MS004886 (gene) Bitter gourd (TR) v1

Overview


Name	MS004886
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	high mobility group B protein 3-like
Location	scaffold176: 1208406 .. 1209431 (-)
RNA-Seq Expression	MS004886
Synteny	MS004886

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAATCAGAGAAAAGCCGAGATGAAATCTACGAAAAGCAATAAATCCATGAAGAAAGATCAGAATGCACCAAAACGTCCAGCCACAGCTTTCTTCATTTTCATGTAAATATAATTTATAATTTCATGATTTTAGTGCTCTCTAGTGTCGGCTATATTTTGAAACCTTCCTTTGCACTTAAGCTTAAGTTATATCTATTATCTATCCGTTCGAGTTTAGATTTCTTGTTCTGGCAAATGATAGGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGTGAGATTTAATACTGTTGTTTTTTTCAGCATTCGTTTCTCTTTGTTCCTCCACTTATATTTGGATATGACTGAGTGGAGGAGCAGAAGACTTCTTGAGTTTGCCAGATTATGGTTAATTGTGGTTATCTGTGTTTTGTTGATCTGCAGGTTGGCAAAGCCGGCGGCGAGAAATGGAAATCATTATCTGATGCTGTAAGATTGTGATCTCTTGTTTTCGTACTATTTCATAGAAAAGTAATTCGAGAACAAACAATTATAATGAATAACCTAGCAATAACTGATTGGGATACAAGATTAATTGTAGCTCTGTTGTTCTGCTTTGTTTGAAGATCGTTGTTTCACGTTTTACTTTCTGTATTCATTTCACCAATTGATCAGGATGATCGATGTAAATCTGTGGTACTCTTTTTTCTTCCTTAGGAAAAAGCTCCTTACGCTGAAAAAGCTCTTAGTAGGAAGACAGAGTATGTGATAGCTCTCGAGGCATACAAGAAAACCCTCGTAAAGTTTTCCTACTCCTATCTATCTATCCTTTCATGCTGGATCTGTCTGAACATCTCTACAGTTCTATTTATTATCTGTTGTCCCTATCTCTGCTCTCTAAGATCTCCCGGTTTTCAGAATTGCTGTGCGGACGCTGAAGCTGCAATGCCAACAGAGTCACAGAAATCAACCTCTGAGGTCCATGATGATGCAGATCAGGAAGCTAGCTCTAGCTCT

mRNA sequence

ATGCTGAATCAGAGAAAAGCCGAGATGAAATCTACGAAAAGCAATAAATCCATGAAGAAAGATCAGAATGCACCAAAACGTCCAGCCACAGCTTTCTTCATTTTCATGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGAAAAAGCTCCTTACGCTGAAAAAGCTCTTAGTAGGAAGACAGAGTATGTGATAGCTCTCGAGGCATACAAGAAAACCCTCAATTGCTGTGCGGACGCTGAAGCTGCAATGCCAACAGAGTCACAGAAATCAACCTCTGAGGTCCATGATGATGCAGATCAGGAAGCTAGCTCTAGCTCT

Coding sequence (CDS)

ATGCTGAATCAGAGAAAAGCCGAGATGAAATCTACGAAAAGCAATAAATCCATGAAGAAAGATCAGAATGCACCAAAACGTCCAGCCACAGCTTTCTTCATTTTCATGGAGGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGAAAAAGCTCCTTACGCTGAAAAAGCTCTTAGTAGGAAGACAGAGTATGTGATAGCTCTCGAGGCATACAAGAAAACCCTCAATTGCTGTGCGGACGCTGAAGCTGCAATGCCAACAGAGTCACAGAAATCAACCTCTGAGGTCCATGATGATGCAGATCAGGAAGCTAGCTCTAGCTCT

Protein sequence

MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDADQEASSSS

Homology

[Close]

BLAST of MS004886 vs. NCBI nr
Match: XP_022140698.1 (high mobility group B protein 3-like [Momordica charantia])

