MS004892 (gene) Bitter gourd (TR) v1

Overview
NameMS004892
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
Locationscaffold176: 1242611 .. 1242871 (-)
RNA-Seq ExpressionMS004892
SyntenyMS004892
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGCAAAGCACCAAGCTGGGCGGATCAGTGGGGTTCGGGCAATTACGGAGTCGAAGAGGACGAGAACAGGGTGACAACGAAGAAAGGGAGCAACAATGGCAGTAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCAGCTGGCTTTGTGAAGGCGAAGGCTGTTGCAGCAGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAA

mRNA sequence

ATGGGAAGCAAAGCACCAAGCTGGGCGGATCAGTGGGGTTCGGGCAATTACGGAGTCGAAGAGGACGAGAACAGGGTGACAACGAAGAAAGGGAGCAACAATGGCAGTAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCAGCTGGCTTTGTGAAGGCGAAGGCTGTTGCAGCAGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAA

Coding sequence (CDS)

ATGGGAAGCAAAGCACCAAGCTGGGCGGATCAGTGGGGTTCGGGCAATTACGGAGTCGAAGAGGACGAGAACAGGGTGACAACGAAGAAAGGGAGCAACAATGGCAGTAGTAGCAAGAAGATGGCAGAGGTAAAGGCAGCAGCCTCAGCTGGCTTTGTGAAGGCGAAGGCTGTTGCAGCAGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAA

Protein sequence

MGSKAPSWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAAVGAQKVKSGTSVGIKWVKNQYQKKVSK
Homology
BLAST of MS004892 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 3.4e-31
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEEDE-NRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVE+D+ N   TKKGS+NG+SSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 AVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

BLAST of MS004892 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.4 bits (363), Expect = 4.5e-31
Identity = 76/87 (87.36%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAA 60
          MGSKAPSWADQWGSG+YGVE+D+N   TKKGS+NG+SSKKMA+VKAAASAGFVKAK+ AA
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKVSK 87

BLAST of MS004892 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 1.3e-30
Identity = 78/87 (89.66%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAA 60
           MGSKAPSWADQWGSGNYGVE+D+ ++  KKGS+NGSSSKKM EVKAAASAGFVKAKAVAA
Sbjct: 91  MGSKAPSWADQWGSGNYGVEDDD-KMVAKKGSSNGSSSKKMTEVKAAASAGFVKAKAVAA 150

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 151 VGAQKVKSGTSVGIKWVKNQYQKKVSK 176

BLAST of MS004892 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 6.5e-30
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAA 60
          MGSKAPSWADQWGSG+YGVE+D+N   TKKGS+NG+SSKKMA+VKAAASAGFVKAK+ AA
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKKS 86

BLAST of MS004892 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 137.9 bits (346), Expect = 4.2e-29
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAA 60
           MGSKAPSWADQWGSGNYGVE+D+ ++  KKGS NGSSSKKM EVKAAASAGFVKAKAVAA
Sbjct: 80  MGSKAPSWADQWGSGNYGVEDDD-KMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAA 139

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKK 85
           VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 140 VGAQKVKSGTSVGIKWVKNQYQKK 162

BLAST of MS004892 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEEDE-NRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVE+D+ N   TKKGS+NG+SSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 AVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

BLAST of MS004892 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEEDE-NRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVA 60
           MGSKAPSWADQWGSGNYGVE+D+ N   TKKGS+NG+SSKKMAEVKAAASAGFVKAKAVA
Sbjct: 86  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 145

Query: 61  AVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
            VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 146 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 173

BLAST of MS004892 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.3e-25
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAA 60
          MGSKAPSWADQWGSG++G EED+N++ TKK S++G SSKKMAE KAAASAGF KAKA A+
Sbjct: 1  MGSKAPSWADQWGSGSFGDEEDDNKLVTKK-SSSGGSSKKMAEAKAAASAGFDKAKAAAS 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVKSGTSVG+KWVK QYQKK S
Sbjct: 61 VGAQKVKSGTSVGLKWVKKQYQKKSS 85

