMS004924
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold176: 1457727 .. 1458110 (-)
RNA-Seq ExpressionMS004924
SyntenyMS004924
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTCGTTTGGAGGGGAAAACAATAAACAACAAGCTGCACAAGACACCAATTCCGACAGGCAGCACAACCAAGAGCTCCCTTGTTTCATCCGATGGCGTGGGATAGAAACACTTAACCACATTCTCGTCGAACAGAGCAACAGCTACAAAAACCAGCAGAGAAGCGAAGGCGTGGAAGAAATCGATGAACCGAAGCCTGTATTTGGCAGCCTCTTCATCAGGAAGAGTGACAGAGGCATCAATGATCCACAAGCCTCGAAACGTGGCGACCCCATATCGGACTTTGCCTCGTTCGTCCCGAAAACTGTCGGTGAAGAGGAGGAAAAAACAGGAGAAGGCGCAGAGGGAGACAAGGCCAAGTGTGGTGGATTGGCTGACCTTGGT

mRNA sequence

GTGTCGTTTGGAGGGGAAAACAATAAACAACAAGCTGCACAAGACACCAATTCCGACAGGCAGCACAACCAAGAGCTCCCTTGTTTCATCCGATGGCGTGGGATAGAAACACTTAACCACATTCTCGTCGAACAGAGCAACAGCTACAAAAACCAGCAGAGAAGCGAAGGCGTGGAAGAAATCGATGAACCGAAGCCTGTATTTGGCAGCCTCTTCATCAGGAAGAGTGACAGAGGCATCAATGATCCACAAGCCTCGAAACGTGGCGACCCCATATCGGACTTTGCCTCGTTCGTCCCGAAAACTGTCGGTGAAGAGGAGGAAAAAACAGGAGAAGGCGCAGAGGGAGACAAGGCCAAGTGTGGTGGATTGGCTGACCTTGGT

Coding sequence (CDS)

GTGTCGTTTGGAGGGGAAAACAATAAACAACAAGCTGCACAAGACACCAATTCCGACAGGCAGCACAACCAAGAGCTCCCTTGTTTCATCCGATGGCGTGGGATAGAAACACTTAACCACATTCTCGTCGAACAGAGCAACAGCTACAAAAACCAGCAGAGAAGCGAAGGCGTGGAAGAAATCGATGAACCGAAGCCTGTATTTGGCAGCCTCTTCATCAGGAAGAGTGACAGAGGCATCAATGATCCACAAGCCTCGAAACGTGGCGACCCCATATCGGACTTTGCCTCGTTCGTCCCGAAAACTGTCGGTGAAGAGGAGGAAAAAACAGGAGAAGGCGCAGAGGGAGACAAGGCCAAGTGTGGTGGATTGGCTGACCTTGGT

Protein sequence

VSFGGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDEPKPVFGSLFIRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAKCGGLADLG
Homology
BLAST of MS004924 vs. NCBI nr
Match: PON97835.1 (hypothetical protein TorRG33x02_064250 [Trema orientale])

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 0

Query: 6   ENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDEPK 65
           E NK+QAA D   DR  +++L C +  R  E L+HIL+E+ +  +N+QR + V+EI  PK
Sbjct: 6   ERNKEQAAHDAYCDRHRHEKLLCLLGRRRTEALDHILIERHHRRENEQRRQRVDEIHSPK 65

Query: 66  PVFGSLFIRK---SDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAKCG 125
           PV G L  R    S R ++DPQAS+RGDPI+D A+ VP  VGE EE+ G GA G++AK G
Sbjct: 66  PVLGGLLGRNDRVSRRAVDDPQASERGDPIADLAAVVPTAVGEAEEEAGGGATGEEAKSG 125

Query: 126 GLADLG 129
           G A  G
Sbjct: 126 GPAHGG 131

BLAST of MS004924 vs. NCBI nr
Match: PON44448.1 (hypothetical protein PanWU01x14_266830 [Parasponia andersonii])

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-21
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 0

Query: 6   ENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDEPK 65
           E NK+QAA D   DR  +++L   + W+  E L+HIL+E+ +  +N+QR + V+EI  PK
Sbjct: 6   ERNKEQAAHDAYCDRHRHKKLLRLLGWQRTEALDHILIERRHRRENEQRRQRVDEIHSPK 65