HSP 1 Score: 199.9 bits (507), Expect = 1.2e-47
Identity = 113/130 (86.92%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP------ 60
           ML QRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP      
Sbjct: 18  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  ---------AEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHD 116
                    AEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHD
Sbjct: 78  GEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHD 137

[Close]

BLAST of MS004886 vs. NCBI nr
Match: XP_038902242.1 (high mobility group B protein 1-like [Benincasa hispida])

HSP 1 Score: 174.1 bits (440), Expect = 7.0e-40
Identity = 101/132 (76.52%), Postives = 105/132 (79.55%), Query Frame = 0


Query: 1   MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP------ 60
           ML QRK EMKSTKS K+ KKDQNAPKRPATAFF+FMEEFRKTFKE+FPDAKAGP      
Sbjct: 18  MLKQRKTEMKSTKSKKATKKDQNAPKRPATAFFVFMEEFRKTFKEEFPDAKAGPVVGKAG 77

Query: 61  ---------AEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA--AMPTESQKSTSEV 116
                     EKAPYAEKAL RK EY IALEAYKK LNCCADAEA   MPTESQKSTSEV
Sbjct: 78  GEKWKSMSDTEKAPYAEKALRRKAEYEIALEAYKKNLNCCADAEAEIEMPTESQKSTSEV 137

[Close]

BLAST of MS004886 vs. NCBI nr
Match: XP_023533147.1 (high mobility group B protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.6 bits (418), Expect = 2.5e-37
Identity = 98/132 (74.24%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 1   MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP------ 60
           ML +RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP      
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  ---------AEKAPYAEKALSRKTEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEV 116
                    AEKAPYAEK+L RK EY IALE YKK LNC   A+AE  M TESQKSTS+V
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAAEAEVEMSTESQKSTSDV 137

[Close]

BLAST of MS004886 vs. NCBI nr
Match: XP_022971125.1 (high mobility group B protein 3-like [Cucurbita maxima])

HSP 1 Score: 164.5 bits (415), Expect = 5.5e-37
Identity = 97/132 (73.48%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 1   MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP------ 60
           ML +RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP      
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  ---------AEKAPYAEKALSRKTEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEV 116
                    AEKAPYAEK+L RK EY IALE YKK LNC   A+AE  + TESQKSTS+V
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSVAAEAEVELSTESQKSTSDV 137

[Close]

BLAST of MS004886 vs. NCBI nr
Match: XP_022947100.1 (high mobility group B protein 3-like [Cucurbita moschata])

HSP 1 Score: 164.1 bits (414), Expect = 7.2e-37
Identity = 97/132 (73.48%), Postives = 103/132 (78.03%), Query Frame = 0


Query: 1   MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP------ 60
           ML +RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP      
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  ---------AEKAPYAEKALSRKTEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEV 116
                    AEKAPYAEK+L RK EY IALE YKK LNC   A+AE  M TESQKSTS+V
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAAEAEVEMSTESQKSTSDV 137

[Close]

BLAST of MS004886 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-13
Identity = 58/123 (47.15%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 6   KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPD-------AKAG----- 65
           K +   TK  K   KD N PKRP +AFF+FME+FRKT+KEK P+        KAG     
Sbjct: 17  KKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWK 76

Query: 66  ---PAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVH-DDADQ 113
               AEKAP+  KA  RK EY   L+AY K       A AA   ES KS SEV+ DD DQ
Sbjct: 77  QLTAAEKAPFISKAEKRKQEYEKNLQAYNKK----QAAGAAEEEESDKSRSEVNDDDEDQ 135

[Close]

BLAST of MS004886 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-12
Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 6   KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA------------- 65
           K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA             
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 66  --GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDD 107
               AEKAPY EKA  RK EY   ++AY K L   +D       ES+KS SE++D+
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD-------ESEKSRSEINDE 142

[Close]