BLAST of MS004892 vs. ExPASy TrEMBL
Match: V4UEV4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 4.5e-21
Identity = 59/86 (68.60%), Postives = 73/86 (84.88%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAA 60
          MGSKAPSWADQWG+G +GV+E+++++ TK  S++G +  K+ EVKAAASAGF KAK+ AA
Sbjct: 1  MGSKAPSWADQWGTGGFGVDEEDDKLVTKNASSSGGN--KITEVKAAASAGFDKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVK+GTS GIKWVK QYQKK S
Sbjct: 61 VGAQKVKAGTSAGIKWVKKQYQKKGS 84

BLAST of MS004892 vs. ExPASy TrEMBL
Match: A0A2G5E5C3 (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01100038v1 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.7e-21
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAA 60
          M  +APSWADQWGSG YG + +++   TKKGS+   S KKMA++K+ ASAG  KAKA AA
Sbjct: 1  MAKEAPSWADQWGSGGYGADPEDDHNNTKKGSS--GSGKKMADMKSTASAGLDKAKAAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          VGAQKVKSGTSVGIKW+KNQYQKK SK
Sbjct: 61 VGAQKVKSGTSVGIKWMKNQYQKKTSK 85

BLAST of MS004892 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.4e-06
Identity = 34/81 (41.98%), Postives = 45/81 (55.56%), Query Frame = 0

Query: 7  SWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAAVGAQKV 66
          SWA+QW S      +  +  TT  G   G+SSK     K    AG  K KA A+ G +KV
Sbjct: 5  SWAEQWDS-----NQQSSGKTTHGGEGGGASSK----YKEKVGAGLGKTKAAASSGLKKV 64

Query: 67 KSGTSVGIKWVKNQYQKKVSK 88
          K GTS+G+ WVK++Y K  +K
Sbjct: 65 KIGTSLGLNWVKDKYNKTTTK 76

BLAST of MS004892 vs. TAIR 10
Match: AT1G11740.1 (ankyrin repeat family protein )

HSP 1 Score: 41.2 bits (95), Expect = 5.0e-04
Identity = 31/84 (36.90%), Postives = 37/84 (44.05%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAA 60
           M S+APSWADQWG+G  GV   E     KK      S K          AG  KAK V  
Sbjct: 573 MASEAPSWADQWGTGGIGVMAAEETTDGKKDVTGKKSGK--------TKAGINKAKIV-- 632

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKK 85
                      +G+ W+KN  Q+K
Sbjct: 633 ---------VFIGVNWMKNLVQRK 637

BLAST of MS004892 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.5e-04
Identity = 31/84 (36.90%), Postives = 43/84 (51.19%), Query Frame = 0

Query: 7  SWADQW---GSGNYGVEEDENRVTTKKGSNNGSSSKKMAEVKAAASAGFVKAKAVAAVGA 66
          SWADQW   G    G       V    GS   S++ K    K     G  K KAVA+ G 
Sbjct: 5  SWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTK---YKEKMGQGLDKTKAVASSGF 64

Query: 67 QKVKSGTSVGIKWVKNQYQKKVSK 88
          +K+K+G+++G +WVK++Y K   K
Sbjct: 65 KKLKTGSAIGFRWVKDKYHKTTHK 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059574.13.4e-3189.77hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865... [more]
KAG7010736.14.5e-3187.36hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7034974.11.3e-3089.66hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570886.16.5e-3086.05hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6604861.14.2e-2989.29hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DKS51.7e-3189.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LR111.7e-3189.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1[more]
A0A5C7HG952.3e-2579.07Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1[more]
V4UEV44.5e-2168.60Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 ... [more]
A0A2G5E5C37.7e-2168.97Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_01100038v1 PE=4... [more]
Match NameE-valueIdentityDescription
AT3G48180.12.4e-0641.98unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G11740.15.0e-0436.90ankyrin repeat family protein [more]
AT1G19020.16.5e-0436.90unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
NoneNo IPR availablePANTHERPTHR33386OS02G0740600 PROTEINcoord: 1..87
NoneNo IPR availablePANTHERPTHR33386:SF13ANKYRIN REPEAT PROTEINcoord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004892.1MS004892.1mRNA