MS004907 (gene) Bitter gourd (TR) v1

Overview


Name	MS004907
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	glycine-rich RNA-binding protein 4, mitochondrial-like
Location	scaffold176: 1386207 .. 1387781 (-)
RNA-Seq Expression	MS004907
Synteny	MS004907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGCAACACGAACACCTTCATGCTGGTTGCCAGAAGAGTTCTTACCAATATCCAGAGCCGAACTCTGAGATGCCCTTGCTTCTGTTCTCAATCCTCTTCGTCTTCTCCTTCTGCGCTGAACAATAAGCTCTTTGTTGCAGGTTCGTGCCGCTTTCGCATCTTTCAAATGGTTTATTCATTGAATTGATCTTGTTCGTTCCTGCGGTTTGCAGGGTTGTCGTGGTCAATGGACGAGAGATCCTTGAAAGATGCGTTCTCTTCCTTTGGGGAGGTTACTGAAGGTAATCGCGAATGTTAAGTTACAAGTTTGAAGTCTTTATTTGAGCTGTCGTCAATATGTTCGACGAAATGTCTAGTCGATTTCAGTACATCATGTGTGCTTCTGGGTCGAAACTTTTTTGCTGCATTGCCATTTGTCACTCATAATTCTGAGGATATTTTTTAAATTTTATTGAAGATTACTGGTTTATGTCTTGTAAAGAGAGATGTGCGTTTTCCTCCATGGAGTCAAAATATTGATTCCTGAATTTTCTACCCAAATTCAAGAAACTTGGGACTTCCTCTCTTGCCACTGTCAAAAATCAAAATAGATTATTATTATTACTACTACTTTGGTATCTGGTCACCTGAAAATTTGAAGAAAAAATATAGTACCACAGTCTTGCTGCTCTATTGCCCTTTTCTCTAGTTTTATCCATTTGTACAATTTCTCCTTAGATAGAGAGATTAGAAAAGTTGTCCGAATAATGGAAGATAGAAAAGCCTACATAGGCATCCGTATCAATCTAGTTTCCGTTAATATTTTCTACAGACATATTGCCTGGTGGAAATCAGGGGAGCAAACGAGTTTAAGAAAGATAGGACTAGGAGCATGCTGTTTAATAGAGTTTTACTATGGTTCTGTGATTTTCTTGGAATTTTAAGACAGGAATCGATGAAAATTTTCAAGAATGAAAAATCTGCACGTAAGAGAATTGGGAAGTACTACGAATTTGTTAGATGGGAAATTGAAATTCATGTATGAGCTGAAAGGAATGTGACGTGCATTGGTGATCATTCTGAAACTTCATCAAATAGCTTATGGAGTTCATTTGATATAACCATAGGATGAAACTCAATGACCACTGTGATACAAAGTATATGGCAATTATTTTTCCACCCCATAAGTTTCTATCCTTTTCCTTCTGCCACTGGACAAGACCGCTCAGATGTTGAGTTTTGTTATGTTAAACCTCTTATGTTCTGAATGGTATAATGTTTCTTGACAGTCAGAATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTTACAAATGAAGATGATGCACAATGTGCGAAAGATGCAATGGACGGAAAGGCAAGTCATAAGAAAAAAGTTAGTTTTTCACTTTTAATATGTCATCATAAATTAGTCGAATGAGAGTCTTCACATCACTTGCAGGCCTTATTAGGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTTCGTGGTGGACCTGTTGTCGTTCCTCGACTTTCAAATGTCGGCAATGTTGTGGGCCAGAAATCT

mRNA sequence

ATGATGAGCAACACGAACACCTTCATGCTGGTTGCCAGAAGAGTTCTTACCAATATCCAGAGCCGAACTCTGAGATGCCCTTGCTTCTGTTCTCAATCCTCTTCGTCTTCTCCTTCTGCGCTGAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCAATGGACGAGAGATCCTTGAAAGATGCGTTCTCTTCCTTTGGGGAGGTTACTGAAGTCAGAATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTTACAAATGAAGATGATGCACAATGTGCGAAAGATGCAATGGACGGAAAGGCAAGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTTCGTGGTGGACCTGTTGTCGTTCCTCGACTTTCAAATGTCGGCAATGTTGTGGGCCAGAAATCT

Coding sequence (CDS)

ATGATGAGCAACACGAACACCTTCATGCTGGTTGCCAGAAGAGTTCTTACCAATATCCAGAGCCGAACTCTGAGATGCCCTTGCTTCTGTTCTCAATCCTCTTCGTCTTCTCCTTCTGCGCTGAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCAATGGACGAGAGATCCTTGAAAGATGCGTTCTCTTCCTTTGGGGAGGTTACTGAAGTCAGAATAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTTACAAATGAAGATGATGCACAATGTGCGAAAGATGCAATGGACGGAAAGGCAAGGCGACCATTGAGGATAAGCTTTGCCCTTGACAAGGTTCGTGGTGGACCTGTTGTCGTTCCTCGACTTTCAAATGTCGGCAATGTTGTGGGCCAGAAATCT