Query: 66  PVFGSLFIRKS---DRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAKCG 125
           P+ G L  R      R ++DPQAS+RGDPI+D A+ VP  VGE EE+ G GA G++AK G
Sbjct: 66  PILGGLLGRNDRVRRRAVDDPQASERGDPIADLATVVPTAVGEAEEEAGGGATGEEAKSG 125

Query: 126 GLADLG 129
           G A  G
Sbjct: 126 GPAHGG 131

BLAST of MS004924 vs. NCBI nr
Match: PON60637.1 (hypothetical protein TorRG33x02_284420 [Trema orientale])

HSP 1 Score: 88.2 bits (217), Expect = 5.6e-14
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 0

Query: 1   VSFGGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEE 60
           V+ GG+N+KQ    DTN +RQ  + L   IR R I+  +HIL++QSN  K++   + + E
Sbjct: 29  VALGGKNDKQHTTNDTNPNRQRRKNLLSLIRRRWIKATHHILIKQSNGRKHEYGHQSMHE 88

Query: 61  IDEPKPVFGSLFIRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAK 120
           ID+   +  SL  R+    ++ PQ S RG+ I+  +  VPKT+ E E+K G  A+  KA+
Sbjct: 89  IDKLHTILRSLLRRERGGAVDHPQPSPRGETIAHISVLVPKTIREAEQKRGRSAQSHKAR 148

BLAST of MS004924 vs. NCBI nr
Match: VFQ84097.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-12
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 1   VSFGGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEE 60
           ++F GE N++ A    N+ RQ+ Q+L    R R ++T++ +LV+Q    +N+   +GVEE
Sbjct: 1   MAFAGERNEKNATHKPNARRQNRQKLLRLRRRRRVQTVHDVLVQQRRGGENKDGVDGVEE 60

Query: 61  IDEPKPVFGSLF--IRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDK 120
           I      FG L    R   R + D ++ +RG+ ++DF+  VP+ VGE E++ G GA G++
Sbjct: 61  IQHRYSPFGRLVGGNRGGGRQVEDEESPERGEGVTDFSPLVPEAVGETEDEAGRGASGEE 120

Query: 121 AKCGGLADLG 129
               GLAD G
Sbjct: 121 RHRQGLADGG 130

BLAST of MS004924 vs. NCBI nr
Match: CAG1854294.1 (unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 81.3 bits (199), Expect = 6.9e-12
Identity = 45/117 (38.46%), Postives = 72/117 (61.54%), Query Frame = 0

Query: 4   GGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDE 63
           GGE+++Q AA+++N DRQ  ++L   +    +   +H+LVEQ +  ++ QR EG+EE+  
Sbjct: 68  GGESDEQSAAENSNPDRQRCEDLKLDVGGHRVVARDHVLVEQRHRREHHQRREGMEEVQR 127

Query: 64  PKPVFGSLFIRKSDRGINDPQASKRGDPIS-DFASFVPKTVGEEEEKTGEGAEGDKA 120
           P+ V      R   + ++DPQA +RG  ++     FV + VGE EE+ GEGAEG +A
Sbjct: 128 PQSVAHGQLRRYRLQAVDDPQAPERGHAVAHPPGCFVVEAVGEAEEEAGEGAEGQEA 184

BLAST of MS004924 vs. ExPASy TrEMBL
Match: A0A2P5FJ60 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_064250 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.7e-22
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 0

Query: 6   ENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDEPK 65
           E NK+QAA D   DR  +++L C +  R  E L+HIL+E+ +  +N+QR + V+EI  PK
Sbjct: 6   ERNKEQAAHDAYCDRHRHEKLLCLLGRRRTEALDHILIERHHRRENEQRRQRVDEIHSPK 65

Query: 66  PVFGSLFIRK---SDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAKCG 125
           PV G L  R    S R ++DPQAS+RGDPI+D A+ VP  VGE EE+ G GA G++AK G
Sbjct: 66  PVLGGLLGRNDRVSRRAVDDPQASERGDPIADLAAVVPTAVGEAEEEAGGGATGEEAKSG 125

Query: 126 GLADLG 129
           G A  G
Sbjct: 126 GPAHGG 131

BLAST of MS004924 vs. ExPASy TrEMBL
Match: A0A2P5B6P1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 0

Query: 6   ENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDEPK 65
           E NK+QAA D   DR  +++L   + W+  E L+HIL+E+ +  +N+QR + V+EI  PK
Sbjct: 6   ERNKEQAAHDAYCDRHRHKKLLRLLGWQRTEALDHILIERRHRRENEQRRQRVDEIHSPK 65