BLAST of MS004886 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 51/127 (40.16%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 2   LNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA--------- 61
           L+  K   K     K+  KD N PKRPA+AFF+FME+FR+TFK++ P  K+         
Sbjct: 15  LSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAG 74

Query: 62  ------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDD 114
                   +EKAPY  KA  RK EY   ++AY K L    +       ES KS SEV+D+
Sbjct: 75  DKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKL----EEGPKEDEESDKSVSEVNDE 134

[Close]

BLAST of MS004886 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 53/132 (40.15%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 6   KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---- 65
           KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+    
Sbjct: 7   KAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAV 66

Query: 66  -----------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTS 114
                        +EKAPY  KA  RK EY   ++AY K L    +       ES KS S
Sbjct: 67  GKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL----EEGPKEDEESDKSVS 126

[Close]

BLAST of MS004886 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 0


Query: 20  KDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKA 79
           KD N PKRP +AFF+FM +FR+ +K+  P+ K+  A               EKAPY ++A
Sbjct: 40  KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 99

Query: 80  LSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDADQE 111
           L +K EY I L+AY K L    D E      S KS SEV+D+ + E
Sbjct: 100 LKKKEEYEITLQAYNKKLEGKDDEEG-----SDKSKSEVNDEDEDE 140

[Close]

BLAST of MS004886 vs. ExPASy TrEMBL
Match: A0A6J1CIL2 (high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011298 PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.8e-48
Identity = 113/130 (86.92%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP------ 60
           ML QRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP      
Sbjct: 18  MLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  ---------AEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHD 116
                    AEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHD
Sbjct: 78  GEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHD 137

[Close]

BLAST of MS004886 vs. ExPASy TrEMBL
Match: A0A6J1I4V5 (high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.7e-37
Identity = 97/132 (73.48%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 1   MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP------ 60
           ML +RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP      
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  ---------AEKAPYAEKALSRKTEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEV 116
                    AEKAPYAEK+L RK EY IALE YKK LNC   A+AE  + TESQKSTS+V
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSVAAEAEVELSTESQKSTSDV 137

[Close]

BLAST of MS004886 vs. ExPASy TrEMBL
Match: A0A6J1G5W3 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451070 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.5e-37
Identity = 97/132 (73.48%), Postives = 103/132 (78.03%), Query Frame = 0


Query: 1   MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP------ 60
           ML +RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP      
Sbjct: 18  MLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAG 77

Query: 61  ---------AEKAPYAEKALSRKTEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEV 116
                    AEKAPYAEK+L RK EY IALE YKK LNC   A+AE  M TESQKSTS+V
Sbjct: 78  GEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAAEAEVEMSTESQKSTSDV 137

[Close]

BLAST of MS004886 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.4e-32
Identity = 91/131 (69.47%), Postives = 96/131 (73.28%), Query Frame = 0


Query: 2   LNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP------- 61
           L QRKAEMKSTKS    KKDQNAPKRPATAFF+FMEEFR  FKE+FPDAKAGP       
Sbjct: 19  LKQRKAEMKSTKSK---KKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGG 78

Query: 62  --------AEKAPYAEKALSRKTEYVIALEAYKKTLNC--CADAEAAMPTESQKSTSEVH 116
                   AEKAPYAEKAL RK EY IALEAYK   NC   A+ E  MPTESQKSTSEV+
Sbjct: 79  EKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTESQKSTSEVN 138

[Close]

BLAST of MS004886 vs. ExPASy TrEMBL
Match: A0A1S3C1W5 (HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.3e-31
Identity = 90/139 (64.75%), Postives = 95/139 (68.35%), Query Frame = 0


Query: 2   LNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA------ 61
           L QRKAEMKSTKS    KKDQNAPKRPATAFF+FMEEFR  FKE+FPDAKAGP       
Sbjct: 19  LKQRKAEMKSTKSK---KKDQNAPKRPATAFFVFMEEFRMMFKEQFPDAKAGPVVGKAGG 78