Protein sequence

MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKARRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

Homology

[Close]

BLAST of MS004907 vs. NCBI nr
Match: XP_022140496.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 141/144 (97.92%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLK 60
           MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLK
Sbjct: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLK 60

Query: 61  DAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFAL 120
           DAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA   RPLRISFAL
Sbjct: 61  DAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKALLGRPLRISFAL 120

Query: 121 DKVRGGPVVVPRLSNVGNVVGQKS 143
           DKVRGGPVVVPRLSNVGNVVGQKS
Sbjct: 121 DKVRGGPVVVPRLSNVGNVVGQKS 144

[Close]

BLAST of MS004907 vs. NCBI nr
Match: KAA0034781.1 (glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa] >TYK09579.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.3e-56
Identity = 117/145 (80.69%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS---SSSPSALNNKLFVAGLSWSMDER 60
           MMSNTNT +L+AR+ LTNIQ+  L   CFCSQS+   SSSPSA +NKLFVAGLSWSMDER
Sbjct: 1   MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDER 60

Query: 61  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKARRPLRISFA 120
           SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F NE+DAQCAKDAMDGKARRPL+ISFA
Sbjct: 61  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKARRPLKISFA 120

Query: 121 LDKVRGGPVVVPRLSNVGNVVGQKS 143
           L+KVRGGPV VPRLSN+ N+VG++S
Sbjct: 121 LEKVRGGPVAVPRLSNINNLVGRRS 145

[Close]

BLAST of MS004907 vs. NCBI nr
Match: XP_022986397.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 225.7 bits (574), Expect = 2.5e-55
Identity = 121/151 (80.13%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWS 60
           MMSN N  ML+ARR LTNIQ+  L   CFCSQSS       SSSPSA NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRP 120
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTNEDDAQ AKDAMDGKA   RP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVVPRLSNVGNVVGQKS 143
           LRISFALDKVRGGPVVVPRLSN+ NV+G++S
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVLGRRS 151

[Close]

BLAST of MS004907 vs. NCBI nr
Match: KAG7010748.1 (Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.7 bits (574), Expect = 2.5e-55
Identity = 120/148 (81.08%), Postives = 128/148 (86.49%), Query Frame = 0


Query: 2   MSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSM 61
           MSN NT M +ARR LTNIQ+  L   CFCSQSS       SSSPSA NNKLFVAGLSWS+
Sbjct: 1   MSNANTLMQLARRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWSL 60

Query: 62  DERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKARRPLRI 121
           DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTNEDDAQ AKDAMDGKARRPLRI
Sbjct: 61  DERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKARRPLRI 120

Query: 122 SFALDKVRGGPVVVPRLSNVGNVVGQKS 143
           SFALDKVRGGPVV+PRLSN+ NV G++S
Sbjct: 121 SFALDKVRGGPVVIPRLSNI-NVFGRRS 147

[Close]

BLAST of MS004907 vs. NCBI nr
Match: XP_023512965.1 (glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-54
Identity = 120/151 (79.47%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWS 60
           MMSNTNT M + RR LTNIQ+  L   CFCSQSS       SSSPSA NNKLFVAGLSWS
Sbjct: 1   MMSNTNTLMPLFRRALTNIQTPVLSFRCFCSQSSSSSSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRP 120
           +DERSLKDAFSS+GEVTEVRI+YDKDSGRSRGFGFVNFTNEDDAQ AKDAMDGKA   RP
Sbjct: 61  LDERSLKDAFSSYGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVVPRLSNVGNVVGQKS 143
           LRISFALDKVRGGPVVVPRLSN+ NV G++S
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVFGRRS 151

[Close]

BLAST of MS004907 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-17
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 41  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA 100
           +++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ ED A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 101 KDAMDGKA--RRPLRISFALDK 121
              MDGK    R +R++ A ++
Sbjct: 93  IKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of MS004907 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.2e-17
Identity = 44/103 (42.72%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 31  SQSSSSSPSAL-------NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRS 90
           +Q S SSPS         ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRS
Sbjct: 21  AQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRS 80

Query: 91  RGFGFVNFTNEDDAQCAKDAMDGK--ARRPLRISFALDKVRGG 125
           RGFGFV FT+ + A  A  A+DG+    R +++++A D+  GG
Sbjct: 81  RGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of MS004907 vs. ExPASy Swiss-Prot
Match: Q9SVM8 (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 9.0e-16
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 0