Query: 66  PVFGSLFIRKS---DRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAKCG 125
           P+ G L  R      R ++DPQAS+RGDPI+D A+ VP  VGE EE+ G GA G++AK G
Sbjct: 66  PILGGLLGRNDRVRRRAVDDPQASERGDPIADLATVVPTAVGEAEEEAGGGATGEEAKSG 125

Query: 126 GLADLG 129
           G A  G
Sbjct: 126 GPAHGG 131

BLAST of MS004924 vs. ExPASy TrEMBL
Match: A0A0A0KK92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 45/116 (38.79%), Postives = 73/116 (62.93%), Query Frame = 0

Query: 4   GGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEEIDE 63
           G ++NKQ   +  N +RQ  Q L   IRWR ++T++HIL++QSNS +NQ R E ++EI++
Sbjct: 4   GRKSNKQHTTKHPNCNRQRRQNLLRLIRWRRVKTVHHILIKQSNSRENQNRHESMQEINK 63

Query: 64  PKPVFGSLFIRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKA 120
           P+P+      RK    ++DPQAS+ G+ I +    V +T+ E  ++T +  E +KA
Sbjct: 64  PQPITSRDGRRKFHGAVDDPQASESGESIGNIPLTVSETISETLKETRQSTESNKA 119

BLAST of MS004924 vs. ExPASy TrEMBL
Match: A0A2P5CHX1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_284420 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 46/120 (38.33%), Postives = 71/120 (59.17%), Query Frame = 0

Query: 1   VSFGGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEE 60
           V+ GG+N+KQ    DTN +RQ  + L   IR R I+  +HIL++QSN  K++   + + E
Sbjct: 29  VALGGKNDKQHTTNDTNPNRQRRKNLLSLIRRRWIKATHHILIKQSNGRKHEYGHQSMHE 88

Query: 61  IDEPKPVFGSLFIRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDKAK 120
           ID+   +  SL  R+    ++ PQ S RG+ I+  +  VPKT+ E E+K G  A+  KA+
Sbjct: 89  IDKLHTILRSLLRRERGGAVDHPQPSPRGETIAHISVLVPKTIREAEQKRGRSAQSHKAR 148

BLAST of MS004924 vs. ExPASy TrEMBL
Match: A0A484M656 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS25873 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 0

Query: 1   VSFGGENNKQQAAQDTNSDRQHNQELPCFIRWRGIETLNHILVEQSNSYKNQQRSEGVEE 60
           ++F GE N++ A    N+ RQ+ Q+L    R R ++T++ +LV+Q    +N+   +GVEE
Sbjct: 1   MAFAGERNEKNATHKPNARRQNRQKLLRLRRRRRVQTVHDVLVQQRRGGENKDGVDGVEE 60

Query: 61  IDEPKPVFGSLF--IRKSDRGINDPQASKRGDPISDFASFVPKTVGEEEEKTGEGAEGDK 120
           I      FG L    R   R + D ++ +RG+ ++DF+  VP+ VGE E++ G GA G++
Sbjct: 61  IQHRYSPFGRLVGGNRGGGRQVEDEESPERGEGVTDFSPLVPEAVGETEDEAGRGASGEE 120

Query: 121 AKCGGLADLG 129
               GLAD G
Sbjct: 121 RHRQGLADGG 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON97835.15.6e-2249.21hypothetical protein TorRG33x02_064250 [Trema orientale][more]
PON44448.14.7e-2146.83hypothetical protein PanWU01x14_266830 [Parasponia andersonii][more]
PON60637.15.6e-1438.33hypothetical protein TorRG33x02_284420 [Trema orientale][more]
VFQ84097.12.4e-1236.15unnamed protein product [Cuscuta campestris][more]
CAG1854294.16.9e-1238.46unnamed protein product [Musa acuminata subsp. malaccensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5FJ602.7e-2249.21Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_064250 PE=4 SV... [more]
A0A2P5B6P12.3e-2146.83Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_266830 PE... [more]
A0A0A0KK922.7e-1438.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G518140 PE=4 SV=1[more]
A0A2P5CHX12.7e-1438.33Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_284420 PE=4 SV... [more]
A0A484M6561.1e-1236.15Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS25873 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004924.1MS004924.1mRNA