Query: 62  -----------------EKAPYAEKALSRKTEYVIALEAYKKTLNC--CADAEAAMPTES 116
                            EKAPYAEKAL RK EY IALEAYK   NC   A+ E  MPTES
Sbjct: 79  EKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVAEPELEMPTES 138

[Close]

BLAST of MS004886 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 6   KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA------------- 65
           K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA             
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 66  --GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDD 107
               AEKAPY EKA  RK EY   ++AY K L   +D       ES+KS SE++D+
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD-------ESEKSRSEINDE 142

[Close]

BLAST of MS004886 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 6   KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA------------- 65
           K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA             
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 66  --GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDD 107
               AEKAPY EKA  RK EY   ++AY K L   +D       ES+KS SE++D+
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD-------ESEKSRSEINDE 142

[Close]

BLAST of MS004886 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 6   KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA------------- 65
           K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA             
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 66  --GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDD 107
               AEKAPY EKA  RK EY   ++AY K L   +D       ES+KS SE++D+
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD-------ESEKSRSEINDE 142

[Close]

BLAST of MS004886 vs. TAIR 10
Match: AT3G51880.4 (high mobility group B1 )

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 6   KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA------------- 65
           K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA             
Sbjct: 34  KPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWK 93

Query: 66  --GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDD 107
               AEKAPY EKA  RK EY   ++AY K L   +D       ES+KS SE++D+
Sbjct: 94  SMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD-------ESEKSRSEINDE 142

[Close]

BLAST of MS004886 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 67.4 bits (163), Expect = 8.6e-12
Identity = 53/132 (40.15%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 6   KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---- 65
           KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+    
Sbjct: 7   KAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAV 66

Query: 66  -----------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTS 114
                        +EKAPY  KA  RK EY   ++AY K L    +       ES KS S
Sbjct: 67  GKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKL----EEGPKEDEESDKSVS 126

The following BLAST results are available for this feature:

BLAST of MS004886 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140698.1	1.2e-47	86.92	high mobility group B protein 3-like [Momordica charantia]	[more]
XP_038902242.1	7.0e-40	76.52	high mobility group B protein 1-like [Benincasa hispida]	[more]
XP_023533147.1	2.5e-37	74.24	high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971125.1	5.5e-37	73.48	high mobility group B protein 3-like [Cucurbita maxima]	[more]
XP_022947100.1	7.2e-37	73.48	high mobility group B protein 3-like [Cucurbita moschata]	[more]

BLAST of MS004886 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40619	4.4e-13	47.15	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
O49595	2.2e-12	41.38	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
O49596	1.2e-10	40.16	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P93047	1.2e-10	40.15	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
P40620	2.1e-10	41.51	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of MS004886 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIL2	5.8e-48	86.92	high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1I4V5	2.7e-37	73.48	high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891...	[more]
A0A6J1G5W3	3.5e-37	73.48	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A1S3C2L9	3.4e-32	69.47	high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C1W5	8.3e-31	64.75	HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1	[more]

BLAST of MS004886 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51880.1	1.6e-13	41.38	high mobility group B1	[more]
AT3G51880.2	1.6e-13	41.38	high mobility group B1	[more]
AT3G51880.3	1.6e-13	41.38	high mobility group B1	[more]
AT3G51880.4	1.6e-13	41.38	high mobility group B1	[more]
AT1G20696.1	8.6e-12	40.15	high mobility group B3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 24..80 e-value: 8.1E-6 score: 35.3
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 25..52 e-value: 5.1E-6 score: 26.8
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 25..79 score: 8.954899
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 8..54 e-value: 4.0E-9 score: 38.5
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 16..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..115
None	No IPR available	PANTHER	PTHR46261:SF10	HIGH MOBILITY GROUP B PROTEIN 3-LIKE	coord: 1..113
None	No IPR available	CDD	cd00084	HMG-box	coord: 25..71 e-value: 1.09205E-5 score: 38.3688
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS004886.1	MS004886.1	mRNA