Query: 41  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA 100
           ++ KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A
Sbjct: 33  MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92

Query: 101 KDAMDGKA--RRPLRISFALDK 121
              MDGK    R +R++ A D+
Sbjct: 93  ISEMDGKELNGRHIRVNPANDR 114

[Close]

BLAST of MS004907 vs. ExPASy Swiss-Prot
Match: P39697 (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS19 PE=1 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-14
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 41  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA 100
           ++ KL++ GLS   DE SLKDAFSSF  VTE R++ +K +GRSRG+GFVNF +ED A  A
Sbjct: 29  MSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSA 88

Query: 101 KDAMDGKARRPLRISFALDK 121
             AM+G+      IS  + K
Sbjct: 89  ISAMNGQELNGFNISVNVAK 108

[Close]

BLAST of MS004907 vs. ExPASy Swiss-Prot
Match: W8E7I1 (RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 3.8e-14
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 39  SALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQ 98
           S+   KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN + A 
Sbjct: 2   SSEEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61

Query: 99  CAKDAMDGKA--RRPLRISFALDKVRG 124
            A  AM+G++   R +R+  A    RG
Sbjct: 62  NAMRAMNGESLDGRQIRVDHAGKSARG 88

[Close]

BLAST of MS004907 vs. ExPASy TrEMBL
Match: A0A6J1CG90 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111011148 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.6e-70
Identity = 141/144 (97.92%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLK 60
           MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLK
Sbjct: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLK 60

Query: 61  DAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFAL 120
           DAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA   RPLRISFAL
Sbjct: 61  DAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKALLGRPLRISFAL 120

Query: 121 DKVRGGPVVVPRLSNVGNVVGQKS 143
           DKVRGGPVVVPRLSNVGNVVGQKS
Sbjct: 121 DKVRGGPVVVPRLSNVGNVVGQKS 144

[Close]

BLAST of MS004907 vs. ExPASy TrEMBL
Match: A0A5D3CH06 (Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00050 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.1e-56
Identity = 117/145 (80.69%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS---SSSPSALNNKLFVAGLSWSMDER 60
           MMSNTNT +L+AR+ LTNIQ+  L   CFCSQS+   SSSPSA +NKLFVAGLSWSMDER
Sbjct: 1   MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDER 60

Query: 61  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKARRPLRISFA 120
           SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F NE+DAQCAKDAMDGKARRPL+ISFA
Sbjct: 61  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKARRPLKISFA 120

Query: 121 LDKVRGGPVVVPRLSNVGNVVGQKS 143
           L+KVRGGPV VPRLSN+ N+VG++S
Sbjct: 121 LEKVRGGPVAVPRLSNINNLVGRRS 145

[Close]

BLAST of MS004907 vs. ExPASy TrEMBL
Match: A0A6J1J7F1 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111484146 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 121/151 (80.13%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWS 60
           MMSN N  ML+ARR LTNIQ+  L   CFCSQSS       SSSPSA NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRP 120
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTNEDDAQ AKDAMDGKA   RP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVVPRLSNVGNVVGQKS 143
           LRISFALDKVRGGPVVVPRLSN+ NV+G++S
Sbjct: 121 LRISFALDKVRGGPVVVPRLSNINNVLGRRS 151

[Close]

BLAST of MS004907 vs. ExPASy TrEMBL
Match: A0A1S3C2R4 (glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495992 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.3e-54
Identity = 116/147 (78.91%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS---SSSPSALNNKLFVAGLSWSMDER 60
           MMSNTNT +L+AR+ LTNIQ+  L   CFCSQS+   SSSPSA +NKLFVAGLSWSMDER
Sbjct: 18  MMSNTNTLLLLARKALTNIQTPILTFRCFCSQSTSALSSSPSAPSNKLFVAGLSWSMDER 77

Query: 61  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRIS 120
           SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F NE+DAQCAKDAMDGKA   RPL+IS
Sbjct: 78  SLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVDFANENDAQCAKDAMDGKAVLGRPLKIS 137

Query: 121 FALDKVRGGPVVVPRLSNVGNVVGQKS 143
           FAL+KVRGGPV VPRLSN+ N+VG++S
Sbjct: 138 FALEKVRGGPVAVPRLSNINNLVGRRS 164

[Close]

BLAST of MS004907 vs. ExPASy TrEMBL
Match: A0A6J1FYH8 (glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111448693 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.5e-53
Identity = 119/151 (78.81%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWS 60
           MMSN N  ML+ARR LTNIQ+  L   CFCSQSS       SSSPSA NNKLFVAGLSWS
Sbjct: 1   MMSNANALMLLARRALTNIQTPVLSFRCFCSQSSSSYSSAPSSSPSAPNNKLFVAGLSWS 60

Query: 61  MDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRP 120
           +DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTNEDDAQ AKDAMDGKA   RP
Sbjct: 61  LDERSLKDAFSSFGEVTEVRIMYDKDSGRSRGFGFVNFTNEDDAQTAKDAMDGKALLGRP 120

Query: 121 LRISFALDKVRGGPVVVPRLSNVGNVVGQKS 143
           LRISFALDKVRGGPVV+PRLSN+ N+ G++S
Sbjct: 121 LRISFALDKVRGGPVVIPRLSNI-NMFGRRS 150

[Close]

BLAST of MS004907 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 87/132 (65.91%), Postives = 98/132 (74.24%), Query Frame = 0


Query: 6   NTFMLVARRVLT----NIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKD 65
           N   L+ RRV      +I S     P FC+ SSS+SPS   +KLF+ GLSWS+DE+SLKD
Sbjct: 4   NGIELLVRRVSAIPQHSISSSFHFLPQFCT-SSSASPS---SKLFIGGLSWSVDEQSLKD 63

Query: 66  AFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALD 125
           AFSSFGEV EVRI YDK SGRSRGFGFV+F  E DA  AKDAMDGK    RPLRISFAL+
Sbjct: 64  AFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFALE 123

Query: 126 KVRGGPVVVPRL 132
           +VRGGPVVVPRL
Sbjct: 124 RVRGGPVVVPRL 131

[Close]

BLAST of MS004907 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 41  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA 100
           +++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ ED A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 101 KDAMDGKA--RRPLRISFALDK 121
              MDGK    R +R++ A ++
Sbjct: 93  IKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of MS004907 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-18
Identity = 43/82 (52.44%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 41  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA 100
           +++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ ED A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 101 KDAMDGKA--RRPLRISFALDK 121
              MDGK    R +R++ A ++
Sbjct: 93  IKEMDGKELNGRQIRVNLATER 114

[Close]

BLAST of MS004907 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 88.2 bits (217), Expect = 5.8e-18
Identity = 44/103 (42.72%), Postives = 71/103 (68.93%), Query Frame = 0


Query: 31  SQSSSSSPSAL-------NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRS 90
           +Q S SSPS         ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRS
Sbjct: 21  AQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRS 80

Query: 91  RGFGFVNFTNEDDAQCAKDAMDGK--ARRPLRISFALDKVRGG 125
           RGFGFV FT+ + A  A  A+DG+    R +++++A D+  GG
Sbjct: 81  RGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGG 123

[Close]

BLAST of MS004907 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 87.8 bits (216), Expect = 7.6e-18
Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 41  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA 100
           ++ KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A
Sbjct: 33  MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92

Query: 101 KDAMDGKA--RRPLRISFALDKVRGG 125
              MDGK    R +R++ A D+  GG
Sbjct: 93  ISEMDGKELNGRHIRVNPANDRPSGG 118

The following BLAST results are available for this feature:

BLAST of MS004907 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140496.1	1.8e-69	97.92	glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]	[more]
KAA0034781.1	2.3e-56	80.69	glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa] >TYK09579.1 glycin...	[more]
XP_022986397.1	2.5e-55	80.13	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]	[more]
KAG7010748.1	2.5e-55	81.08	Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_023512965.1	2.1e-54	79.47	glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]

BLAST of MS004907 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIS2	3.7e-17	52.44	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9FNR1	8.2e-17	42.72	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9SVM8	9.0e-16	47.56	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
P39697	1.3e-14	51.25	40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
W8E7I1	3.8e-14	47.13	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2	[more]

BLAST of MS004907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG90	8.6e-70	97.92	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Momordica charantia OX...	[more]
A0A5D3CH06	1.1e-56	80.69	Glycine-rich RNA-binding protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1J7F1	1.2e-55	80.13	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita maxima OX=36...	[more]
A0A1S3C2R4	2.3e-54	78.91	glycine-rich RNA-binding protein 3, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1FYH8	1.5e-53	78.81	glycine-rich RNA-binding protein 4, mitochondrial-like OS=Cucurbita moschata OX=...	[more]

BLAST of MS004907 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G08000.1	1.1e-35	65.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	2.6e-18	52.44	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	2.6e-18	52.44	glycine-rich RNA-binding protein 4	[more]
AT5G61030.1	5.8e-18	42.72	glycine-rich RNA-binding protein 3	[more]
AT4G13850.4	7.6e-18	47.67	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 44..115 e-value: 7.2E-24 score: 95.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 45..107 e-value: 1.1E-20 score: 73.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 43..119 score: 19.655382
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 21..122 e-value: 6.5E-28 score: 99.7
None	No IPR available	PANTHER	PTHR15241:SF334	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL	coord: 6..136
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 6..136
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 32..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004907.1	MS004907.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding